mRNA_E-fasciculatus_F_contig10933.749.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig10933.749.1
Unique NamemRNA_E-fasciculatus_F_contig10933.749.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10933.749.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10933contigE-fasciculatus_F_contig10933:2701..3458 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size758
Cds size414
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10933.749.1prot_E-fasciculatus_F_contig10933.749.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig10933 2839..3252 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927594.0161371-UTR-E-fasciculatus_F_contig10933:2700..28381622927594.0161371-UTR-E-fasciculatus_F_contig10933:2700..2838Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10933 2701..2838 +
1695995611.7003984-UTR-E-fasciculatus_F_contig10933:2700..28381695995611.7003984-UTR-E-fasciculatus_F_contig10933:2700..2838Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10933 2701..2838 +
1622927594.0540307-UTR-E-fasciculatus_F_contig10933:3252..34581622927594.0540307-UTR-E-fasciculatus_F_contig10933:3252..3458Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10933 3253..3458 +
1695995611.7242892-UTR-E-fasciculatus_F_contig10933:3252..34581695995611.7242892-UTR-E-fasciculatus_F_contig10933:3252..3458Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10933 3253..3458 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927594.0364225-CDS-E-fasciculatus_F_contig10933:2838..32521622927594.0364225-CDS-E-fasciculatus_F_contig10933:2838..3252Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10933 2839..3252 +
1695995611.7107825-CDS-E-fasciculatus_F_contig10933:2838..32521695995611.7107825-CDS-E-fasciculatus_F_contig10933:2838..3252Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10933 2839..3252 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig10933.749.1

>prot_E-fasciculatus_F_contig10933.749.1 ID=prot_E-fasciculatus_F_contig10933.749.1|Name=mRNA_E-fasciculatus_F_contig10933.749.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=138bp
MYGSVSAYASLCNMWCCLFVGETRKEKEEAPRAETVAPIAIFHSRRSNLS
CLYAKKENSQRQKLERQTCTPRLIVVKVAAVGRGRLVGVLVYNPSEPRET
FAAARVPMARGAAIYLIGNDPLFEDPLECTSPIKRLW*
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mRNA from alignment at E-fasciculatus_F_contig10933:2701..3458+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig10933.749.1 ID=mRNA_E-fasciculatus_F_contig10933.749.1|Name=mRNA_E-fasciculatus_F_contig10933.749.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=758bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10933:2701..3458+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TACACCGTAACAAGAATACAGACGACGAGCCATCAGCACGGACGGGTGTG
ATTGTACGCACACACAAGGGAGAGACGAGGGTGAAACAAAAGCATGTAAA
TTGCTGTGGGTGTGCGTGCGCACGTTGTATACACGCACATGTATGGGAGT
GTGTCTGCGTATGCATCTCTGTGTAATATGTGGTGTTGTTTATTTGTTGG
GGAGACAAGAAAAGAAAAAGAAGAAGCACCGAGGGCGGAAACAGTGGCCC
CAATTGCCATTTTTCACTCTCGAAGAAGCAACTTGTCATGCCTATATGCA
AAAAAAGAAAACTCACAACGCCAAAAACTAGAGCGGCAAACATGCACACC
ACGATTGATTGTCGTTAAAGTTGCAGCAGTGGGAAGAGGCCGGCTTGTTG
GAGTGCTGGTGTACAATCCCTCCGAACCAAGAGAAACGTTCGCAGCAGCG
CGAGTCCCGATGGCAAGGGGGGCCGCCATATACTTGATCGGTAACGACCC
ACTCTTCGAAGACCCTCTCGAATGCACGTCGCCGATTAAAAGGTTGTGGT
AACCTCTCTACGCACACCGTTCGAAAGCAAACATCATGCTACCGCCGTCG
CCGCCGCGCCGGAGGGGCGGCGCGTCGCCTCGAGTGCTGCGTGTACTGCT
GCTGCTGCTGCTGCTGCTGCTGTGTGACCACCACCACCACTTCCACACAA
AAACCTCTCACCACGCAGGCGCCGTCCCACTCCAAACATTGTGTACACAT
GCCTGTGT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10933:2701..3458+

>mRNA_E-fasciculatus_F_contig10933.749.1 ID=mRNA_E-fasciculatus_F_contig10933.749.1|Name=mRNA_E-fasciculatus_F_contig10933.749.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=828bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10933:2701..3458+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTATGGGAGTGTGTCTGCGTATGCATCTCTGTGTAATATGTGGTGTTG
TTTATTTGTTGGGGAGACAAGAAAAGAAAAAGAAGAAGCACCGAGGGCGG
AAACAGTGGCCCCAATTGCCATTTTTCACTCTCGAAGAAGCAACTTGTCA
TGCCTATATGCAAAAAAAGAAAACTCACAACGCCAAAAACTAGAGCGGCA
AACATGCACACCACGATTGATTGTCGTTAAAGTTGCAGCAGTGGGAAGAG
GCCGGCTTGTTGGAGTGCTGGTGTACAATCCCTCCGAACCAAGAGAAACG
TTCGCAGCAGCGCGAGTCCCGATGGCAAGGGGGGCCGCCATATACTTGAT
CGGTAACGACCCACTCTTCGAAGACCCTCTCGAATGCACGTCGCCGATTA
AAAGGTTGTGGTAAATGTATGGGAGTGTGTCTGCGTATGCATCTCTGTGT
AATATGTGGTGTTGTTTATTTGTTGGGGAGACAAGAAAAGAAAAAGAAGA
AGCACCGAGGGCGGAAACAGTGGCCCCAATTGCCATTTTTCACTCTCGAA
GAAGCAACTTGTCATGCCTATATGCAAAAAAAGAAAACTCACAACGCCAA
AAACTAGAGCGGCAAACATGCACACCACGATTGATTGTCGTTAAAGTTGC
AGCAGTGGGAAGAGGCCGGCTTGTTGGAGTGCTGGTGTACAATCCCTCCG
AACCAAGAGAAACGTTCGCAGCAGCGCGAGTCCCGATGGCAAGGGGGGCC
GCCATATACTTGATCGGTAACGACCCACTCTTCGAAGACCCTCTCGAATG
CACGTCGCCGATTAAAAGGTTGTGGTAA
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