mRNA_E-fasciculatus_F_contig10930.746.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig10930.746.1
Unique NamemRNA_E-fasciculatus_F_contig10930.746.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig10930.746.1 vs. uniprot
Match: A0A6H5K704_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K704_9PHAE)

HSP 1 Score: 135 bits (339), Expect = 3.560e-34
Identity = 144/153 (94.12%), Postives = 148/153 (96.73%), Query Frame = -3 
Query:    2 SAALAHPAAVEMSNYAKPVLRKDSMAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---IVWSAGQNVGHRRNYDQSSEIGGDSAAGSVYDLQPPAEDLEHSYHQDGYDDSVAASSPGAYS 451
            SAAL HPAAVEMSNYAKPVLRKDSMAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   IVWSAGQN+GHRR++DQSSEIG DSAAGSVY+LQPPAEDLEHSYHQDGYDDSVAASSPGAYS
Sbjct:  352 SAALPHPAAVEMSNYAKPVLRKDSMAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVWSAGQNMGHRRSFDQSSEIGDDSAAGSVYELQPPAEDLEHSYHQDGYDDSVAASSPGAYS 504
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10930.746.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K704_9PHAE3.560e-3494.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10930contigE-fasciculatus_F_contig10930:152..617 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size467
Cds size465
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927593.7333484-CDS-E-fasciculatus_F_contig10930:151..6161622927593.7333484-CDS-E-fasciculatus_F_contig10930:151..616Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10930 152..616 +
1695995611.5867755-CDS-E-fasciculatus_F_contig10930:151..6161695995611.5867755-CDS-E-fasciculatus_F_contig10930:151..616Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10930 152..616 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10930.746.1prot_E-fasciculatus_F_contig10930.746.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig10930 152..616 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig10930.746.1

>prot_E-fasciculatus_F_contig10930.746.1 ID=prot_E-fasciculatus_F_contig10930.746.1|Name=mRNA_E-fasciculatus_F_contig10930.746.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=155bp
CCKRRGRTQPRCRRTRPGGTSAPSPPRAVGGRTRTRPRCRRRSRRTGRSS
SGAQRSARPTRRCRRRRRCRPAAVAAAAAAAPAADGSLRRPPRCSARSRT
PAAGWGPASAGRPTMTSRPPPPPPPPWNPCARRASRSSTSPPPQGAPTPP
RRQCP
back to top

mRNA from alignment at E-fasciculatus_F_contig10930:152..617+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig10930.746.1 ID=mRNA_E-fasciculatus_F_contig10930.746.1|Name=mRNA_E-fasciculatus_F_contig10930.746.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=466bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10930:152..617+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TGCTGTAAGCGCCGGGGGAGGACGCAGCCACGCTGTCGTCGTACCCGTCC
TGGTGGTACGAGTGCTCCAAGTCCTCCGCGGGCGGTTGGAGGTCGTACAC
GGACCCGGCCGCGCTGTCGCCGCCGATCTCGGAGGACTGGTCGTAGTTCC
TCCGGTGCCCAACGTTCTGCCCGGCCGACCAGACGATGCCGCCGCCGCCG
CCGCTGCCGGCCTGCCGCGGTTGCTGCTGCTGCTGCCGCTGCTCCTGCGG
CGGACGGTTCCCTCCGTCGACCACCCCGCTGCTCAGCACGCTCGAGAACG
CCGGCGGCGGGTTGGGGTCCGGCGAGCGCCGGCCGCCCGACGATGACGTC
CCGGCCGCCGCCGCCGCCGCCGCCGCCATGGAATCCTTGCGCAAGACGGG
CTTCGCGTAGTTCGACATCTCCACCGCCGCAGGGTGCGCCAACGCCGCCG
AGGCGGCAGTGCCCTG
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10930:152..617+

>mRNA_E-fasciculatus_F_contig10930.746.1 ID=mRNA_E-fasciculatus_F_contig10930.746.1|Name=mRNA_E-fasciculatus_F_contig10930.746.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=930bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10930:152..617+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TGCTGTAAGCGCCGGGGGAGGACGCAGCCACGCTGTCGTCGTACCCGTCC
TGGTGGTACGAGTGCTCCAAGTCCTCCGCGGGCGGTTGGAGGTCGTACAC
GGACCCGGCCGCGCTGTCGCCGCCGATCTCGGAGGACTGGTCGTAGTTCC
TCCGGTGCCCAACGTTCTGCCCGGCCGACCAGACGATGCCGCCGCCGCCG
CCGCTGCCGGCCTGCCGCGGTTGCTGCTGCTGCTGCCGCTGCTCCTGCGG
CGGACGGTTCCCTCCGTCGACCACCCCGCTGCTCAGCACGCTCGAGAACG
CCGGCGGCGGGTTGGGGTCCGGCGAGCGCCGGCCGCCCGACGATGACGTC
CCGGCCGCCGCCGCCGCCGCCGCCGCCATGGAATCCTTGCGCAAGACGGG
CTTCGCGTAGTTCGACATCTCCACCGCCGCAGGGTGCGCCAACGCCGCCG
AGGCGGCAGTGCCCTTGCTGTAAGCGCCGGGGGAGGACGCAGCCACGCTG
TCGTCGTACCCGTCCTGGTGGTACGAGTGCTCCAAGTCCTCCGCGGGCGG
TTGGAGGTCGTACACGGACCCGGCCGCGCTGTCGCCGCCGATCTCGGAGG
ACTGGTCGTAGTTCCTCCGGTGCCCAACGTTCTGCCCGGCCGACCAGACG
ATGCCGCCGCCGCCGCCGCTGCCGGCCTGCCGCGGTTGCTGCTGCTGCTG
CCGCTGCTCCTGCGGCGGACGGTTCCCTCCGTCGACCACCCCGCTGCTCA
GCACGCTCGAGAACGCCGGCGGCGGGTTGGGGTCCGGCGAGCGCCGGCCG
CCCGACGATGACGTCCCGGCCGCCGCCGCCGCCGCCGCCGCCATGGAATC
CTTGCGCAAGACGGGCTTCGCGTAGTTCGACATCTCCACCGCCGCAGGGT
GCGCCAACGCCGCCGAGGCGGCAGTGCCCT
back to top