mRNA_E-fasciculatus_F_contig1093.743.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1093.743.1 vs. uniprot
Match: D8LSD2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSD2_ECTSI) HSP 1 Score: 338 bits (866), Expect = 1.030e-110 Identity = 189/227 (83.26%), Postives = 198/227 (87.22%), Query Frame = 1
Query: 1 MKKPRCMVLTLLALFCLRPQAFVPISSTQPRARLASSAGSHRLSREARASPLSSCNIEEGGGGRRAVQPTRRRNRGRGGTGKSRIATGGVRELRAGLDMPGLGGLLEQSSRHHIPSAFTGGTVGVLGTLSAIQLKINQVKELTACPYCRSSGQLPCGTCYGVGSVTVPDTVASSNEVTTTTLTCPTCRGKTFIXXVNCKGDGRQVPLFLNKKVSRDPESEIEDVGYA 681
MKKP C +LTLLALFC PQAFVPISS+QPRARLAS AGSHRLSREARASPLSSCNIE G GGR AVQPTRRRNRGRGGTGKSR ATGGVRELRAG D+PGLG LLEQS+RHHIPSAFTGGTVGVLGTLSAIQLKIN+VKELTACPYCRS+GQLPC TC+GVGS++V DTVASSNEVTTTTLT XX DGR VPLFLNKKVSRDPESEIEDVGYA
Sbjct: 1 MKKP-CCILTLLALFCQSPQAFVPISSSQPRARLAS-AGSHRLSREARASPLSSCNIE-GRGGRTAVQPTRRRNRGRGGTGKSRTATGGVRELRAGFDLPGLGALLEQSTRHHIPSAFTGGTVGVLGTLSAIQLKINEVKELTACPYCRSTGQLPCATCFGVGSISVLDTVASSNEVTTTTLTXXXXXXXXXXXXXXXXXDGRGVPLFLNKKVSRDPESEIEDVGYA 224
BLAST of mRNA_E-fasciculatus_F_contig1093.743.1 vs. uniprot
Match: A0A835YP24_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YP24_9STRA) HSP 1 Score: 122 bits (305), Expect = 2.560e-29 Identity = 57/117 (48.72%), Postives = 77/117 (65.81%), Query Frame = 1
Query: 325 SSRHHIPSAFTGGTVGVLGTLSAIQLKINQVKELTACPYCRSSGQLPCGTCYGVGSVTVPDTVASSNEVTTTTLTCPTCRGKTFIXXVNCKGDGRQVPLFLNKKVSRDPESEIEDVG 675
SS H+ + GG+VGV+GTL I+ K V++ + C YCR SG L CG C G G +T+ + V + + +L CPTC G T+I +NCKGDGR VP FLN+K SRDPE E+E++G
Sbjct: 12 SSTEHVSAGILGGSVGVIGTLLGIEWKKYNVRQASECCYCRGSGHLVCGQCLGTGELTLVNAVTNKSI----SLGCPTCSGMTYITCINCKGDGRSVPNFLNRKTSRDPEDELEEIG 124
BLAST of mRNA_E-fasciculatus_F_contig1093.743.1 vs. uniprot
Match: A0A8J2WYK4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WYK4_9STRA) HSP 1 Score: 87.0 bits (214), Expect = 1.770e-16 Identity = 45/112 (40.18%), Postives = 63/112 (56.25%), Query Frame = 1
Query: 340 IPSAFTGGTVGVLGTLSAIQLKINQVKELTACPYCRSSGQLPCGTCYGVGSVTVPDTVASSNEVTTTTLTCPTCRGKTFIXXVNCKGDGRQVPLFLNKKVSRDPESEIEDVG 675
+ SAF GGTVG +G++ AI+ K +VK+ CPYC +G + C C G G + E C C G+T NCKG GR +P L+ +VSRDPE+E+E++G
Sbjct: 56 LASAFLGGTVGAVGSVVAIEAKRVKVKKSKQCPYCDGTGAIACAACLGTG--------LTDGEP------CRLCGGRTVHTCENCKGRGRFIPTMLDARVSRDPETELEEIG 153
BLAST of mRNA_E-fasciculatus_F_contig1093.743.1 vs. uniprot
Match: A0A7S1XU55_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XU55_9STRA) HSP 1 Score: 82.8 bits (203), Expect = 7.030e-15 Identity = 45/111 (40.54%), Postives = 62/111 (55.86%), Query Frame = 1
Query: 349 AFTGGTVGVLGTLSAIQLKINQVKELTACPYCRSSGQLPCGTCYGVGSVTVPDTVASSNEVTTTTLTCPTCRGKTFIXXVNCKGDGRQVPLFLNKKVSRDPESEIEDVGYA 681
AF GG GVLG+L AI+ K ++ + +ACPYC G+LPC C+G G VT+ DT ++ XX R VPL L+++V+RDPE E+ED+G A
Sbjct: 64 AFAGGATGVLGSLFAIEYKKSKQRARSACPYCVGEGRLPCAVCWGTGKVTLADTGVEADXXX--------XXXXXXXXXXXXXXXXRMVPLMLDRRVARDPEDELEDIGLA 166
BLAST of mRNA_E-fasciculatus_F_contig1093.743.1 vs. uniprot
Match: A0A7R9U8V3_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U8V3_9STRA) HSP 1 Score: 77.8 bits (190), Expect = 3.060e-13 Identity = 43/114 (37.72%), Postives = 62/114 (54.39%), Query Frame = 1
Query: 340 IPSAFTGGTVGVLGTLSAIQLKINQVKELTACPYCRSSGQLPCGTCYGVGSVTVPDTVASSNEVTTTTLTCPTCRGKTFIXXVNCKGDGRQVPLFLNKKVSRDPESEIEDVGYA 681
+ AF GGTVGV+G+L AI+++ Q ++ ACPYC +G+L C C+G G V + S V + XX R VPL L+++ SRDPE E+E++G A
Sbjct: 47 VACAFAGGTVGVMGSLVAIEIRKLQQRKRNACPYCVGTGRLTCAVCWGAGKVEIAGAQGSQTVV----VDXXXXXXXXXXXXXXXXXXXRLVPLMLDRRASRDPEDELEEIGLA 156
BLAST of mRNA_E-fasciculatus_F_contig1093.743.1 vs. uniprot
Match: A0A7S2WEZ4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WEZ4_9STRA) HSP 1 Score: 73.2 bits (178), Expect = 1.720e-11 Identity = 52/148 (35.14%), Postives = 71/148 (47.97%), Query Frame = 1
Query: 241 GKSRIATGGVRELRAGLDMPGLGGLLEQSSRHHIPSAFTGGTVGVLGTLSAIQLKINQVKELTACPYCRSSGQLPCGTCYGVGSVTVPDTVASSNEVTT---TTLTCPTCRGKTFIXXVNCKGDGRQVPLFLNKKVSRDPESEIEDVG 675
G+ + GVR L GL + G + + + F GG+VGVLG + AI++K + K+ + CPYC +G L C CYG G + V T S V T XX P L+++VSRDPESE+EDVG
Sbjct: 29 GRPGVRRAGVRRLDHGLAVSPAQGAAD------VLAGFAGGSVGVLGAIFAIEMKKRETKKKSECPYCNGNGHLTCAKCYGSGFMVV--THVSDQGVPLGQPVRCTXXXXXXXXXXXXXXXXXXXXXXPTILDQRVSRDPESELEDVG 168
BLAST of mRNA_E-fasciculatus_F_contig1093.743.1 vs. uniprot
Match: A0A6V1KEG1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1KEG1_HETAK) HSP 1 Score: 72.8 bits (177), Expect = 2.730e-11 Identity = 46/111 (41.44%), Postives = 55/111 (49.55%), Query Frame = 1
Query: 346 SAFTGGTVGVLGTLSAIQLKINQVKELTACPYCRSSGQLPCGTCYGVGSV-TVPDTVASSNEVTTTTLTCPTCRGKTFIXXVNCKGDGRQVPLFLNKKVSRDPESEIEDVG 675
+ F GG +GV GTL A+ K +V E CPYC G+L C C G G + D A+ XX DGR VPL LN+K SRDPESE+EDVG
Sbjct: 73 TGFVGGAIGVTGTLIALDSKKVKVAERAKCPYCTGDGRLTCVRCLGAGMLPAAADGGAACXXXX--------XXXXXXXXXXXXXXDGRAVPLMLNRKASRDPESELEDVG 175
BLAST of mRNA_E-fasciculatus_F_contig1093.743.1 vs. uniprot
Match: A0A7S1TK16_9RHOD (Hypothetical protein n=1 Tax=Erythrolobus australicus TaxID=1077150 RepID=A0A7S1TK16_9RHOD) HSP 1 Score: 71.6 bits (174), Expect = 3.220e-11 Identity = 40/119 (33.61%), Postives = 59/119 (49.58%), Query Frame = 1
Query: 340 IPSAFTGGTVGVLGTLSAIQLKINQVKELTACPYCRSSGQLPCGTCYGVGSVTVPDTVASSNEVTTTT------------LTCPTCRGKTFIXXVNCKGDGRQVPLFLNKKVSRDPESE 660
I +AF GGTVGV+G+L A +L+ + KE CPYC +G+L CG C G G + + + A + + T + C C G + +C GDGR +P + + D E E
Sbjct: 26 IAAAFAGGTVGVMGSLIAWELRQLRDKESKQCPYCLGTGRLRCGRCLGQGELLISEVGAQAKALPKTESPQPLQQQLDGFVKCSQCEGAASVECCHCGGDGRIIPETIEHAATGDLERE 144
BLAST of mRNA_E-fasciculatus_F_contig1093.743.1 vs. uniprot
Match: A0A5J4ZBM1_PORPP (Protein ORANGE-LIKE, chloroplastic n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4ZBM1_PORPP) HSP 1 Score: 65.9 bits (159), Expect = 5.970e-8 Identity = 35/94 (37.23%), Postives = 51/94 (54.26%), Query Frame = 1
Query: 340 IPSAFTGGTVGVLGTLSAIQLKINQVKELTACPYCRSSGQLPCGTCYGVGSVTVPDTVASSNEVTTTTLTCPTCRGKTFIXXVNCKGDGRQVPL 621
I SAF GGTVGV+GTL A++ E C YCR +G+L CG+C G+ +PD + C C G+ + ++C+G GR +P+
Sbjct: 238 IGSAFAGGTVGVMGTLIALEWAKIDTLERQQCSYCRGTGKLICGSCCGLR--VMPDAQTGQRD-------CDNCSGQGGVECMHCEGSGRLLPI 322
BLAST of mRNA_E-fasciculatus_F_contig1093.743.1 vs. uniprot
Match: A0A7S3EVL4_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3EVL4_9EUKA) HSP 1 Score: 61.6 bits (148), Expect = 5.530e-7 Identity = 32/91 (35.16%), Postives = 52/91 (57.14%), Query Frame = 1
Query: 346 SAFTGGTVGVLGTLSAIQLKINQVKELTACPYCRSSGQLPCGTCYGVGSVTVPDTVASSNEVTTTTLTCPTCRGKTFIXXVNCKGDGRQVP 618
+ F GG+VGV+GT+ A +K QVK+ C YC +GQ+ CG C G+ ++++ D ++ +++ CP C G + X +G G VP
Sbjct: 90 NGFIGGSVGVMGTVLATVVKKGQVKDRLKCSYCDGTGQIGCGHCLGLATLSMMD----ADTGKWSSVPCPNCEGTRTVVXXXXQGSGISVP 176 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1093.743.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1093.743.1 >prot_E-fasciculatus_F_contig1093.743.1 ID=prot_E-fasciculatus_F_contig1093.743.1|Name=mRNA_E-fasciculatus_F_contig1093.743.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=228bp MKKPRCMVLTLLALFCLRPQAFVPISSTQPRARLASSAGSHRLSREARASback to top mRNA from alignment at E-fasciculatus_F_contig1093:5268..7998+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1093.743.1 ID=mRNA_E-fasciculatus_F_contig1093.743.1|Name=mRNA_E-fasciculatus_F_contig1093.743.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2731bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1093:5268..7998+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1093:5268..7998+ >mRNA_E-fasciculatus_F_contig1093.743.1 ID=mRNA_E-fasciculatus_F_contig1093.743.1|Name=mRNA_E-fasciculatus_F_contig1093.743.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1368bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1093:5268..7998+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |