mRNA_E-fasciculatus_F_contig10938.752.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig10938.752.1 vs. uniprot
Match: A0A6H5L0L6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0L6_9PHAE) HSP 1 Score: 184 bits (466), Expect = 8.340e-56 Identity = 93/95 (97.89%), Postives = 94/95 (98.95%), Query Frame = 1
Query: 1 SGTLQVARRPADYSDRRSDGYTEPLEVYVLGTSHASEKSAGHVRRVVEAVRPQSVVVELCKSRAGLMMPVAPENEAGANNPLAMSGENFASSLAR 285
SGTLQVARRPADYSDRRSDGYTEPLEVYVLGTSHASE SAGHVRRVVEAVRPQSVVVELCKSRAGLMMPVAPE+EAGANNPLAMSGENFASSLAR
Sbjct: 104 SGTLQVARRPADYSDRRSDGYTEPLEVYVLGTSHASETSAGHVRRVVEAVRPQSVVVELCKSRAGLMMPVAPESEAGANNPLAMSGENFASSLAR 198
BLAST of mRNA_E-fasciculatus_F_contig10938.752.1 vs. uniprot
Match: D7FS36_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS36_ECTSI) HSP 1 Score: 184 bits (468), Expect = 4.390e-54 Identity = 93/95 (97.89%), Postives = 94/95 (98.95%), Query Frame = 1
Query: 1 SGTLQVARRPADYSDRRSDGYTEPLEVYVLGTSHASEKSAGHVRRVVEAVRPQSVVVELCKSRAGLMMPVAPENEAGANNPLAMSGENFASSLAR 285
SGTLQVARRPADYSDRRSDGYTEPLEVYVLGTSHASE SAGHVRRVVEAVRPQSVVVELCKSRAGLMMPVAPENEAG+NNPLAMSGENFASSLAR
Sbjct: 105 SGTLQVARRPADYSDRRSDGYTEPLEVYVLGTSHASETSAGHVRRVVEAVRPQSVVVELCKSRAGLMMPVAPENEAGSNNPLAMSGENFASSLAR 199
BLAST of mRNA_E-fasciculatus_F_contig10938.752.1 vs. uniprot
Match: A0A2K1IEV6_PHYPA (Uncharacterized protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1IEV6_PHYPA) HSP 1 Score: 104 bits (259), Expect = 2.610e-24 Identity = 49/96 (51.04%), Postives = 71/96 (73.96%), Query Frame = 1
Query: 4 GTLQVARRPADYSDRRSDGYTEPLEVYVLGTSHASEKSAGHVRRVVEAVRPQSVVVELCKSRAGLMMPVAPENEA--GANNPLAMSGENFASSLAR 285
GTL + +RP DY +RRSDGY EP VY++GT+H S+ SA V RV+ AV+P++VV+ELC+SRAG+M A ++ G+ N ++MSG+NF S++ R
Sbjct: 94 GTLVIVKRPPDYVERRSDGYVEPEVVYIVGTAHMSKLSANQVTRVINAVQPENVVIELCRSRAGIMYDEAQTSDVKQGSKNLMSMSGDNFGSAVGR 189
BLAST of mRNA_E-fasciculatus_F_contig10938.752.1 vs. uniprot
Match: A0A7S1X1G4_9CHLO (Hypothetical protein n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1X1G4_9CHLO) HSP 1 Score: 98.2 bits (243), Expect = 2.430e-22 Identity = 48/100 (48.00%), Postives = 70/100 (70.00%), Query Frame = 1
Query: 1 SGTLQVARRPADYSDRRSDGYTEPLEVYVLGTSHASEKSAGHVRRVVEAVRPQSVVVELCKSRAGLMMPVAPENEAG---ANNPLAMSGENFASSLARWA 291
+G L V RPADY +RR DGY EP E++++GT+H S++S V RV+ AV+PQ+VVVELCKSRAG+M ++E+ A N + +SG +F +++ R A
Sbjct: 19 AGVLHVVLRPADYKERRVDGYQEPKEIFLVGTAHMSKRSCDDVARVIAAVKPQNVVVELCKSRAGVMYEDEAQSESDRVKATNQMGLSGSSFLAAVGRSA 118
BLAST of mRNA_E-fasciculatus_F_contig10938.752.1 vs. uniprot
Match: A0A8J9SBL0_9CHLO (TraB domain-containing protein n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9SBL0_9CHLO) HSP 1 Score: 97.4 bits (241), Expect = 3.310e-22 Identity = 49/98 (50.00%), Postives = 70/98 (71.43%), Query Frame = 1
Query: 1 SGTLQVARRPADYSDRRSDGYTEPLEVYVLGTSHASEKSAGHVRRVVEAVRPQSVVVELCKSRAGLMM-PVAPENEAGANNPLAMSGENFASSLARWA 291
+G L +RPADY +RR DGY EP ++V+GT+H SE+SA VRRVVEAV+P++VV+E+CKSRA ++ P + N +++SG NFA++L R A
Sbjct: 3 TGVLAAVQRPADYVERRDDGYREPELLFVVGTAHFSEQSADDVRRVVEAVQPENVVLEVCKSRAAVIYEPTQSASHGRTPNDMSLSGTNFAAALLRSA 100
BLAST of mRNA_E-fasciculatus_F_contig10938.752.1 vs. uniprot
Match: A0A176VHS1_MARPO (Uncharacterized protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A176VHS1_MARPO) HSP 1 Score: 96.3 bits (238), Expect = 2.760e-21 Identity = 54/107 (50.47%), Postives = 71/107 (66.36%), Query Frame = 1
Query: 1 SGTLQVARRPADYSDRRSDGYTEPLEVYVLGTSHASEKSAGHVRRVVEAVRPQSVVVELCKSRAGLMMP---------VAPENEAGAN---NPLAMSGENFASSLAR 285
+GTL V +RP DY +RRSDGY EP V+V+GT+H S SA V RVV+AVRP++VVVELC+SRAG+M V E G N ++MSGENF ++++R
Sbjct: 118 NGTLVVVKRPKDYVERRSDGYREPEMVFVVGTAHMSVVSATEVERVVKAVRPENVVVELCRSRAGIMYDEPTIKGSDSVDGEEIRGTQKEKNLMSMSGENFGAAMSR 224
BLAST of mRNA_E-fasciculatus_F_contig10938.752.1 vs. uniprot
Match: A0A7S0BSK4_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BSK4_9RHOD) HSP 1 Score: 86.3 bits (212), Expect = 1.100e-18 Identity = 43/87 (49.43%), Postives = 59/87 (67.82%), Query Frame = 1
Query: 1 SGTLQVARRPADYSDRRSDGYTEPLEVYVLGTSHASEKSAGHVRRVVEAVRPQSVVVELCKSRAGLMMPVAPENEAGANNPLAMSGE 261
SG L +R ADY +RR DGY EPL ++++GT H SEKSA V RVV A++P++VVVELC+SR+GL+ G + + +SGE
Sbjct: 46 SGVLVHKKRRADYVERRVDGYVEPLNIFIVGTCHHSEKSAQDVARVVNAIKPETVVVELCRSRSGLLY--------GQTSEVGLSGE 124
BLAST of mRNA_E-fasciculatus_F_contig10938.752.1 vs. uniprot
Match: A0A0D6R8Y6_ARACU (Uncharacterized protein n=1 Tax=Araucaria cunninghamii TaxID=56994 RepID=A0A0D6R8Y6_ARACU) HSP 1 Score: 87.8 bits (216), Expect = 3.280e-18 Identity = 47/102 (46.08%), Postives = 65/102 (63.73%), Query Frame = 1
Query: 4 GTLQVARRPADYSDRRSDGYTEPLEVYVLGTSHASEKSAGHVRRVVEAVRPQSVVVELCKSRAGLM--------MPVAPENEAGANNPLAMSGENFASSLAR 285
G + V ++ ADY +RR+DGY EP + VLGTSH S SA +V RV+ AVRPQ+VVVELC+SR G+M + + PE + N +M GE+F ++ R
Sbjct: 99 GEIVVVKKRADYVERRTDGYVEPDLIIVLGTSHVSRDSAANVERVLRAVRPQNVVVELCRSRVGIMYSSKSTHSIKLQPEKKQK-TNLFSMGGESFLGAMGR 199
BLAST of mRNA_E-fasciculatus_F_contig10938.752.1 vs. uniprot
Match: A0A388KKW6_CHABU (Integrase catalytic domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388KKW6_CHABU) HSP 1 Score: 87.8 bits (216), Expect = 4.940e-18 Identity = 50/115 (43.48%), Postives = 68/115 (59.13%), Query Frame = 1
Query: 4 GTLQVARRPADYSDRRSDGYTEPLEVYVLGTSHASEKSAGHVRRVVEAVRPQSVVVELCKSRAGLMM-------PVAPENEAGA--------------NNPLAMSGENFASSLAR 285
G+L V RP Y +RR DGY EP V ++GT+H S KSA V RV+ VRP++VVVELC+SRAG+M P E + GA +N +++SGE+F S++AR
Sbjct: 1066 GSLVVVPRPEGYVERRVDGYREPEVVMIMGTAHMSSKSADDVSRVISTVRPENVVVELCRSRAGIMYSSDGRSTPDEREGDGGAAGRAQREGGKTASKSNLMSLSGESFVSAMAR 1180
BLAST of mRNA_E-fasciculatus_F_contig10938.752.1 vs. uniprot
Match: A0A7S2ZD97_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZD97_9RHOD) HSP 1 Score: 84.3 bits (207), Expect = 5.860e-18 Identity = 41/87 (47.13%), Postives = 59/87 (67.82%), Query Frame = 1
Query: 1 SGTLQVARRPADYSDRRSDGYTEPLEVYVLGTSHASEKSAGHVRRVVEAVRPQSVVVELCKSRAGLMMPVAPENEAGANNPLAMSGE 261
SG L +R ADY +RR DGY EPL+++++GT H S KSA V RVV A++P++VVVELC+SR+G++ G + + +SGE
Sbjct: 51 SGVLVHRKRRADYVERRVDGYVEPLDIFIVGTCHHSAKSAEDVTRVVNAIKPETVVVELCRSRSGMLY--------GQESEMGLSGE 129 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10938.752.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig10938.752.1 >prot_E-fasciculatus_F_contig10938.752.1 ID=prot_E-fasciculatus_F_contig10938.752.1|Name=mRNA_E-fasciculatus_F_contig10938.752.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=104bp SGTLQVARRPADYSDRRSDGYTEPLEVYVLGTSHASEKSAGHVRRVVEAVback to top mRNA from alignment at E-fasciculatus_F_contig10938:46..999- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig10938.752.1 ID=mRNA_E-fasciculatus_F_contig10938.752.1|Name=mRNA_E-fasciculatus_F_contig10938.752.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=954bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10938:46..999- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10938:46..999- >mRNA_E-fasciculatus_F_contig10938.752.1 ID=mRNA_E-fasciculatus_F_contig10938.752.1|Name=mRNA_E-fasciculatus_F_contig10938.752.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=624bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10938:46..999- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |