mRNA_E-fasciculatus_F_contig10938.752.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig10938.752.1
Unique NamemRNA_E-fasciculatus_F_contig10938.752.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig10938.752.1 vs. uniprot
Match: A0A6H5L0L6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0L6_9PHAE)

HSP 1 Score: 184 bits (466), Expect = 8.340e-56
Identity = 93/95 (97.89%), Postives = 94/95 (98.95%), Query Frame = 1
Query:    1 SGTLQVARRPADYSDRRSDGYTEPLEVYVLGTSHASEKSAGHVRRVVEAVRPQSVVVELCKSRAGLMMPVAPENEAGANNPLAMSGENFASSLAR 285
            SGTLQVARRPADYSDRRSDGYTEPLEVYVLGTSHASE SAGHVRRVVEAVRPQSVVVELCKSRAGLMMPVAPE+EAGANNPLAMSGENFASSLAR
Sbjct:  104 SGTLQVARRPADYSDRRSDGYTEPLEVYVLGTSHASETSAGHVRRVVEAVRPQSVVVELCKSRAGLMMPVAPESEAGANNPLAMSGENFASSLAR 198          
BLAST of mRNA_E-fasciculatus_F_contig10938.752.1 vs. uniprot
Match: D7FS36_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS36_ECTSI)

HSP 1 Score: 184 bits (468), Expect = 4.390e-54
Identity = 93/95 (97.89%), Postives = 94/95 (98.95%), Query Frame = 1
Query:    1 SGTLQVARRPADYSDRRSDGYTEPLEVYVLGTSHASEKSAGHVRRVVEAVRPQSVVVELCKSRAGLMMPVAPENEAGANNPLAMSGENFASSLAR 285
            SGTLQVARRPADYSDRRSDGYTEPLEVYVLGTSHASE SAGHVRRVVEAVRPQSVVVELCKSRAGLMMPVAPENEAG+NNPLAMSGENFASSLAR
Sbjct:  105 SGTLQVARRPADYSDRRSDGYTEPLEVYVLGTSHASETSAGHVRRVVEAVRPQSVVVELCKSRAGLMMPVAPENEAGSNNPLAMSGENFASSLAR 199          
BLAST of mRNA_E-fasciculatus_F_contig10938.752.1 vs. uniprot
Match: A0A2K1IEV6_PHYPA (Uncharacterized protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1IEV6_PHYPA)

HSP 1 Score: 104 bits (259), Expect = 2.610e-24
Identity = 49/96 (51.04%), Postives = 71/96 (73.96%), Query Frame = 1
Query:    4 GTLQVARRPADYSDRRSDGYTEPLEVYVLGTSHASEKSAGHVRRVVEAVRPQSVVVELCKSRAGLMMPVAPENEA--GANNPLAMSGENFASSLAR 285
            GTL + +RP DY +RRSDGY EP  VY++GT+H S+ SA  V RV+ AV+P++VV+ELC+SRAG+M   A  ++   G+ N ++MSG+NF S++ R
Sbjct:   94 GTLVIVKRPPDYVERRSDGYVEPEVVYIVGTAHMSKLSANQVTRVINAVQPENVVIELCRSRAGIMYDEAQTSDVKQGSKNLMSMSGDNFGSAVGR 189          
BLAST of mRNA_E-fasciculatus_F_contig10938.752.1 vs. uniprot
Match: A0A7S1X1G4_9CHLO (Hypothetical protein n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1X1G4_9CHLO)

HSP 1 Score: 98.2 bits (243), Expect = 2.430e-22
Identity = 48/100 (48.00%), Postives = 70/100 (70.00%), Query Frame = 1
Query:    1 SGTLQVARRPADYSDRRSDGYTEPLEVYVLGTSHASEKSAGHVRRVVEAVRPQSVVVELCKSRAGLMMPVAPENEAG---ANNPLAMSGENFASSLARWA 291
            +G L V  RPADY +RR DGY EP E++++GT+H S++S   V RV+ AV+PQ+VVVELCKSRAG+M     ++E+    A N + +SG +F +++ R A
Sbjct:   19 AGVLHVVLRPADYKERRVDGYQEPKEIFLVGTAHMSKRSCDDVARVIAAVKPQNVVVELCKSRAGVMYEDEAQSESDRVKATNQMGLSGSSFLAAVGRSA 118          
BLAST of mRNA_E-fasciculatus_F_contig10938.752.1 vs. uniprot
Match: A0A8J9SBL0_9CHLO (TraB domain-containing protein n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9SBL0_9CHLO)

HSP 1 Score: 97.4 bits (241), Expect = 3.310e-22
Identity = 49/98 (50.00%), Postives = 70/98 (71.43%), Query Frame = 1
Query:    1 SGTLQVARRPADYSDRRSDGYTEPLEVYVLGTSHASEKSAGHVRRVVEAVRPQSVVVELCKSRAGLMM-PVAPENEAGANNPLAMSGENFASSLARWA 291
            +G L   +RPADY +RR DGY EP  ++V+GT+H SE+SA  VRRVVEAV+P++VV+E+CKSRA ++  P    +     N +++SG NFA++L R A
Sbjct:    3 TGVLAAVQRPADYVERRDDGYREPELLFVVGTAHFSEQSADDVRRVVEAVQPENVVLEVCKSRAAVIYEPTQSASHGRTPNDMSLSGTNFAAALLRSA 100          
BLAST of mRNA_E-fasciculatus_F_contig10938.752.1 vs. uniprot
Match: A0A176VHS1_MARPO (Uncharacterized protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A176VHS1_MARPO)

HSP 1 Score: 96.3 bits (238), Expect = 2.760e-21
Identity = 54/107 (50.47%), Postives = 71/107 (66.36%), Query Frame = 1
Query:    1 SGTLQVARRPADYSDRRSDGYTEPLEVYVLGTSHASEKSAGHVRRVVEAVRPQSVVVELCKSRAGLMMP---------VAPENEAGAN---NPLAMSGENFASSLAR 285
            +GTL V +RP DY +RRSDGY EP  V+V+GT+H S  SA  V RVV+AVRP++VVVELC+SRAG+M           V  E   G     N ++MSGENF ++++R
Sbjct:  118 NGTLVVVKRPKDYVERRSDGYREPEMVFVVGTAHMSVVSATEVERVVKAVRPENVVVELCRSRAGIMYDEPTIKGSDSVDGEEIRGTQKEKNLMSMSGENFGAAMSR 224          
BLAST of mRNA_E-fasciculatus_F_contig10938.752.1 vs. uniprot
Match: A0A7S0BSK4_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BSK4_9RHOD)

HSP 1 Score: 86.3 bits (212), Expect = 1.100e-18
Identity = 43/87 (49.43%), Postives = 59/87 (67.82%), Query Frame = 1
Query:    1 SGTLQVARRPADYSDRRSDGYTEPLEVYVLGTSHASEKSAGHVRRVVEAVRPQSVVVELCKSRAGLMMPVAPENEAGANNPLAMSGE 261
            SG L   +R ADY +RR DGY EPL ++++GT H SEKSA  V RVV A++P++VVVELC+SR+GL+         G  + + +SGE
Sbjct:   46 SGVLVHKKRRADYVERRVDGYVEPLNIFIVGTCHHSEKSAQDVARVVNAIKPETVVVELCRSRSGLLY--------GQTSEVGLSGE 124          
BLAST of mRNA_E-fasciculatus_F_contig10938.752.1 vs. uniprot
Match: A0A0D6R8Y6_ARACU (Uncharacterized protein n=1 Tax=Araucaria cunninghamii TaxID=56994 RepID=A0A0D6R8Y6_ARACU)

HSP 1 Score: 87.8 bits (216), Expect = 3.280e-18
Identity = 47/102 (46.08%), Postives = 65/102 (63.73%), Query Frame = 1
Query:    4 GTLQVARRPADYSDRRSDGYTEPLEVYVLGTSHASEKSAGHVRRVVEAVRPQSVVVELCKSRAGLM--------MPVAPENEAGANNPLAMSGENFASSLAR 285
            G + V ++ ADY +RR+DGY EP  + VLGTSH S  SA +V RV+ AVRPQ+VVVELC+SR G+M        + + PE +    N  +M GE+F  ++ R
Sbjct:   99 GEIVVVKKRADYVERRTDGYVEPDLIIVLGTSHVSRDSAANVERVLRAVRPQNVVVELCRSRVGIMYSSKSTHSIKLQPEKKQK-TNLFSMGGESFLGAMGR 199          
BLAST of mRNA_E-fasciculatus_F_contig10938.752.1 vs. uniprot
Match: A0A388KKW6_CHABU (Integrase catalytic domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388KKW6_CHABU)

HSP 1 Score: 87.8 bits (216), Expect = 4.940e-18
Identity = 50/115 (43.48%), Postives = 68/115 (59.13%), Query Frame = 1
Query:    4 GTLQVARRPADYSDRRSDGYTEPLEVYVLGTSHASEKSAGHVRRVVEAVRPQSVVVELCKSRAGLMM-------PVAPENEAGA--------------NNPLAMSGENFASSLAR 285
            G+L V  RP  Y +RR DGY EP  V ++GT+H S KSA  V RV+  VRP++VVVELC+SRAG+M        P   E + GA              +N +++SGE+F S++AR
Sbjct: 1066 GSLVVVPRPEGYVERRVDGYREPEVVMIMGTAHMSSKSADDVSRVISTVRPENVVVELCRSRAGIMYSSDGRSTPDEREGDGGAAGRAQREGGKTASKSNLMSLSGESFVSAMAR 1180          
BLAST of mRNA_E-fasciculatus_F_contig10938.752.1 vs. uniprot
Match: A0A7S2ZD97_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZD97_9RHOD)

HSP 1 Score: 84.3 bits (207), Expect = 5.860e-18
Identity = 41/87 (47.13%), Postives = 59/87 (67.82%), Query Frame = 1
Query:    1 SGTLQVARRPADYSDRRSDGYTEPLEVYVLGTSHASEKSAGHVRRVVEAVRPQSVVVELCKSRAGLMMPVAPENEAGANNPLAMSGE 261
            SG L   +R ADY +RR DGY EPL+++++GT H S KSA  V RVV A++P++VVVELC+SR+G++         G  + + +SGE
Sbjct:   51 SGVLVHRKRRADYVERRVDGYVEPLDIFIVGTCHHSAKSAEDVTRVVNAIKPETVVVELCRSRSGMLY--------GQESEMGLSGE 129          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10938.752.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L0L6_9PHAE8.340e-5697.89Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D7FS36_ECTSI4.390e-5497.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A2K1IEV6_PHYPA2.610e-2451.04Uncharacterized protein n=2 Tax=Physcomitrium pate... [more]
A0A7S1X1G4_9CHLO2.430e-2248.00Hypothetical protein n=1 Tax=Tetraselmis chuii Tax... [more]
A0A8J9SBL0_9CHLO3.310e-2250.00TraB domain-containing protein n=1 Tax=Coccomyxa s... [more]
A0A176VHS1_MARPO2.760e-2150.47Uncharacterized protein n=2 Tax=Marchantia polymor... [more]
A0A7S0BSK4_9RHOD1.100e-1849.43Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A0D6R8Y6_ARACU3.280e-1846.08Uncharacterized protein n=1 Tax=Araucaria cunningh... [more]
A0A388KKW6_CHABU4.940e-1843.48Integrase catalytic domain-containing protein n=1 ... [more]
A0A7S2ZD97_9RHOD5.860e-1847.13Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10938contigE-fasciculatus_F_contig10938:46..999 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score187.2
Seed ortholog evalue3.9e-45
Seed eggNOG ortholog2880.D7FS36
EggNOG free text desc.TraB family
EggNOG OGsCOG1916@1,KOG2860@2759
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size312
Cds size312
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927594.322013-CDS-E-fasciculatus_F_contig10938:45..1831622927594.322013-CDS-E-fasciculatus_F_contig10938:45..183Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10938 46..183 -
1695995611.8415787-CDS-E-fasciculatus_F_contig10938:45..1831695995611.8415787-CDS-E-fasciculatus_F_contig10938:45..183Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10938 46..183 -
1622927594.3353436-CDS-E-fasciculatus_F_contig10938:825..9991622927594.3353436-CDS-E-fasciculatus_F_contig10938:825..999Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10938 826..999 -
1695995611.8526447-CDS-E-fasciculatus_F_contig10938:825..9991695995611.8526447-CDS-E-fasciculatus_F_contig10938:825..999Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10938 826..999 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10938.752.1prot_E-fasciculatus_F_contig10938.752.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig10938 46..999 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig10938.752.1

>prot_E-fasciculatus_F_contig10938.752.1 ID=prot_E-fasciculatus_F_contig10938.752.1|Name=mRNA_E-fasciculatus_F_contig10938.752.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=104bp
SGTLQVARRPADYSDRRSDGYTEPLEVYVLGTSHASEKSAGHVRRVVEAV
RPQSVVVELCKSRAGLMMPVAPENEAGANNPLAMSGENFASSLARWANST
YQG*
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mRNA from alignment at E-fasciculatus_F_contig10938:46..999-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig10938.752.1 ID=mRNA_E-fasciculatus_F_contig10938.752.1|Name=mRNA_E-fasciculatus_F_contig10938.752.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=954bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10938:46..999- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TCAGGCACCTTGCAGGTGGCGAGGAGACCCGCCGACTACTCCGACAGGCG CAGCGACGGATACACGGAGCCCTTGGAGGTCTACGTCTTGGGCACCAGCC ACGCCTCGGAGAAAAGCGCTGGTCATGTTCGCCGGGTGGTGGAGGCAGTC CGCCCGCAGAGCGTCGTGGTGGAGGTGTGTGAACCCTGTGTGTGACCCTT GCCCTAAAACCCAACTTCACCAATTGCATACTATATCCAACATGTTTCCC GAAACGAAAAATCCCGCGAAGGCTACTATACCACGGCGGCCGCGGTTTTT GCCGTCACTGCTGTGTGCCAGTACTGCGTGAACTTGATCCAACGCAATCA CGTGGCCTCAAATGAGAGGGGTGTGCGATACAGCTAGCTGCTGTCGGGGT AGTGCTGCGGATGCTCGGAAATGCTAATGTACCGTGGGGGGTGGCGGCCA CAGACCGATCAAGTGGCGCCGACAGGGGTGGTGCTGCTGTTGGAAGTTCA TCGTACCATCTTGCCCTCTACAGCTACATCAATGTGTGCAGTGCGAGTTT TGCAACTGGTGCTTGCAGTTGACGAGCTCGCACTCATCACTCAATGCAAC AGGAATCTGTGAACGTCTTGTAGTGCCGTCGAATTTTAGTAGCATGCGAA GCATGTGGCTCGCATGGTGGGCTTTACCACAATCCAATAATCGAAACTTG TCCCACACACACCATTTTCGCTAGCATGACAGGGCGCTAGTACTCCAGCT GAGTCTCGTGTTTCTCTTCCCCTCCCCTACCCCTTGTCCTTTCCCAAAAA CATTATTTGCTACAAGTTGTGCAAGTCCCGAGCAGGACTCATGATGCCCG TCGCCCCAGAGAACGAGGCAGGAGCTAACAATCCCTTGGCGATGTCGGGG GAAAACTTCGCCTCTTCGCTGGCCAGGTGGGCGAATAGCACGTACCAGGG GTAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10938:46..999-

>mRNA_E-fasciculatus_F_contig10938.752.1 ID=mRNA_E-fasciculatus_F_contig10938.752.1|Name=mRNA_E-fasciculatus_F_contig10938.752.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=624bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10938:46..999- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TCAGGCACCTTGCAGGTGGCGAGGAGACCCGCCGACTACTCCGACAGGCG
CAGCGACGGATACACGGAGCCCTTGGAGGTCTACGTCTTGGGCACCAGCC
ACGCCTCGGAGAAAAGCGCTGGTCATGTTCGCCGGGTGGTGGAGGCAGTC
CGCCCGCAGAGCGTCGTGGTGGAGTCAGGCACCTTGCAGGTGGCGAGGAG
ACCCGCCGACTACTCCGACAGGCGCAGCGACGGATACACGGAGCCCTTGG
AGGTCTACGTCTTGGGCACCAGCCACGCCTCGGAGAAAAGCGCTGGTCAT
GTTCGCCGGGTGGTGGAGGCAGTCCGCCCGCAGAGCGTCGTGGTGGAGTT
GTGCAAGTCCCGAGCAGGACTCATGATGCCCGTCGCCCCAGAGAACGAGG
CAGGAGCTAACAATCCCTTGGCGATGTCGGGGGAAAACTTCGCCTCTTCG
CTGGCCAGGTGGGCGAATAGCACGTACCAGGGGTAGTTGTGCAAGTCCCG
AGCAGGACTCATGATGCCCGTCGCCCCAGAGAACGAGGCAGGAGCTAACA
ATCCCTTGGCGATGTCGGGGGAAAACTTCGCCTCTTCGCTGGCCAGGTGG
GCGAATAGCACGTACCAGGGGTAG
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