mRNA_E-fasciculatus_F_contig10937.750.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig10937.750.1
Unique NamemRNA_E-fasciculatus_F_contig10937.750.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig10937.750.1 vs. uniprot
Match: D8LMX2_ECTSI (Plectin isoform 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMX2_ECTSI)

HSP 1 Score: 197 bits (500), Expect = 2.820e-54
Identity = 129/135 (95.56%), Postives = 131/135 (97.04%), Query Frame = 2 
Query:    2 VRERSAERLLAAERLGQGLTRWCTNRKASAFYRIVSGVTMVAAESDVRERTRRALREAGEGAXXXXXXXXXXXXXXVMVKAEDELAEAERGFAEERDRLLEEAEAAAAVSATQVQTIEELRALETGTRRELEKAR 406
            VRER+AERLLAAERLGQGLTRWCTNR+ASAFYRIVSGVTMVAAESDVRERTRRALREAGEG XXXXXXXXXXXXXX  VKAEDELAEAER FAEERDRLLEEAEAAAAVSATQVQTIEELRALETGTRRELEKAR
Sbjct: 1392 VRERAAERLLAAERLGQGLTRWCTNRRASAFYRIVSGVTMVAAESDVRERTRRALREAGEGXXXXXXXXXXXXXXXXXVKAEDELAEAERVFAEERDRLLEEAEAAAAVSATQVQTIEELRALETGTRRELEKAR 1526
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10937.750.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LMX2_ECTSI2.820e-5495.56Plectin isoform 1 n=2 Tax=Ectocarpus TaxID=2879 Re... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10937contigE-fasciculatus_F_contig10937:56..1794 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score124.4
Seed ortholog evalue4.6e-26
Seed eggNOG ortholog2880.D8LMX2
EggNOG OGs28KYD@1,2QTF4@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons4
Model size678
Cds size462
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10937.750.1prot_E-fasciculatus_F_contig10937.750.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig10937 174..1696 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927594.1612487-UTR-E-fasciculatus_F_contig10937:55..1731622927594.1612487-UTR-E-fasciculatus_F_contig10937:55..173Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10937 56..173 +
1695995611.7723331-UTR-E-fasciculatus_F_contig10937:55..1731695995611.7723331-UTR-E-fasciculatus_F_contig10937:55..173Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10937 56..173 +
1622927594.2827296-UTR-E-fasciculatus_F_contig10937:1696..17941622927594.2827296-UTR-E-fasciculatus_F_contig10937:1696..1794Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10937 1697..1794 +
1695995611.8302574-UTR-E-fasciculatus_F_contig10937:1696..17941695995611.8302574-UTR-E-fasciculatus_F_contig10937:1696..1794Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10937 1697..1794 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927594.1763566-CDS-E-fasciculatus_F_contig10937:173..2691622927594.1763566-CDS-E-fasciculatus_F_contig10937:173..269Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10937 174..269 +
1695995611.7849462-CDS-E-fasciculatus_F_contig10937:173..2691695995611.7849462-CDS-E-fasciculatus_F_contig10937:173..269Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10937 174..269 +
1622927594.1933074-CDS-E-fasciculatus_F_contig10937:584..7751622927594.1933074-CDS-E-fasciculatus_F_contig10937:584..775Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10937 585..775 +
1695995611.795378-CDS-E-fasciculatus_F_contig10937:584..7751695995611.795378-CDS-E-fasciculatus_F_contig10937:584..775Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10937 585..775 +
1622927594.2487042-CDS-E-fasciculatus_F_contig10937:1103..11781622927594.2487042-CDS-E-fasciculatus_F_contig10937:1103..1178Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10937 1104..1178 +
1695995611.8088403-CDS-E-fasciculatus_F_contig10937:1103..11781695995611.8088403-CDS-E-fasciculatus_F_contig10937:1103..1178Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10937 1104..1178 +
1622927594.263519-CDS-E-fasciculatus_F_contig10937:1596..16961622927594.263519-CDS-E-fasciculatus_F_contig10937:1596..1696Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10937 1597..1696 +
1695995611.8200164-CDS-E-fasciculatus_F_contig10937:1596..16961695995611.8200164-CDS-E-fasciculatus_F_contig10937:1596..1696Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10937 1597..1696 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig10937.750.1

>prot_E-fasciculatus_F_contig10937.750.1 ID=prot_E-fasciculatus_F_contig10937.750.1|Name=mRNA_E-fasciculatus_F_contig10937.750.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=154bp
MVAAESDVRERTRRALREAGEGARRAQKAAVEDAQRAVMVKAEDELAEAE
RGFAEERDRLLEEAEAAAAVSATQVQTIEELRALETGTRRELEKARTPRG
IGRRRNERHRRRNFERRSGLRRRSPARRKPAKKPTPRRRKNRTKSGGVCC
ARS*
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mRNA from alignment at E-fasciculatus_F_contig10937:56..1794+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig10937.750.1 ID=mRNA_E-fasciculatus_F_contig10937.750.1|Name=mRNA_E-fasciculatus_F_contig10937.750.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1739bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10937:56..1794+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGTACGAGAACGCTCTGCCGAACGCCTTCTTGCCGCCGAGCGGCTGGGGC
AAGGGCTAACGCGGTGGTGCACCAACAGGAAAGCGTCCGCCTTCTACCGT
ATCGTGAGCGGGGTGACGATGGTGGCGGCCGAGAGTGACGTTAGAGAACG
CACCCGAAGAGCTCTCAGGGAGGCCGGGGAGGGAGCGCGTAGGGCGCAGA
AGGCGGCGGTCGAGGCAAGGTTTTCCTTGACTGTGTTGTCGGGTACCTGT
TAGCGGCCGAATGGAGCGCACCTTTGTTTGGGTTCCCCGGATTTTGTGGG
CTTCTTACGTAACTTGAGACTATCGCCTGGAATCGTCTTAGCTACAGAGC
TATTCCGACATGTTTTCTTGTTAGAATGCTGTGTTGTTGTTGTTGTCCTC
GTCGTTGTTGTCGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGT
TGCTATTCTACAACACGGAAATTTCCACCACAAAACAAGGGACGATAGCA
ACAACAGGAGCACCATCACACCAACACAGGATGCTCAAAGAGCGGTGATG
GTGAAGGCTGAAGACGAACTCGCGGAGGCCGAGCGAGGCTTCGCCGAGGA
GCGAGACAGGCTGCTGGAGGAAGCCGAAGCCGCGGCGGCGGTTTCCGCGA
CCCAGGTGCAGACCATCGAAGAGCTGAGGGCGCTCGAGACAGGAACGAGA
CGCGAGCTGGAGAAAGCCAGGCAAGAAGTAGGACAGCGCGAGAGCCAGAT
GATTGGTCCAATACTTGTCAGACACGTAGGGCCAATTCATTCTGAAGAGC
ATGGTAAGGGCAAGCGTTCCCGCCACGAAACCCTTTATCACAGATATATA
CATACCCCTGAGGGCATAACAAGGTCGCCCATGCAAAGAGACACCGCATC
GTACGCCCGGGGGTTTTGGAACCGAAGACAACGTATAAGAAAAGAAGGGC
CTACACCTGTTGCAACACCACGACCAGACGACACAGACCCAAACGACCAT
GTTGTTTCCCCGACCGTTGTTCTTCTCATTAGGGCGGAAGTTAAGGAGAA
CTCCAAGAGGTATCGGGAGACGTCGGAACGAGCGGCACAGGAGGCGAAAC
TTCGAGCGAAGGAGCGGGTTGAGGTAACGATAGGATATCCTGGCTGTGCC
ACCAGCCCATGCGGGTAGCCTCACCATCCAAACCTATTGTGCCTTTAACT
TTGTGGGTATGGCAGGCTATTGGAGAATGTTTACTCGAGCGCTATAGTAC
AACAAGACCAGATATTCTTTTGAAGCACTTCTGGGCGGACAACAAGGGAC
GTAACAACACATGGTATCCACTAGTCGAGCAAGTCGGGGGACCGACGGTC
GTACCCTCTCCGTGCCGAACTTAGTTTCGCCAGCTTGACTCCTGCTGTCT
CTACCCCCACGCCGCTCCACCAATCAATTTCATCGGCAACTAGTCGGTAC
GGAATCTGAACGCTGTTCTTGAAAGGCCTCTCTTGCGTCCGCATCTCAAT
GGACCACCGATAAAACGTGTCGCCCGCATATGGCCAAAAAGGCGGCGATC
TCCCGCACGAAGGAAGCCTGCGAAGAAGCCAACGCCAAGGCGAAGGAAAA
ATCGGACGAAAAGTGGCGGGGTGTGCTGCGCGAGGAGCTAAGAAAGGCAG
AGGGCGAGGCGGCGGCGGTGGCGACTGCAGCCAGCAGGGATCACGACGCG
CTCCTGGAGGAAACCCAACAGGCGTTCCGCATGTGAGCG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10937:56..1794+

>mRNA_E-fasciculatus_F_contig10937.750.1 ID=mRNA_E-fasciculatus_F_contig10937.750.1|Name=mRNA_E-fasciculatus_F_contig10937.750.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=924bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10937:56..1794+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGTGGCGGCCGAGAGTGACGTTAGAGAACGCACCCGAAGAGCTCTCAG
GGAGGCCGGGGAGGGAGCGCGTAGGGCGCAGAAGGCGGCGGTCGAGATGG
TGGCGGCCGAGAGTGACGTTAGAGAACGCACCCGAAGAGCTCTCAGGGAG
GCCGGGGAGGGAGCGCGTAGGGCGCAGAAGGCGGCGGTCGAGGATGCTCA
AAGAGCGGTGATGGTGAAGGCTGAAGACGAACTCGCGGAGGCCGAGCGAG
GCTTCGCCGAGGAGCGAGACAGGCTGCTGGAGGAAGCCGAAGCCGCGGCG
GCGGTTTCCGCGACCCAGGTGCAGACCATCGAAGAGCTGAGGGCGCTCGA
GACAGGAACGAGACGCGAGCTGGAGAAAGCCAGGATGCTCAAAGAGCGGT
GATGGTGAAGGCTGAAGACGAACTCGCGGAGGCCGAGCGAGGCTTCGCCG
AGGAGCGAGACAGGCTGCTGGAGGAAGCCGAAGCCGCGGCGGCGGTTTCC
GCGACCCAGGTGCAGACCATCGAAGAGCTGAGGGCGCTCGAGACAGGAAC
GAGACGCGAGCTGGAGAAAGCCAGAACTCCAAGAGGTATCGGGAGACGTC
GGAACGAGCGGCACAGGAGGCGAAACTTCGAGCGAAGGAGCGGGTTGAGA
ACTCCAAGAGGTATCGGGAGACGTCGGAACGAGCGGCACAGGAGGCGAAA
CTTCGAGCGAAGGAGCGGGTTGAGGCGGCGATCTCCCGCACGAAGGAAGC
CTGCGAAGAAGCCAACGCCAAGGCGAAGGAAAAATCGGACGAAAAGTGGC
GGGGTGTGCTGCGCGAGGAGCTAAGCGGCGATCTCCCGCACGAAGGAAGC
CTGCGAAGAAGCCAACGCCAAGGCGAAGGAAAAATCGGACGAAAAGTGGC
GGGGTGTGCTGCGCGAGGAGCTAA
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