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Homology
BLAST of mRNA_E-fasciculatus_F_contig10931.748.1 vs. uniprot
Match: D8LSM0_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSM0_ECTSI) HSP 1 Score: 478 bits (1230), Expect = 7.500e-152 Identity = 240/257 (93.39%), Postives = 249/257 (96.89%), Query Frame = 1
Query: 22 DDEEEGEGXEGG-NGFFSKEVDAGSDPIAAVVYSVTPPTNAERQGWEHGHDEVDGRNKLPIGQRRVCLVMSRRSAESHLKVLKMGGAKDKRSWADVKGKVSSEDVPGVGDVETVDVPLTKANMKLFRVLLEERAGCAYAVTDAPMVQLEMSGEREATKEVLQQVFGVTSPFEGGRVGAPNQVIEFPRGNNNVEGCNSLVEDVPLGARMLAAMANANRAGGRKLRVWNDPIKRKEKLEVSLSLKQSVWFTKEGIVPSS 789
++E EGEG +GG NGFFSKEVDAGSDPIAAVVYSVTPPTNAERQGWEH H+EVDGRN+LPIGQRRVCLVMSRRSAESHLK+LKMGGAKD+RSWADVKGK+SSEDVPGVG VETVDVPLTK NMKLFRVLLEERAGCAYAVTDAPMVQLEMSGEREATKE L QVFGVTSPFEGGRVGAPNQVIEFPRGNNNVEGCNSLVEDVPLGARMLAAMANANRAGGRKLRVWNDPIKRKEKLEVSLSLKQSVWFTKEGI+PSS
Sbjct: 1478 EEEAEGEGGDGGSNGFFSKEVDAGSDPIAAVVYSVTPPTNAERQGWEHAHNEVDGRNRLPIGQRRVCLVMSRRSAESHLKILKMGGAKDRRSWADVKGKISSEDVPGVGHVETVDVPLTKTNMKLFRVLLEERAGCAYAVTDAPMVQLEMSGEREATKEALHQVFGVTSPFEGGRVGAPNQVIEFPRGNNNVEGCNSLVEDVPLGARMLAAMANANRAGGRKLRVWNDPIKRKEKLEVSLSLKQSVWFTKEGILPSS 1734
BLAST of mRNA_E-fasciculatus_F_contig10931.748.1 vs. uniprot
Match: A0A6H5KLS0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLS0_9PHAE) HSP 1 Score: 271 bits (692), Expect = 2.650e-87 Identity = 144/164 (87.80%), Postives = 148/164 (90.24%), Query Frame = 1
Query: 1 MGGGYTDDDEEEGEGXEGG-NGFFSKEVDAGSDPIAAVVYSVTPPTNAERQGWEHGHDEVDGRNKLPIGQRRVCLVMSRRSAESHLKVLKMGGAKDKRSWADVKGKVSSEDVPGVGDVETVDVPLTKANMKLFRVLLEERAGCAYAVTDAPMVQLEMSGEREAT 489
MGGGYTD XEGG NGFFSKEVDA SDPIAAVVYSVTPPTNAERQGWEH H+EV GR LPIGQRRVCLVMSRRSAESHLK+LKMGGAKDKRSWADVKGK+SSE VPGVGDVETVDVPLTKANMKLFRVLLEERAGCAYAVTDAPMVQLEMSGER+ T
Sbjct: 121 MGGGYTDXXXXXX--XEGGSNGFFSKEVDADSDPIAAVVYSVTPPTNAERQGWEHAHNEVGGR--LPIGQRRVCLVMSRRSAESHLKILKMGGAKDKRSWADVKGKISSEGVPGVGDVETVDVPLTKANMKLFRVLLEERAGCAYAVTDAPMVQLEMSGERQVT 280
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 476.9 |
| Seed ortholog evalue | 6.5e-132 |
| Seed eggNOG ortholog | 2880.D8LSM0 |
| Preferred name | YTHDC2 |
| KEGG ko | ko:K14442,ko:K20099 |
| KEGG Pathway | ko03018,map03018 |
| EggNOG free text desc. | positive regulation of polysome binding |
| EggNOG OGs | COG1643@1,KOG0921@2759 |
| EC | 3.6.4.13 |
| COG Functional cat. | L |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko01000,ko03019,ko03041 |
| Hectar predicted targeting category | other localisation |
| Exons | 6 |
| Model size | 824 |
| Cds size | 822 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig10931.748.1 >prot_E-fasciculatus_F_contig10931.748.1 ID=prot_E-fasciculatus_F_contig10931.748.1|Name=mRNA_E-fasciculatus_F_contig10931.748.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=274bp
MGGGYTDDDEEEGEGGEGGNGFFSKEVDAGSDPIAAVVYSVTPPTNAERQ GWEHGHDEVDGRNKLPIGQRRVCLVMSRRSAESHLKVLKMGGAKDKRSWA DVKGKVSSEDVPGVGDVETVDVPLTKANMKLFRVLLEERAGCAYAVTDAP MVQLEMSGEREATKEVLQQVFGVTSPFEGGRVGAPNQVIEFPRGNNNVEG CNSLVEDVPLGARMLAAMANANRAGGRKLRVWNDPIKRKEKLEVSLSLKQ SVWFTKEGIVPSSSSSSSSSSSAS back to topmRNA from alignment at E-fasciculatus_F_contig10931:46..4052+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig10931.748.1 ID=mRNA_E-fasciculatus_F_contig10931.748.1|Name=mRNA_E-fasciculatus_F_contig10931.748.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=4007bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10931:46..4052+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female) ATGGGCGGGGGTTACACGGACGACGACGAGGAGGAAGGGGAGGGTGGGGA
GGGGGGAAACGGGTTCTTCAGCAAGGAGGTCGACGCCGGCTCGGACCCGA
TCGCGGCGGTGGTGTACTCGGTCACGCCGCCCACCAACGCGGAGCGGCAG
GGCTGGGAGCATGGCCACGACGAAGTGGATGGGAGGTGTGTGTCGTGTGT
TTTCCTTACGGTCGCGATGTTGTTCGTGTTTTGAAAAGTGGTGGTTCCGC
AAGCGCAGAGGCTGCCTGCGGGCCCCAAGGCAGCGCGTCTCTACCAGACT
GTGTGCATGTATGTTCCGTATGCATGTGTTTTGCATATATGTATGCGTGC
GTGCATGCATGCACCGTATATTCGGCATGCATCTATGTATGATGGAGGTT
GTTTCTTCAAGCGAACGTATGCGTTTCTTATGCGCGTCTCACGTCTTCAT
TTACCCCAGAGAGTTTTTCCCTCAGGGGCGGACCCGTCGATGGTGCGACA
CACCTCCTACGTGCTAAATGCACATGTAACCTGCGCCATGTTTTCCCCGC
GGCCCTCGCGGGAGCCCGGGAGAGGCCGGCTTGAGCGCGCCGCAGGGTCG
GTTTCTAGGTAGGCGGCGTGCCGTCCGCTCTTGGTATTACTCGGAGCAGG
CTAATTGATGTCTGTACTCTCCAACTCCCCCCGGCCTACATGTCTTGCTT
CTTTTTTTTTGGTCGAGGCGCGTTGGCTCAAATCCTCGCCGTGCTGCCTC
ACTGATCATGGCTCTGACCACCTCTTCGCTTCCGTATCTCTTTTTTTTTT
TTGGCGTGGCTTGGGGTGTTTGCTGGCGCAGAAATAAGCTGCCGATAGGA
CAGCGGCGGGTGTGCCTGGTGATGTCTCGGAGGTCGGCCGAGTCTCACCT
GAAGGTCCTGAAGATGGGCGGCGCGAAGGACAAACGGTCGTGGGCAGACG
TCAAGGGCAAGGTGCGCGACGAGAAGAGGGCGGGGAGGCAGCCATCTCGT
TGCTGTTGCTGTTGTTGCTGTTGTTCGTGGTGTGTCATGAAATCCGATAG
TTGCGGCCGCCTCCGCCAGAACCGACCGCCCAATGCCAGCACGAGGTTGG
AACAAGTATGGTGGCCCCTGCCTCTCTCGACTGGAAACCCAATCCTCCTT
TTCCATGCGTGTTTGCGGCGCGCGAAGCAAGGAAAACACGAAATATAACA
GCACGGAACTGAATGATGAGGAAGGGCGAAAATCGTTTATGCAACCAAAC
CCTACCCCCCAACCCAGGCACAATCAAAACACTAACGCTGACGCTCTGCT
CATTGACCAGCCGGTTAGCGCAATCGATGCCAACACTATCAGACACACGG
AAGAAACACACGGATTCATACGCCGCCTTCCTCGTGCATCATGTGTACGA
CTCGCGAATGAATTGGCTGAGAATGCGACACTCGACGACGTACAACACCA
ATACTAACGCCGCCTCCATCGTGTATCGTACGTACGAATAGCGAATGAAA
TATCAGAGAATGCGACACACGACGGCATGTAACACACCGCCGCCGCCGCC
GCTCCACAGGTTTCCAGCGAGGACGTGCCAGGCGTTGGCGATGTAGAGAC
GGTAGACGTGCCGCTGACGAAGGCCAACATGAAGCTGTTCCGAGTGCTGC
TGGAGGAGAGGGCCGGCTGCGCCTACGCCGTGACGGACGCGCCCATGGTG
CAGCTCGAGATGTCCGGAGAGAGGCGAGTGATGGTTGGGTTGGTATGTCG
TTTGCGAATGGCTAGCTTGCGCTCTATACTAAGCGAACGAGTGAGTGAAT
GTGCGAGCGGGCGACAGAAGTGACGCGGGGGTGAGTTGGTGACTGAGTGA
GTTAATGGGTGGGCGGGTGATTGGACTGGTGAGTTTGTGGGCGAGATTGG
TGTGTGTTAAGTGGGTTGGTTGAGTGACTTGCGTGGATGAATGAGGAATG
AGGTGGTGAATTAGTGAAAGAGTTAACTGATAAGTGAAGTTGTGAGTATG
CGAGCGATTGAGTTTGTGGGTAAGGGTAGTGAATGGGTTGGGTGGGCGAG
CGAAACGAGTGGATGGATGAGTGAACTTCAGAGTGATATTAGTGGTTGGG
TAGGTAGAGTGAATGACACTGGTGGGTGCGCGAAGGAGTGAATGGATGAG
TGAAGTTCAGGGTGAGAGATTTATTGGTTAGGTGGGCAAAGTGAATGACA
CTGGTGGGGGCGCGAAGGAGTGAATGGATGAGTGAAGTTCAGGGTGAGAG
ATTGTATCGGTTAGGTGGGCAAAGTGAATGACTTTGATGGGGTGAGCGAA
GAAGTGAATGGATGAGCGAAGTTCAGAGTGGTTAGGTTGGCGGGTGGTTG
GGTGGGTGGTTGGGTGGGTAGGTGAAATGAGAGAGTTGAGTGGGTGGGTG
CTGATATTCTTGGTTGCTCCCTTACTGTGTGGGTCTCCCAGGAACGGTCG
TGTCCGGGGGGTGGTCGGGCGGAAGGTGGATGGATGGATGGATACTCTAT
GCTGTTGATTTTCGCTCTATTTTTGTCGCTGTTGTTTTCAAGCGCGGCGT
TTCGGCGGACCGACGCGCACAAGACCTCGCGGCCGCCTTACTCTGCCCGT
GCATTCATCCAATAGATTGATCTTGTTTCCCTCTCTCTCTCGGTGTGTCG
TTTTCTGCCGCCACACAGAGAGGCGACGAAGGAGGTGCTCCAGCAGGTGT
TTGGCGTGACCTCGCCGTTCGAAGGCGGCCGTGTCGGCGCCCCGAACCAG
GTGCTTGCTCAGTTTGGGCGGTTTTCGTGTGTTTGTGGGGGCTTTTTGGT
CATCCGGGAGGTGCCGTTGCCGCTGCCGTGCTGTTGATGCTGCCGTGCTG
TTGATGCTGCTGCTGCGGTGCTGTTGCTGCTGCGGTGCTGTTGCTGCTGC
GGTGCTGTTGGTTCTGCTGCGCTGCTGTACTACTGCGGTTGCTGCTGCCG
TGCTGTTGCTGCTGCTGTCTTGTTGCACCTGTTGCGCCCTCTGCGCCTGC
TGGTGGTGCATGCCTACGCGCACACTGGGCAGTCTGCATGCACGCTCACA
CATGGTATGATACACGTCGGCGGTTTACACGGAAGCGATTCTGGCAAGCA
CTCAACATCCCCCTCCCCCTCTCCCGTCCACCCCGTCGAAGGTGATTGAG
TTCCCGAGGGGCAACAACAACGTGGAAGGGTGCAACTCGCTCGTCGAGGA
CGTGCCGCTGGGGGCCAGGATGCTGGCGGCCATGGCCAACGCCAACAGGG
CAGGCGGGCGGTGAGTCTCAGCCGCGGGGCGTCTACGCACCTCACGGCGC
ATGAGGCGTGAACGCGCCAACTCCTGTGGCCTCTTTTTTTCGAAGCTCGA
TACCCTCCTACTACCTTTTTTTGGCTCTTTCTTTTCTGTTGCCAACTGTT
GGGGTATAGACCGTGCGGGGAGGTTTGTGAAGGAGTGGGACACGCTCCGC
ACACAAGTCAGTCCACGACAAATTGAGCGCTACAAATAAAGGCGGTGTAT
CTCGGGCGAGTTGGGCTGCGGTGTCCTCGTGCCACCACTGTCAAACCCTC
GTCGTAACTCATACCCGAAGGCTTGTGGTCTTCGGCGCTGCGCTGTATTC
ATCTGGCGCTGCGCTTTTTGTTGAGCTGCTATGAGAACCTTCTCCATATC
TCTTTCTCCGAGGCTCTCGTGCTACCCCATGGGAAAAGCCTTGGAACTGT
GTGCATCGGTTGTATCATCACCATCGATCTCGACCACCGCTACCGCTACC
ACAACACCACGTCGCCAACGGTAAGACGAGAAGCACGTCACTAGTATTCC
CCTCTCCCTCCGCCCCCGCTTGCTTCGAACGTTGCCTGCGCGCCAATTTG
TGGTGATGCTAACAGGAAGCTGCGTGTCTGGAACGACCCCATCAAGCGCA
AGGAGAAGCTGGAGGTCTCCCTGTCCCTCAAGCAGTCGGTGTGGTTCACC
AAAGAAGGTATCGTACCCTCCTCCTCCTCCTCCTCCTCGTCCTCCTCTTC
AGCGTCT back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig10931:46..4052+ >mRNA_E-fasciculatus_F_contig10931.748.1 ID=mRNA_E-fasciculatus_F_contig10931.748.1|Name=mRNA_E-fasciculatus_F_contig10931.748.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1644bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10931:46..4052+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female) ATGGGCGGGGGTTACACGGACGACGACGAGGAGGAAGGGGAGGGTGGGGA GGGGGGAAACGGGTTCTTCAGCAAGGAGGTCGACGCCGGCTCGGACCCGA TCGCGGCGGTGGTGTACTCGGTCACGCCGCCCACCAACGCGGAGCGGCAG GGCTGGGAGCATGGCCACGACGAAGTGGATGGGAGATGGGCGGGGGTTAC ACGGACGACGACGAGGAGGAAGGGGAGGGTGGGGAGGGGGGAAACGGGTT CTTCAGCAAGGAGGTCGACGCCGGCTCGGACCCGATCGCGGCGGTGGTGT ACTCGGTCACGCCGCCCACCAACGCGGAGCGGCAGGGCTGGGAGCATGGC CACGACGAAGTGGATGGGAGAAATAAGCTGCCGATAGGACAGCGGCGGGT GTGCCTGGTGATGTCTCGGAGGTCGGCCGAGTCTCACCTGAAGGTCCTGA AGATGGGCGGCGCGAAGGACAAACGGTCGTGGGCAGACGTCAAGGGCAAG AAATAAGCTGCCGATAGGACAGCGGCGGGTGTGCCTGGTGATGTCTCGGA GGTCGGCCGAGTCTCACCTGAAGGTCCTGAAGATGGGCGGCGCGAAGGAC AAACGGTCGTGGGCAGACGTCAAGGGCAAGGTTTCCAGCGAGGACGTGCC AGGCGTTGGCGATGTAGAGACGGTAGACGTGCCGCTGACGAAGGCCAACA TGAAGCTGTTCCGAGTGCTGCTGGAGGAGAGGGCCGGCTGCGCCTACGCC GTGACGGACGCGCCCATGGTGCAGCTCGAGATGTCCGGAGAGAGGTTTCC AGCGAGGACGTGCCAGGCGTTGGCGATGTAGAGACGGTAGACGTGCCGCT GACGAAGGCCAACATGAAGCTGTTCCGAGTGCTGCTGGAGGAGAGGGCCG GCTGCGCCTACGCCGTGACGGACGCGCCCATGGTGCAGCTCGAGATGTCC GGAGAGAGAGAGGCGACGAAGGAGGTGCTCCAGCAGGTGTTTGGCGTGAC CTCGCCGTTCGAAGGCGGCCGTGTCGGCGCCCCGAACCAGAGAGGCGACG AAGGAGGTGCTCCAGCAGGTGTTTGGCGTGACCTCGCCGTTCGAAGGCGG CCGTGTCGGCGCCCCGAACCAGGTGATTGAGTTCCCGAGGGGCAACAACA ACGTGGAAGGGTGCAACTCGCTCGTCGAGGACGTGCCGCTGGGGGCCAGG ATGCTGGCGGCCATGGCCAACGCCAACAGGGCAGGCGGGCGGTGATTGAG TTCCCGAGGGGCAACAACAACGTGGAAGGGTGCAACTCGCTCGTCGAGGA CGTGCCGCTGGGGGCCAGGATGCTGGCGGCCATGGCCAACGCCAACAGGG CAGGCGGGCGGAAGCTGCGTGTCTGGAACGACCCCATCAAGCGCAAGGAG AAGCTGGAGGTCTCCCTGTCCCTCAAGCAGTCGGTGTGGTTCACCAAAGA AGGTATCGTACCCTCCTCCTCCTCCTCCTCCTCGTCCTCCTCTTCAGCGT CTGAAGCTGCGTGTCTGGAACGACCCCATCAAGCGCAAGGAGAAGCTGGA GGTCTCCCTGTCCCTCAAGCAGTCGGTGTGGTTCACCAAAGAAGGTATCG TACCCTCCTCCTCCTCCTCCTCCTCGTCCTCCTCTTCAGCGTCT back to top
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