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Homology
BLAST of mRNA_E-fasciculatus_F_contig10930.747.1 vs. uniprot
Match: A0A6H5K704_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K704_9PHAE) HSP 1 Score: 439 bits (1128), Expect = 1.880e-148 Identity = 259/316 (81.96%), Postives = 275/316 (87.03%), Query Frame = 1
Query: 1 ETCTSVTVTGGDFPGVYELGEDSS--YVGADDSTHVLQPVVFAETRVRRNLVGGAGDGXXXXXXXXXRRGLANDCASQMWILADTGAVEEEGFPYYSTFDCATHPASVESTWLYVDCDECAEVATISVVCTSSLEDAEDVLTSGDGGDGGVSLPVIIGIVAGGLVLLLCLGFCIVHRKKRAHKGSHTFADDSQHSLAQQKRAGKAGAXXXXXXXXXXXXXXXXXXXNGAVPLPAYTGAVGETVESPMAAG-TVVDS-DRGVGGDGRGNVRGGSGGSGRSGAGVLAKGANAKSFKPNHGGANTPAYEGIFAPRGGGG 936
ETCTSVTVTGGD PGVYELGE SS YVG DDSTHVLQPVVFAE+R RRNLVGG GDGXXXXXXXXXRRGLANDCA+QMWILADTGAVEEEGFPYYSTFDCATHPASVESTWLYVDCD+CAEVATISVVCTS +VLTS DGGDG +++P II I GGL+++LC+GFC+ H KKRAHKGSHTFADDSQHSLAQQKRAGKAGA XXXXXXXXXXXX AVPLPAYTGA+GETVESPMAAG T+ DS DRGVGGDG NVRGG G SG S AG+LAKG+NAKSFKPNHGG NTPAYEGIFAPRGG G
Sbjct: 30 ETCTSVTVTGGDLPGVYELGESSSEVYVGTDDSTHVLQPVVFAESRARRNLVGGTGDGXXXXXXXXXRRGLANDCATQMWILADTGAVEEEGFPYYSTFDCATHPASVESTWLYVDCDDCAEVATISVVCTSP-----EVLTSDDGGDGDLTIPAIIAIAVGGLIVVLCVGFCVFHCKKRAHKGSHTFADDSQHSLAQQKRAGKAGAGGAAVADXXXXXXXXXXXXX-AVPLPAYTGAIGETVESPMAAGGTMGDSGDRGVGGDGPRNVRGGIGVSGGSSAGLLAKGSNAKSFKPNHGGVNTPAYEGIFAPRGGAG 339
BLAST of mRNA_E-fasciculatus_F_contig10930.747.1 vs. uniprot
Match: D8LHN9_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHN9_ECTSI) HSP 1 Score: 419 bits (1076), Expect = 1.110e-143 Identity = 247/313 (78.91%), Postives = 258/313 (82.43%), Query Frame = 1
Query: 1 ETCTSVTVTGGDFPGVYELGEDSSYVGADDSTHVLQPVVFAETRVRRNLVGGAGDGXXXXXXXXXRRGLANDCASQMWILADTGAVEEEGFPYYSTFDCATHPASVESTWLYVDCDECAEVATISVVCTSSLEDAEDVLTSGDGGDGGVSLPVIIGIVAGGLVLLLCLGFCIVHRKKRAHKGSHTFADDSQHSLAQQKRAGKAGAXXXXXXXXXXXXXXXXXXXNGAVPLPAYTGAVGETVESPMAAGTVV--DSDRGVGGDGRGNVRGGSGGSGRSGAGVLAKGANAKSFKPNHGGANTPAYEGIFAPRGGG 933
ETCTSVTVTGGDFPG YELGE YVG DDST VLQPVVFAE+R RR+LVG XXXXXXXXX RGLANDCASQMWILADTGAVEE GFPYYSTFDCATHPASVESTWLYVDCD+CA +LTSGDGGD G++LPVII IVAGGL+LLLCLGFC+VHRKKRAHKGSHTFADDSQHSLAQQKRAGKAGA XXXXXXXXXXXX NGAVPLPAYTGAVGETVESPMAAG + DRGVGGDGRGNVRG SGAG+LAKG+NAKSFKPNHGGANTP YEGIFAPRGGG
Sbjct: 36 ETCTSVTVTGGDFPGDYELGEGDVYVGTDDSTRVLQPVVFAESRARRSLVGXXXXXXXXXXXXXXXRGLANDCASQMWILADTGAVEEAGFPYYSTFDCATHPASVESTWLYVDCDDCAXXXXXXXXXXXXXXXXXXLLTSGDGGDSGLTLPVIIAIVAGGLILLLCLGFCVVHRKKRAHKGSHTFADDSQHSLAQQKRAGKAGAGGAAVAXXXXXXXXXXXX-NGAVPLPAYTGAVGETVESPMAAGGTMGESGDRGVGGDGRGNVRGXXXXXXXSGAGLLAKGSNAKSFKPNHGGANTPGYEGIFAPRGGG 347
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-26_003820.1 |
| Exons | 4 |
| Model size | 991 |
| Cds size | 990 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig10930.747.1 >prot_E-fasciculatus_F_contig10930.747.1 ID=prot_E-fasciculatus_F_contig10930.747.1|Name=mRNA_E-fasciculatus_F_contig10930.747.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=330bp
ETCTSVTVTGGDFPGVYELGEDSSYVGADDSTHVLQPVVFAETRVRRNLV
GGAGDGGGAGGGGGRRRGLANDCASQMWILADTGAVEEEGFPYYSTFDCA
THPASVESTWLYVDCDECAEVATISVVCTSSLEDAEDVLTSGDGGDGGVS
LPVIIGIVAGGLVLLLCLGFCIVHRKKRAHKGSHTFADDSQHSLAQQKRA
GKAGAGGAAVAGGGGAGDGGGGGGNGAVPLPAYTGAVGETVESPMAAGTV
VDSDRGVGGDGRGNVRGGSGGSGRSGAGVLAKGANAKSFKPNHGGANTPA
YEGIFAPRGGGGAGGAGGAAGAGGSQGTAA back to topmRNA from alignment at E-fasciculatus_F_contig10930:603..3750- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig10930.747.1 ID=mRNA_E-fasciculatus_F_contig10930.747.1|Name=mRNA_E-fasciculatus_F_contig10930.747.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3148bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10930:603..3750- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GAGACGTGCACCAGCGTTACGGTAACCGGTGGCGACTTCCCCGGCGTGTA
CGAGCTAGGGGAGGACTCTTCTTACGTCGGGGCGGACGATTCGACGCATG
TCCTGCAGCCGGTTGTATTCGGTGAGCGTTCTTCTTTCTGCATGCAGGAA
CACACCGGTATGTTGCGATATGTACGTTGCAGAGAGCAAAGACTACCCGC
CGTTCGAGGGAATGCACCAATCGACGGATACAAGGAGCATTTATGATTCA
CAGCAGGGCATTTTCGGAGGGAACTACATGTACAGAGATATGGAATTGCT
GTATTGTATGCTGTATGCTGTTTGCTGCTTGGGGAATCGAAACTAAACTG
TGGCAAGTTAGTGCTCCGCTATCAATTGTTTGCTAGTGTTCCTTCCTAAC
CTCGTCTATGGAGGGGAGATGGGTCACTGCTGTAGATGTAGATATTACTT
CTAGTATATAGGTAGAATACGGACTTCCCCTCCTTCAAAGCCGAGCGAAA
CGCCTGGTGACCTTGTTTGTCCCGTGTCCCGTGTACCCGTGTCCCGTGTA
CCCGTGTCCCGTGTACCCGTGTCCCGTGTACCCGTGTCCCGTGTACCCGT
GTCCCGTAATTTGACGTCCCCGGAACACATTGTTGTTGTTGTTGATGTCT
TCACATTAAAAACCATCCCGGTCTCGCTATCCAGTACCTCCTTCTGTCTC
AATCTCTCCGTACTCACCCAGCACTTTACTCGGTCAATTTCCGGTGTCAC
AGGCTAACGTACACCTAGAAAAGGTATACCAAATAAAATGGACCCCAATG
CTCACCTTATTATTTGCAACAATACCTATGCATATGCAACTGCTGCCGTT
ATAGCAGAACTGCCTGTCTAACTCGCTCATCACCCGCCTCTCTCTCTTTC
TCTTCAATTGTCTGTCTGTCTGTTTTTTTTTTTTTTCTATCTTCGTCTCT
TGCAGCGGAGACCAGGGTACGAAGGAACCTGGTGGGCGGTGCGGGAGATG
GGGGCGGCGCCGGCGGTGGCGGCGGCAGGAGAAGGGGCCTCGCGAACGAT
TGCGCGTCTCAGATGTGGATCCTAGCAGACACTGGGGCGGTAGAGGAGGA
AGGTTTCCCTTACTGTGAGTTGGTCGCGTGGGGGTCTGTCGTTTTCGGGC
TCGTGCTCGTCTGCTTGTTGGCCGGAAGGAAGAGTTGCAAGCTGTGCACA
ACGTGGAGGTGGAGGATAACACCACGCTAGCTGCCTCGTGCCGTCTTCCC
GCTTTGATTTTGTTTTGTTTTGGCGAAGATGTATGGTACCTACGTTATGG
TAGGAGTGACCAATCTATAAAGAGAAGACGCACTCGAACACGGAGGCTAC
CTGGTTTGGTAGGTGGTAGGTGGTCTCTTGTGAACCGGTACGTAATGAGG
CGGGAGGAGAACCCCGGAACACGAAGGGTTTTTTACCATTCATTGTAAAG
ACTTCAACACATGCCCTTCGACTNNNNNNNNNNACGGGTAGTCTTTCGGT
GTTTGTACTTGTATTTTTTCTTTAAAAAATGGACGTTGTCCTCCGGGTTG
TTGGCCGACCTTCTTCCCTTCGGTCTCCATCGAATTGCAAGAAGAACCCA
GACTCTTGAGTTGTCGGTTACCCAGATGAACCATCTACGTGTGCCCTTGC
CCACGTCCTAGCGAGGCCTGTTGTTGGTGAAGAAGGAAAAAAGGAAGCTG
CGCCGGCTTTATTTTGCCGGAAATCAGTCGTCTCCCTGCCACCCCCGTAT
AGACCGCTTCCACGTCCGCTCTCTCACGCCCCTGCGCGTTCTATCGCTCC
CTTTTTCGCGCCGTCGCCTACATGACGTCAACAATCACATCATTGCTGGT
GCTTGCTGCGTGGGATGGTTTTATGGATGGGCCTTTGACTCGTCGACGGA
GAACAGATTCAACCTTCGACTGCGCGACGCATCCTGCAAGCGTGGAGAGG
TGAGCGAGCTAACATTTCTCGAGTTCCTTTTTGTGCGATGTGACGACACG
TCGTGCTACGGATGTGTGTATTCGCGCCAGCAGTAGGCCTGTTGTGCTGC
TTGTCGATGGCTGTGTTCTTAGGCCAGTTGTCTGGCCATACATGGTTCCC
CTCGCCGGCAGTCTGCAGGCGACCAACCCAGAGGGTATTCATGGGCATGG
TACAAGTATCGTTGGACTTCTGAGGAAGGCCTAACTTGGCTGTCTATATT
GCACGCAGAAACGGCGCCGATCGGAAAACACACCCGCGCCGCGTGCAAGT
AGGTATTGTCTTGTCTAAAAGGATTCCGCCTCGTTTCTGCGACTCTCACC
TAGCGGGCGCACGCCATGTCTTGACATATTTATTTTGTGTTCCTTTGAAA
CGGTTTGTCCTTGCTGCTCTTGTACAATCCGCACCATGACTTTTGCCGGC
GCCACCACCCCGACAACGGCTACTCCGTCCGCCCCCCCTCGCAAATGTCC
ACCTCCTCCCTCTCTCTCATGTGGTCTGTAGCACGTGGCTGTACGTGGAC
TGCGACGAATGCGCAGAGGTGGCGACGATATCCGTCGTGTGCACGTCCTC
GTTGGAGGACGCGGAGGACGTCCTGACCAGCGGCGACGGCGGCGACGGCG
GCGTGAGCCTGCCCGTGATAATCGGCATCGTCGCGGGAGGGCTGGTCCTC
CTGCTGTGCCTCGGGTTCTGCATCGTCCACCGCAAGAAACGGGCCCACAA
GGGGAGCCACACCTTCGCCGACGACTCGCAGCACAGCCTGGCCCAGCAGA
AGAGGGCCGGGAAAGCGGGGGCCGGCGGCGCCGCGGTCGCGGGCGGTGGC
GGCGCTGGTGATGGTGGTGGTGGCGGTGGCAACGGGGCGGTGCCCCTCCC
GGCGTACACCGGGGCAGTCGGCGAGACTGTCGAGAGCCCCATGGCGGCGG
GCACCGTGGTTGATAGCGATCGTGGCGTGGGCGGCGATGGGCGCGGAAAT
GTGCGGGGCGGGAGTGGCGGTAGCGGTCGCAGCGGCGCTGGTGTCCTCGC
GAAGGGCGCCAACGCCAAGAGCTTCAAGCCAAACCACGGCGGCGCGAACA
CTCCGGCGTACGAGGGCATATTCGCACCCCGCGGCGGGGGCGGCGCCGGC
GGCGCCGGAGGCGCCGCCGGCGCAGGCGGCAGCCAGGGCACTGCCGCC back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig10930:603..3750- >mRNA_E-fasciculatus_F_contig10930.747.1 ID=mRNA_E-fasciculatus_F_contig10930.747.1|Name=mRNA_E-fasciculatus_F_contig10930.747.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1980bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10930:603..3750- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GAGACGTGCACCAGCGTTACGGTAACCGGTGGCGACTTCCCCGGCGTGTA
CGAGCTAGGGGAGGACTCTTCTTACGTCGGGGCGGACGATTCGACGCATG
TCCTGCAGCCGGTTGTATTCGGAGACGTGCACCAGCGTTACGGTAACCGG
TGGCGACTTCCCCGGCGTGTACGAGCTAGGGGAGGACTCTTCTTACGTCG
GGGCGGACGATTCGACGCATGTCCTGCAGCCGGTTGTATTCGCGGAGACC
AGGGTACGAAGGAACCTGGTGGGCGGTGCGGGAGATGGGGGCGGCGCCGG
CGGTGGCGGCGGCAGGAGAAGGGGCCTCGCGAACGATTGCGCGTCTCAGA
TGTGGATCCTAGCAGACACTGGGGCGGTAGAGGAGGAAGGTTTCCCTTAC
TCGGAGACCAGGGTACGAAGGAACCTGGTGGGCGGTGCGGGAGATGGGGG
CGGCGCCGGCGGTGGCGGCGGCAGGAGAAGGGGCCTCGCGAACGATTGCG
CGTCTCAGATGTGGATCCTAGCAGACACTGGGGCGGTAGAGGAGGAAGGT
TTCCCTTACTATTCAACCTTCGACTGCGCGACGCATCCTGCAAGCGTGGA
GAGATTCAACCTTCGACTGCGCGACGCATCCTGCAAGCGTGGAGAGCACG
TGGCTGTACGTGGACTGCGACGAATGCGCAGAGGTGGCGACGATATCCGT
CGTGTGCACGTCCTCGTTGGAGGACGCGGAGGACGTCCTGACCAGCGGCG
ACGGCGGCGACGGCGGCGTGAGCCTGCCCGTGATAATCGGCATCGTCGCG
GGAGGGCTGGTCCTCCTGCTGTGCCTCGGGTTCTGCATCGTCCACCGCAA
GAAACGGGCCCACAAGGGGAGCCACACCTTCGCCGACGACTCGCAGCACA
GCCTGGCCCAGCAGAAGAGGGCCGGGAAAGCGGGGGCCGGCGGCGCCGCG
GTCGCGGGCGGTGGCGGCGCTGGTGATGGTGGTGGTGGCGGTGGCAACGG
GGCGGTGCCCCTCCCGGCGTACACCGGGGCAGTCGGCGAGACTGTCGAGA
GCCCCATGGCGGCGGGCACCGTGGTTGATAGCGATCGTGGCGTGGGCGGC
GATGGGCGCGGAAATGTGCGGGGCGGGAGTGGCGGTAGCGGTCGCAGCGG
CGCTGGTGTCCTCGCGAAGGGCGCCAACGCCAAGAGCTTCAAGCCAAACC
ACGGCGGCGCGAACACTCCGGCGTACGAGGGCATATTCGCACCCCGCGGC
GGGGGCGGCGCCGGCGGCGCCGGAGGCGCCGCCGGCGCAGGCGGCAGCCA
GGGCACTGCCGCCCACGTGGCTGTACGTGGACTGCGACGAATGCGCAGAG
GTGGCGACGATATCCGTCGTGTGCACGTCCTCGTTGGAGGACGCGGAGGA
CGTCCTGACCAGCGGCGACGGCGGCGACGGCGGCGTGAGCCTGCCCGTGA
TAATCGGCATCGTCGCGGGAGGGCTGGTCCTCCTGCTGTGCCTCGGGTTC
TGCATCGTCCACCGCAAGAAACGGGCCCACAAGGGGAGCCACACCTTCGC
CGACGACTCGCAGCACAGCCTGGCCCAGCAGAAGAGGGCCGGGAAAGCGG
GGGCCGGCGGCGCCGCGGTCGCGGGCGGTGGCGGCGCTGGTGATGGTGGT
GGTGGCGGTGGCAACGGGGCGGTGCCCCTCCCGGCGTACACCGGGGCAGT
CGGCGAGACTGTCGAGAGCCCCATGGCGGCGGGCACCGTGGTTGATAGCG
ATCGTGGCGTGGGCGGCGATGGGCGCGGAAATGTGCGGGGCGGGAGTGGC
GGTAGCGGTCGCAGCGGCGCTGGTGTCCTCGCGAAGGGCGCCAACGCCAA
GAGCTTCAAGCCAAACCACGGCGGCGCGAACACTCCGGCGTACGAGGGCA
TATTCGCACCCCGCGGCGGGGGCGGCGCCGGCGGCGCCGGAGGCGCCGCC
GGCGCAGGCGGCAGCCAGGGCACTGCCGCC back to top
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