mRNA_E-fasciculatus_F_contig10938.753.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig10938.753.1
Unique NamemRNA_E-fasciculatus_F_contig10938.753.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig10938.753.1 vs. uniprot
Match: D7FS37_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS37_ECTSI)

HSP 1 Score: 403 bits (1035), Expect = 1.900e-137
Identity = 199/215 (92.56%), Postives = 208/215 (96.74%), Query Frame = 1
Query:    1 MARGTAFLALA-GLMLERSTAVMDVGNEHVCATIGSSAKCWGNNRWGQLGRGDNTTSIGDDPDEMGDNLVAVPVGGTVSEMALGEDHTCMLLDSGDVVCFGKNDSGQLGLGDTSTRGQIAGDVGEAADLGTGLSAVAVTAGCRHTCGLLDDGSVKCFGYNNFGQLGQGTTDNMGDDEGEMGDELPAVSLDGTVSAVAAGCDHTCALMDDGTVMCW 642
            MARGTAFLALA GLMLERS AVMDVG+EHVCATIGSSAKCWGNNRWGQLGRGDNTT IGD+PDEMGDNLVAVPVGGTV+E+ALGEDHTCMLLDSG+VVCFGKNDSGQLGLGDTSTRGQIAGDVGEAADLG GLSAVAV  GCRHTCGLLDDG+VKCFGYNN+GQLGQGTT+NMGDD GEMGD+LPAVSLDGTVSAVAAGCDHTCALMDDGTVMCW
Sbjct:    1 MARGTAFLALASGLMLERSMAVMDVGDEHVCATIGSSAKCWGNNRWGQLGRGDNTTLIGDEPDEMGDNLVAVPVGGTVAEVALGEDHTCMLLDSGNVVCFGKNDSGQLGLGDTSTRGQIAGDVGEAADLGAGLSAVAVALGCRHTCGLLDDGTVKCFGYNNYGQLGQGTTENMGDDAGEMGDDLPAVSLDGTVSAVAAGCDHTCALMDDGTVMCW 215          
BLAST of mRNA_E-fasciculatus_F_contig10938.753.1 vs. uniprot
Match: A0A6H5L2S4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2S4_9PHAE)

HSP 1 Score: 286 bits (732), Expect = 1.330e-95
Identity = 142/158 (89.87%), Postives = 146/158 (92.41%), Query Frame = 1
Query:  169 IGDDPDEMGDNLVAVPVGGTVSEMALGEDHTCMLLDSGDVVCFGKNDSGQLGLGDTSTRGQIAGDVGEAADLGTGLSAVAVTAGCRHTCGLLDDGSVKCFGYNNFGQLGQGTTDNMGDDEGEMGDELPAVSLDGTVSAVAAGCDHTCALMDDGTVMCW 642
            +GDDPDEMGDNLVAV VGGTV+EMALGEDHTCMLLDSGDVVCFGKNDSGQLGLGDTSTRGQIAGDVGEAADLG GLSAVAV AGCRHTCGLLDDG+VKCFGY        GTTDNMGDD GEMGD+LPAVSLDGTVSAVAAGCDHTCALMDDGTVMCW
Sbjct:    2 VGDDPDEMGDNLVAVSVGGTVAEMALGEDHTCMLLDSGDVVCFGKNDSGQLGLGDTSTRGQIAGDVGEAADLGAGLSAVAVAAGCRHTCGLLDDGTVKCFGYTT------GTTDNMGDDAGEMGDDLPAVSLDGTVSAVAAGCDHTCALMDDGTVMCW 153          
BLAST of mRNA_E-fasciculatus_F_contig10938.753.1 vs. uniprot
Match: A0A835T669_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835T669_9CHLO)

HSP 1 Score: 187 bits (475), Expect = 1.520e-53
Identity = 107/206 (51.94%), Postives = 136/206 (66.02%), Query Frame = 1
Query:   49 RSTAVMDVGNEHVCATIGS-SAKCWGNNRWGQLGRGDNTTSIGDDPDEMGDNLVAVPVGG--TVSEMALGEDHTCMLLDSGDVVCFGKNDSGQLGLGDTSTRGQIAGDVGE---AADLGTGLSAVAVTAGCRHTCGLLDDGSVKCFGYNNFGQLGQGTTDNMGDDEGEMGDELPAVSLDG--TVSAVAAGCDHTCALMDDGTVMCW 642
            R+   + VG  H CA + + S KCWG N +GQLG GD T+  GD P EMGD L A+ +G   T + +++G  HTC LLD+G + C+G N  GQLGLGDTS+RG   G++G+   A  LGTG +A A++AG  HTC LLD+GSVKC+G N  GQLG G T    D  GEMGD LPAV L    T +A++AG  HTCAL+D+G V CW
Sbjct:  162 RTATAISVGGIHTCALLDNGSVKCWGYNAYGQLGLGD-TSDRGDGPGEMGDTLPAITLGTGRTAAAISVGGYHTCALLDNGSIKCWGYNAYGQLGLGDTSSRGDGPGEMGDTLPAITLGTGRTAKAISAGGYHTCALLDNGSVKCWGANGNGQLGLGDTSYRSDGPGEMGDTLPAVVLGTGRTATAISAGYYHTCALLDNGYVKCW 366          
BLAST of mRNA_E-fasciculatus_F_contig10938.753.1 vs. uniprot
Match: A0A835T094_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835T094_9CHLO)

HSP 1 Score: 193 bits (490), Expect = 4.260e-53
Identity = 109/201 (54.23%), Postives = 137/201 (68.16%), Query Frame = 1
Query:   64 MDVGNEHVCATIGS-SAKCWGNNRWGQLGRGDNTTSIGDDPDEMGDNL--VAVPVGGTVSEMALGEDHTCMLLDSGDVVCFGKNDSGQLGLGDTSTRGQIAGDVGE---AADLGTGLSAVAVTAGCRHTCGLLDDGSVKCFGYNNFGQLGQGTTDNMGDDEGEMGDELPAVSLDG--TVSAVAAGCDHTCALMDDGTVMCW 642
            +  G +H CA + + S KCWG N  GQLG GD T+  GD P EMGD L  VA+  G T + +++G  HTC LLD+G V C+G ND G LGLGDTS RG   G++G+   A  LGTG +A A++AG  HTC LLD+GSVKC+G+N FGQLG G T   GD  GEMGD LPAV+L    T +A++AG  HTCAL+D+G+V CW
Sbjct: 1512 ISAGFKHTCALLDNGSVKCWGYNYDGQLGLGD-TSPRGDGPGEMGDTLPAVALGTGRTATAISVGSWHTCALLDNGSVKCWGYNDYGYLGLGDTSRRGNELGEMGDRLPAVALGTGRTATAISAGGWHTCALLDNGSVKCWGWNQFGQLGLGDTSPRGDGPGEMGDTLPAVALGTGRTATAISAGVLHTCALLDNGSVKCW 1711          
BLAST of mRNA_E-fasciculatus_F_contig10938.753.1 vs. uniprot
Match: A0A7C1YL65_9ACTN (Uncharacterized protein (Fragment) n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7C1YL65_9ACTN)

HSP 1 Score: 184 bits (467), Expect = 1.790e-51
Identity = 102/206 (49.51%), Postives = 132/206 (64.08%), Query Frame = 1
Query:   49 RSTAVMDVGNEHVCATIGS-SAKCWGNNRWGQLGRGDNTTSIGDDPDEMGDNLVAVPV--GGTVSEMALGEDHTCMLLDSGDVVCFGKNDSGQLGLGDTSTRGQIAGDVGE---AADLGTGLSAVAVTAGCRHTCGLLDDGSVKCFGYNNFGQLGQGTTDNMGDDEGEMGDELPAVSLDG--TVSAVAAGCDHTCALMDDGTVMCW 642
            R+   +  G  H CA + + + KCWGNN  GQLG+GD   S G DP EMGDNL  + +  GGT + ++    HTC LL +G V C+G N +G LG G T   G   G++G      DLG G +A A+TAG  HTC LLD+ +VKC+G N++GQLGQGTTD++GD+ GEMGD LP V L    T +A+ AG  HTCAL+D+ TV CW
Sbjct:  104 RTATAITAGTNHTCALLDNDTVKCWGNNVLGQLGQGD-ANSRGGDPGEMGDNLPTINLSRGGTATAISTSGVHTCALLHNGTVKCWGYNLNGGLGQGHTDDIGDNPGEMGNNLPPIDLGAGRTATAITAGDSHTCALLDNSTVKCWGDNSYGQLGQGTTDDIGDNPGEMGDNLPPVDLGAGRTATAITAGSFHTCALLDNNTVKCW 308          
BLAST of mRNA_E-fasciculatus_F_contig10938.753.1 vs. uniprot
Match: A0A0K1EHP4_CHOCO (Uncharacterized protein n=2 Tax=Chondromyces crocatus TaxID=52 RepID=A0A0K1EHP4_CHOCO)

HSP 1 Score: 184 bits (468), Expect = 1.810e-51
Identity = 106/199 (53.27%), Postives = 130/199 (65.33%), Query Frame = 1
Query:   70 VGNEHVCATIGSS-AKCWGNNRWGQLGRGDNTTSIGDDPDEMGDNLVAVPVGG--TVSEMALGEDHTCMLLDSGDVVCFGKNDSGQLGLGDTSTRGQIAGDVGEA---ADLGTGLSAVAVTAGCRHTCGLLDDGSVKCFGYNNFGQLGQGTTDNMGDDEGEMGDELPAVSLDG--TVSAVAAGCDHTCALMDDGTVMCW 642
            +G +H CA +     KCWG N  GQLG GD T   GD  DEMGD L AV +G   TV  +A G++HTC LL  G V C+G N SGQLGLGDT+ RG   G++G+A    +LGTG +A+A+  G RHTC LLDDGSVKC+G+N  G+LG G T   GD  GEMGD L AV L    T +A++ G  H CAL+DDG+V CW
Sbjct:  198 MGYDHACALLHDGRVKCWGRNVQGQLGLGD-TEPRGDAADEMGDALPAVDLGTGVTVVGLAAGDNHTCALLGGGSVKCWGANTSGQLGLGDTAPRGDGPGEMGDALPTVNLGTGRTALAIGGGDRHTCALLDDGSVKCWGFNTGGKLGLGDTAPRGDGPGEMGDALLAVDLGAGRTAAALSVGGSHACALLDDGSVKCW 395          
BLAST of mRNA_E-fasciculatus_F_contig10938.753.1 vs. uniprot
Match: A0A3M1N8Z3_9BACT (T9SS C-terminal target domain-containing protein (Fragment) n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A3M1N8Z3_9BACT)

HSP 1 Score: 176 bits (447), Expect = 4.040e-50
Identity = 98/176 (55.68%), Postives = 118/176 (67.05%), Query Frame = 1
Query:  136 GQLGRGDNTTSIGDDPDEMGDNLVAVPVGG--TVSEMALGEDHTCMLLDSGDVVCFGKNDSGQLGLGDTSTRGQIAGDVGE---AADLGTGLSAVAVTAGCRHTCGLLDDGSVKCFGYNNFGQLGQGTTDNMGDDEGEMGDELPAVSLDG--TVSAVAAGCDHTCALMDDGTVMCW 642
            GQLG GD T+  GD P EMGDNL AV +G   T + +ALG  H+C L D G V C+GKN  GQLGLGD + RG   G++G+     DLGTG +A A+ AG   TC LLDDGSVKC+G  ++GQLGQG T + GDD GEMGD LP + L    T  A+AAG  H CAL+DDG+V CW
Sbjct:    2 GQLGLGD-TSDRGDAPGEMGDNLPAVDLGTGRTPTALALGNSHSCALFDDGAVKCWGKNRRGQLGLGDINDRGDAPGEMGDNLPTVDLGTGRTATAIAAGESFTCALLDDGSVKCWGEGDYGQLGQGDTAHRGDDPGEMGDNLPPIDLGAGRTAIAIAAGSFHACALLDDGSVKCW 176          
BLAST of mRNA_E-fasciculatus_F_contig10938.753.1 vs. uniprot
Match: A0A7C1YRK2_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7C1YRK2_9ACTN)

HSP 1 Score: 182 bits (461), Expect = 4.360e-50
Identity = 102/206 (49.51%), Postives = 131/206 (63.59%), Query Frame = 1
Query:   49 RSTAVMDVGNEHVCATIGS-SAKCWGNNRWGQLGRGDNTTSIGDDPDEMGDNLVAVPVGG--TVSEMALGEDHTCMLLDSGDVVCFGKNDSGQLGLGDTSTRGQIAGDVGE---AADLGTGLSAVAVTAGCRHTCGLLDDGSVKCFGYNNFGQLGQGTTDNMGDDEGEMGDELPAVSLDG--TVSAVAAGCDHTCALMDDGTVMCW 642
            R+   +  G ++ CA +   + KCWGNN  GQLG+G NT  IGD+P EMGDNL AV +G   T + ++ G  HTC LLD G V C+G    G+LG GD + RG  AG++G+     +LGTG +A AV+AG  HTC LLDDG+VKC+G    GQLG G    +GD+ GEMGD LP V L    T  A+AAG   +CA++DDG V CW
Sbjct:  169 RTATAIAAGQQYTCALLDDGTVKCWGNNSSGQLGQG-NTDDIGDNPGEMGDNLPAVDLGTGRTATAISAGSSHTCALLDDGTVKCWGSGSFGRLGYGDLTKRGDGAGEMGDNLPPLELGTGRTATAVSAGNTHTCALLDDGTVKCWGGGFNGQLGTGDVTGLGDNPGEMGDNLPPVDLGSGRTAIAIAAGSRASCAVLDDGGVKCW 373          
BLAST of mRNA_E-fasciculatus_F_contig10938.753.1 vs. uniprot
Match: A0A381W004_9ZZZZ (Big_5 domain-containing protein n=1 Tax=marine metagenome TaxID=408172 RepID=A0A381W004_9ZZZZ)

HSP 1 Score: 184 bits (466), Expect = 5.860e-50
Identity = 103/205 (50.24%), Postives = 136/205 (66.34%), Query Frame = 1
Query:   46 ERSTAVMDVGNEHVCATIG-SSAKCWGNNRWGQLGRGDNTTSIGDDPDEMGDNLVAVPVGGTVSEMALGEDHTCMLLDSGDVVCFGKNDSGQLGLGDTSTRGQIAGDVGE---AADLGTGLSAVAVTAGCRHTCGLLDDGSVKCFGYNNFGQLGQGTTDNMGDDEGEMGDELPAVSLDG--TVSAVAAGCDHTCALMDDGTVMCW 642
            E S   + VGN H C  +G SS KCWG N  GQLG+G NT++IGD   EMG+NL A+   G V E+A+G++H+C+ LD+  V C+G N+ GQLG+ ++S  G  +G++G    A +LGT   AV +T G  HTC  LDD ++KC+GYN FGQLGQG+T N+GD  GEM   L A++L    T   VAAG + TCA +DDGTV CW
Sbjct:  590 EFSAVKLAVGNYHSCVNLGYSSVKCWGRNDSGQLGQG-NTSNIGDASSEMGNNLSAIDFDGKVVEVAVGKNHSCVRLDNSSVKCWGDNEFGQLGIDNSSDIGDGSGEMGSNLTAINLGTNKKAVEITTGGDHTCARLDDHTIKCWGYNGFGQLGQGSTSNIGDGSGEM-TSLSAITLPAGRTALQVAAGENFTCARLDDGTVRCW 792          
BLAST of mRNA_E-fasciculatus_F_contig10938.753.1 vs. uniprot
Match: A0A812SWJ0_9DINO (Herc4 protein n=1 Tax=Symbiodinium necroappetens TaxID=1628268 RepID=A0A812SWJ0_9DINO)

HSP 1 Score: 182 bits (463), Expect = 8.050e-50
Identity = 109/206 (52.91%), Postives = 129/206 (62.62%), Query Frame = 1
Query:   49 RSTAVMDVGNEHVCATIGS-SAKCWGNNRWGQLGRGDNTTSIGDDPDEMGDNL--VAVPVGGTVSEMALGEDHTCMLLDSGDVVCFGKNDSGQLGLGDTSTRGQIAGDVGE---AADLGTGLSAVAVTAGCRHTCGLLDDGSVKCFGYNNFGQLGQGTTDNMGDDEGEMGDELPAVSLDGTVSAV--AAGCDHTCALMDDGTVMCW 642
            RS   +  G  H CA +   S KCWG N +GQLG G +   +GD   EMGD L  VA+  G +   +A G  HTC  LD G V C+G+N+ GQLGLG T  RG  + ++G+   A  LGTG SAV VTAG  HTC  LDDGSVKC+G N++G LG GTTDNMGD   EMGD LP V+     SAV  AAG  HTCA +DDGTV CW
Sbjct:   76 RSAVEVTAGELHTCARLDDGSVKCWGYNWYGQLGLGSHDY-MGDGASEMGDYLPPVALGTGRSAVGVAAGYSHTCARLDDGTVKCWGRNNYGQLGLGTTDDRGDGSSEMGDYLPAVALGTGRSAVEVTAGSYHTCARLDDGSVKCWGSNSYGVLGLGTTDNMGDGSNEMGDHLPLVAFGTGRSAVEVAAGKYHTCARLDDGTVKCW 280          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10938.753.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FS37_ECTSI1.900e-13792.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L2S4_9PHAE1.330e-9589.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835T669_9CHLO1.520e-5351.94Uncharacterized protein n=1 Tax=Chlamydomonas schl... [more]
A0A835T094_9CHLO4.260e-5354.23Uncharacterized protein n=1 Tax=Chlamydomonas schl... [more]
A0A7C1YL65_9ACTN1.790e-5149.51Uncharacterized protein (Fragment) n=1 Tax=Acidimi... [more]
A0A0K1EHP4_CHOCO1.810e-5153.27Uncharacterized protein n=2 Tax=Chondromyces croca... [more]
A0A3M1N8Z3_9BACT4.040e-5055.68T9SS C-terminal target domain-containing protein (... [more]
A0A7C1YRK2_9ACTN4.360e-5049.51Uncharacterized protein n=1 Tax=Acidimicrobiales b... [more]
A0A381W004_9ZZZZ5.860e-5050.24Big_5 domain-containing protein n=1 Tax=marine met... [more]
A0A812SWJ0_9DINO8.050e-5052.91Herc4 protein n=1 Tax=Symbiodinium necroappetens T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10938contigE-fasciculatus_F_contig10938:2244..4471 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score404.4
Seed ortholog evalue3.2e-110
Seed eggNOG ortholog2880.D7FS37
EggNOG free text desc.ubiquitin-protein transferase activity
EggNOG OGsCOG5021@1,KOG0941@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons4
Model size645
Cds size645
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10938.753.1prot_E-fasciculatus_F_contig10938.753.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig10938 2244..4471 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927594.3713193-CDS-E-fasciculatus_F_contig10938:2243..22931622927594.3713193-CDS-E-fasciculatus_F_contig10938:2243..2293Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10938 2244..2293 +
1695995611.8674963-CDS-E-fasciculatus_F_contig10938:2243..22931695995611.8674963-CDS-E-fasciculatus_F_contig10938:2243..2293Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10938 2244..2293 +
1622927594.4150343-CDS-E-fasciculatus_F_contig10938:2572..26431622927594.4150343-CDS-E-fasciculatus_F_contig10938:2572..2643Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10938 2573..2643 +
1695995611.8798568-CDS-E-fasciculatus_F_contig10938:2572..26431695995611.8798568-CDS-E-fasciculatus_F_contig10938:2572..2643Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10938 2573..2643 +
1622927594.4281895-CDS-E-fasciculatus_F_contig10938:3639..40161622927594.4281895-CDS-E-fasciculatus_F_contig10938:3639..4016Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10938 3640..4016 +
1695995611.8897297-CDS-E-fasciculatus_F_contig10938:3639..40161695995611.8897297-CDS-E-fasciculatus_F_contig10938:3639..4016Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10938 3640..4016 +
1622927594.4391158-CDS-E-fasciculatus_F_contig10938:4324..44711622927594.4391158-CDS-E-fasciculatus_F_contig10938:4324..4471Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10938 4325..4471 +
1695995611.8992996-CDS-E-fasciculatus_F_contig10938:4324..44711695995611.8992996-CDS-E-fasciculatus_F_contig10938:4324..4471Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10938 4325..4471 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig10938.753.1

>prot_E-fasciculatus_F_contig10938.753.1 ID=prot_E-fasciculatus_F_contig10938.753.1|Name=mRNA_E-fasciculatus_F_contig10938.753.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=215bp
MARGTAFLALAGLMLERSTAVMDVGNEHVCATIGSSAKCWGNNRWGQLGR
GDNTTSIGDDPDEMGDNLVAVPVGGTVSEMALGEDHTCMLLDSGDVVCFG
KNDSGQLGLGDTSTRGQIAGDVGEAADLGTGLSAVAVTAGCRHTCGLLDD
GSVKCFGYNNFGQLGQGTTDNMGDDEGEMGDELPAVSLDGTVSAVAAGCD
HTCALMDDGTVMCW*
back to top

mRNA from alignment at E-fasciculatus_F_contig10938:2244..4471+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig10938.753.1 ID=mRNA_E-fasciculatus_F_contig10938.753.1|Name=mRNA_E-fasciculatus_F_contig10938.753.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2228bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10938:2244..4471+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCTCGTGGGACTGCATTCTTGGCCCTGGCGGGCCTGATGCTCGAGAG GTGGGTGCAGCAGTCCGAAGCAGTGCGCTTCCCTCAGGTTTTTCTTTTTG CAGGTTTGGTTGTTTTTGTTCGATCACCCCCAATTGCTGACGTTTCCCGT CTCAGAAGCCGTGTGCGCCGTGTTCCCTTAGTGGATGGTTGTGGTGGTTG CGTGTGTGAGTGGTAGGATTCCCCGAGGTCGTCTCGGTTTAATTATTTTT CGTTCCGAGACACGTTCCCCGGCCCTATCTTCGCCCAATGTTCTTCTTTC CACTTGGAATACATACTACTCGTCGTCAGGTCGACGGCTGTGATGGACGT GGGCAACGAGCACGTGTGCGCAACGATCGGTTCCTCTGCCAAGTGCTGGG GTGAGTCACAGCAGCCAGGCCGGCGAGAGTCTTCTGTGTGCGCCTGCTTG CTGCCCATAGCGGCGGCGTGTGTTTGGCCGTTGGCGCACACACACTTTAT TTTTCTCTCCGTGCTCCCCCGTCCAGTTGTTCTTTTTCCCGTGTGGGCGG GCCGTTTGGCACGCGGGCCTTGGCTATACCCCCTCTTTTGTCAGTAGATA GATCCAGCATCAAGGTCTCTCTCTCTTTGGGGTGGTGCATGGTAGACCAG GTCGGCAGGTAGTAGCGCGGCCGGCTTGTTTGAGGACGCTCTCTCCACTG AAAAAATGATACGGCAGCGTCACACACACGATTGGCCGGAAAATGTGTAG TACCAGCAGTTAAATAGCGTTATAAAAGCCCCCGGCGCCACGCAAACCCG TGAATGTGGTGGATCTGGTGAACGATCACTTTTTTTAGTTTCTGTTTTTT CGTTCTCGTACAAGAAGGAGAACTTTGACGGGATGCCGGCAAACATGGGT CGTGGTATGTATATGCATCTGCACAACGGCAGCATACGCGATGTTGGCGT TGCGCGCTCTCGCTCGCCCTTTCTCTCTCTGTCCACCTGCTGTTTGCATC CACCCGAACCTATACTTGTATGGGCAAAGCAAGATATATCCGCAGAGGCG GTAAAACCTAATATTCACGGTGGCTTTTCGGCGGTAATTTTAATGCCGAA TGGCTTCAATGCCGAACGGCGGTAATTTATTATAGGGTTGACGGTAGGCA GTATTGCGTAATTTGGGCGTTACGATAGCAATAGATACCTCTGTCTGCCC TTGATGCACACCAACAACGGCAGAGTACCGCCGTGACAACAGCACCGAAA GCAGTATGACCCCCCCCCCACCCTACTTCATCCCGCTTGTCATCTGGCAG AGTAGCGATGATGTCCTAACTACATTCGAGCGCACCACGTGCTGATTTCC CTTCCAACACCCTCCTTACGGTGTCCCTTACTGCCTCGCTCGCCAGGGAA CAACCGCTGGGGGCAGCTCGGTCGCGGAGACAACACCACCAGCATCGGCG ATGACCCGGACGAGATGGGGGACAACCTCGTCGCCGTCCCGGTGGGGGGC ACCGTGTCTGAAATGGCCCTGGGGGAGGACCACACGTGCATGCTCCTGGA CTCCGGAGACGTGGTGTGCTTCGGCAAGAACGACTCCGGGCAGCTCGGCC TCGGGGACACCTCGACCCGCGGCCAGATCGCGGGGGACGTGGGCGAGGCG GCCGACCTGGGCACGGGACTGTCGGCGGTGGCGGTGACGGCGGGGTGCCG CCACACCTGCGGCTTGCTCGACGACGGGTCCGTCAAGTGCTTCGGGTACA ACAACTTCGGGCAGCTGGGCCAGGTGAGGAGCTGATGCCCCTCCAAGCGG CGGGAGCAACAAGAATGTGGGATGTGATACATGGGGGACGGGCACTGGAC ATGCTGTCCAGTGTTTGAAACCGTCTCCTGGGTGTTGGGTGCAGATCCTG GCCGTGTTTGTTGTATTTTGGTGTCTTAATCGGGAACATATTTGTAGAAA GGCTATATGCTATTTCTGGTCGGGTTGGCACCTTTTTTCGAATGCTAGAC ACCCCCAACGCTACACCAAATCTCGTTTCCCGTGCGATTCACTAACACGC AACGACCCCCACCCCCCGAACGGCTTCACAGGGCACCACGGACAACATGG GAGACGACGAGGGCGAGATGGGAGACGAACTTCCCGCGGTGTCTCTCGAC GGCACCGTGTCCGCCGTGGCGGCCGGCTGCGACCACACCTGCGCGCTCAT GGACGACGGCACCGTCATGTGCTGGTGA
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10938:2244..4471+

>mRNA_E-fasciculatus_F_contig10938.753.1 ID=mRNA_E-fasciculatus_F_contig10938.753.1|Name=mRNA_E-fasciculatus_F_contig10938.753.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1290bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10938:2244..4471+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCTCGTGGGACTGCATTCTTGGCCCTGGCGGGCCTGATGCTCGAGAG
ATGGCTCGTGGGACTGCATTCTTGGCCCTGGCGGGCCTGATGCTCGAGAG
GTCGACGGCTGTGATGGACGTGGGCAACGAGCACGTGTGCGCAACGATCG
GTTCCTCTGCCAAGTGCTGGGGTCGACGGCTGTGATGGACGTGGGCAACG
AGCACGTGTGCGCAACGATCGGTTCCTCTGCCAAGTGCTGGGGGAACAAC
CGCTGGGGGCAGCTCGGTCGCGGAGACAACACCACCAGCATCGGCGATGA
CCCGGACGAGATGGGGGACAACCTCGTCGCCGTCCCGGTGGGGGGCACCG
TGTCTGAAATGGCCCTGGGGGAGGACCACACGTGCATGCTCCTGGACTCC
GGAGACGTGGTGTGCTTCGGCAAGAACGACTCCGGGCAGCTCGGCCTCGG
GGACACCTCGACCCGCGGCCAGATCGCGGGGGACGTGGGCGAGGCGGCCG
ACCTGGGCACGGGACTGTCGGCGGTGGCGGTGACGGCGGGGTGCCGCCAC
ACCTGCGGCTTGCTCGACGACGGGTCCGTCAAGTGCTTCGGGTACAACAA
CTTCGGGCAGCTGGGCCAGGGAACAACCGCTGGGGGCAGCTCGGTCGCGG
AGACAACACCACCAGCATCGGCGATGACCCGGACGAGATGGGGGACAACC
TCGTCGCCGTCCCGGTGGGGGGCACCGTGTCTGAAATGGCCCTGGGGGAG
GACCACACGTGCATGCTCCTGGACTCCGGAGACGTGGTGTGCTTCGGCAA
GAACGACTCCGGGCAGCTCGGCCTCGGGGACACCTCGACCCGCGGCCAGA
TCGCGGGGGACGTGGGCGAGGCGGCCGACCTGGGCACGGGACTGTCGGCG
GTGGCGGTGACGGCGGGGTGCCGCCACACCTGCGGCTTGCTCGACGACGG
GTCCGTCAAGTGCTTCGGGTACAACAACTTCGGGCAGCTGGGCCAGGGCA
CCACGGACAACATGGGAGACGACGAGGGCGAGATGGGAGACGAACTTCCC
GCGGTGTCTCTCGACGGCACCGTGTCCGCCGTGGCGGCCGGCTGCGACCA
CACCTGCGCGCTCATGGACGACGGCACCGTCATGTGCTGGTGAGGCACCA
CGGACAACATGGGAGACGACGAGGGCGAGATGGGAGACGAACTTCCCGCG
GTGTCTCTCGACGGCACCGTGTCCGCCGTGGCGGCCGGCTGCGACCACAC
CTGCGCGCTCATGGACGACGGCACCGTCATGTGCTGGTGA
back to top