mRNA_E-fasciculatus_F_contig10926.741.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig10926.741.1 vs. uniprot
Match: D8LMX5_ECTSI (Heat shock protein 40 like protein/ DnaJ domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMX5_ECTSI) HSP 1 Score: 400 bits (1027), Expect = 1.800e-127 Identity = 346/386 (89.64%), Postives = 350/386 (90.67%), Query Frame = 1
Query: 1 KVRLMLGTGLIRCTERERENGASGASLLHSCVTDFAGSPDNAPQLKELAIDRLSIAAMILASADPAVDAGWVDSVGLTVLHRVAEALDLPYLALLLEERQKSQDRRDQILLDERCLLKGWTPLHYAAAEGSPVGVSTLLAAGASVSVRGAVLDGIESSSSNXXXXXXXXXXXXXXXGTALQLARALLSKEGGGPRKKGLQEVARQLSAATQAVERAKEQRERXXXXXXXXXXXSEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTA-AGDEDSVADRGGLAANGGTEGVPTGRGAGDGAPVAXXXXXXXXXXXXXX-----AGGASSAAPAVSESAHESSMSRDDLLAQ 1140
+VRLMLGTGLIRCTERERENG+SGASLLHSCVTDFAGSPDNAPQLKELAIDRLSIAAMILAS DPAVDAGWVDSVGLTVLHRVAEALDLPYLALLLEERQKSQ+RRDQILLDERCLLKGWTPLHYAAAEGSPVGVSTLL AGASVSVRGAVLDGIE SSSN XXXXXXXXXX GTALQLARALLSKEG GPRKKGLQEVARQLSAATQAVERAKEQR XXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXX GDEDSVADRG LAANGG EG PTG+ GDGAPVA XXXXXXXXXX AG AS AAPAVSESAHESSMSRDDLLAQ
Sbjct: 324 EVRLMLGTGLIRCTERERENGSSGASLLHSCVTDFAGSPDNAPQLKELAIDRLSIAAMILASTDPAVDAGWVDSVGLTVLHRVAEALDLPYLALLLEERQKSQERRDQILLDERCLLKGWTPLHYAAAEGSPVGVSTLLTAGASVSVRGAVLDGIEPSSSNGAXXXXXXXXXXG--GTALQLARALLSKEGAGPRKKGLQEVARQLSAATQAVERAKEQRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGXXXXXXXXXXXXXXXXXXXXXKTGDEDSVADRG-LAANGGAEGAPTGKDTGDGAPVAVVAAXXXXXXXXXXXXXXXAGNASPAAPAVSESAHESSMSRDDLLAQ 706
BLAST of mRNA_E-fasciculatus_F_contig10926.741.1 vs. uniprot
Match: A0A6H5K1P9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1P9_9PHAE) HSP 1 Score: 267 bits (683), Expect = 1.780e-76 Identity = 264/383 (68.93%), Postives = 267/383 (69.71%), Query Frame = 1
Query: 1 KVRLMLGTGLIRCTERERENGASGASLLHSCVTDFAGSPDNAPQLKELAIDRLSIAAMILASADPAVDAGWVDSVGLTVLHRVAEALDLPYLALLLEERQKSQDRRDQILLDERCLLKGWTPLHYAAAEGSPVGVSTLLAAGASVSVRGAVLDGIESSSSNXXXXXXXXXXXXXXXGTALQLARALLSKEGGGPRKKGLQEVARQLSAATQAVERAKEQRERXXXXXXXXXXXSEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTAAGDEDS-VADRGGLAANGGTEGVPTGRGAGDGAPVAXXXXXXXXXXXXXXAGGASS--AAPAVSESAHESSMSRDDLLAQ 1140
+VRLMLGTGLIRCTERERENG SGASLLHSCVTDFAGSPDNAPQLKELA+DRLSIAA ILLDERCLLKGWTPLHYAAAEGSPV VSTLLAAGASVSVRGAVLDGIE SSSN XXXXXXXXXX GTALQLARALLSKEG GPRKKGLQEVARQLSAATQAVERAKEQR XXXXXXXXX SEVXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX VADRG LAANGG EG PTG+GA DGAPVA XXXX AAPAVSESAHESSMSRDDLLAQ
Sbjct: 374 EVRLMLGTGLIRCTERERENGTSGASLLHSCVTDFAGSPDNAPQLKELAVDRLSIAA---------------------------------------------------ILLDERCLLKGWTPLHYAAAEGSPVCVSTLLAAGASVSVRGAVLDGIEPSSSNGAXXXXXXXXXXG--GTALQLARALLSKEGAGPRKKGLQEVARQLSAATQAVERAKEQRXXXXXXXXXXXKRSEVXXXXXXXXXXRELLSRKQRQLKDKQERLERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVADRG-LAANGGAEGAPTGKGAEDGAPVAAAAAAATSRPXXXXXXXXXXXXAAPAVSESAHESSMSRDDLLAQ 702
BLAST of mRNA_E-fasciculatus_F_contig10926.741.1 vs. uniprot
Match: A0A836CBZ1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBZ1_9STRA) HSP 1 Score: 127 bits (318), Expect = 4.020e-28 Identity = 93/214 (43.46%), Postives = 115/214 (53.74%), Query Frame = 1
Query: 43 ERERENGASGASLLHSCVTDFAGSPDNAPQLKELAI-DRLSIAAMILA--SADPAVDAGWVDSVGLTVLHRVAEALDLPYLALLLEERQKSQDRR--DQILLDERCLLKGWTPLHYAAAEGSPVGVSTLLAAGASVSVRGAVLDGIESSSSNXXXXXXXXXXXXXXXGTALQLARALLSKEGGGPRKKG--LQEVARQLSAATQAVERAKEQRE 663
ERE E G SG SLLH+CVT A + RL IA ++LA ++ AVD VD GLTVLHR AEA D+P L LL +R +SQ QILL+ERCL +GWTPLHYAA+ GS GV+ LL GA V A + T L L + L+ ++GGG RK G L EV R L +A + ERA+E+RE
Sbjct: 421 EREHEGGKSGPSLLHACVTTEALRKEGGDXXXXXXXAGRLEIAKLLLAWEASAAAVDVACVDEDGLTVLHRAAEACDVPLLRALLADRGESQRPAVTPQILLNERCLARGWTPLHYAASRGSTEGVTVLLGKGAPVGAHAAPPKAPSDKGA-----------------TPLDLVKQLVQRQGGGRRKGGGSLTEVERVLRSALKEAERAREERE 617
BLAST of mRNA_E-fasciculatus_F_contig10926.741.1 vs. uniprot
Match: A0A7S1UAS6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UAS6_9STRA) HSP 1 Score: 70.5 bits (171), Expect = 1.580e-9 Identity = 58/174 (33.33%), Postives = 81/174 (46.55%), Query Frame = 1
Query: 31 IRCTERERENGASGASLLHSCVTDFAGSPDNAPQLKELAI--------------------DRLSIAAMILASADPAVDAGWVDSVGLTVLHRVAEALDLPYLALLLE----------------ERQKSQDRRDQILLDERCLLKGWTPLHYAAAEGSPVGVSTLLAAGASVSVR 444
+R +ERERE G SGA+LLH+CV+ S A + A +R +AA +L + +D G D G TVLHR A A D +L LLL+ +++K+ + L+ +CL +GWT LHY+ A G LLAAGA V +R
Sbjct: 186 LRPSERERERGKSGATLLHACVSVNLPSAGAANAVLPKAAQXXXXXXVGGSSGKAVNRPAERRKVAAFLLTQEE--LDVGAYDEDGCTVLHR-ASASDPLFLQLLLKTVLGVQIGDDGEASKTKKKKASAAHAALDLNNKCLSRGWTALHYSVAAGLAGNCRLLLAAGARVRIR 356 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10926.741.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig10926.741.1 >prot_E-fasciculatus_F_contig10926.741.1 ID=prot_E-fasciculatus_F_contig10926.741.1|Name=mRNA_E-fasciculatus_F_contig10926.741.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=376bp MLGTGLIRCTERERENGASGASLLHSCVTDFAGSPDNAPQLKELAIDRLSback to top mRNA from alignment at E-fasciculatus_F_contig10926:46..4085+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig10926.741.1 ID=mRNA_E-fasciculatus_F_contig10926.741.1|Name=mRNA_E-fasciculatus_F_contig10926.741.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=4040bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10926:46..4085+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10926:46..4085+ >mRNA_E-fasciculatus_F_contig10926.741.1 ID=mRNA_E-fasciculatus_F_contig10926.741.1|Name=mRNA_E-fasciculatus_F_contig10926.741.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2256bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10926:46..4085+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |