mRNA_E-fasciculatus_F_contig10923.740.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig10923.740.1
Unique NamemRNA_E-fasciculatus_F_contig10923.740.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10923.740.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10923contigE-fasciculatus_F_contig10923:3502..3995 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size494
Cds size441
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927592.8285294-CDS-E-fasciculatus_F_contig10923:3501..39421622927592.8285294-CDS-E-fasciculatus_F_contig10923:3501..3942Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10923 3502..3942 +
1695995611.2343562-CDS-E-fasciculatus_F_contig10923:3501..39421695995611.2343562-CDS-E-fasciculatus_F_contig10923:3501..3942Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10923 3502..3942 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927592.8414385-UTR-E-fasciculatus_F_contig10923:3942..39951622927592.8414385-UTR-E-fasciculatus_F_contig10923:3942..3995Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10923 3943..3995 +
1695995611.2442722-UTR-E-fasciculatus_F_contig10923:3942..39951695995611.2442722-UTR-E-fasciculatus_F_contig10923:3942..3995Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10923 3943..3995 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10923.740.1prot_E-fasciculatus_F_contig10923.740.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig10923 3502..3942 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig10923.740.1

>prot_E-fasciculatus_F_contig10923.740.1 ID=prot_E-fasciculatus_F_contig10923.740.1|Name=mRNA_E-fasciculatus_F_contig10923.740.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=147bp
LSRRITQHPAQLIHARSFPEGTAAAIPIVITPANGGQSTRLHVARLSTLS
APSSKCLFLKRRGTKHSPSAAVARLNQPFDFFLQPTLTAATSPLPSATQE
LQATLRSPLQQVSPFLLLLLWLEILAQQQAEPEGACALSKLFCPDL*
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mRNA from alignment at E-fasciculatus_F_contig10923:3502..3995+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig10923.740.1 ID=mRNA_E-fasciculatus_F_contig10923.740.1|Name=mRNA_E-fasciculatus_F_contig10923.740.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=494bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10923:3502..3995+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTGTCCAGAAGGATCACCCAGCATCCTGCTCAGCTCATCCATGCGCGAAG
CTTCCCCGAAGGCACCGCTGCTGCCATCCCCATAGTGATCACCCCCGCTA
ACGGGGGACAAAGCACCCGTCTCCATGTCGCCCGCCTCTCTACACTCTCT
GCTCCCAGCAGCAAGTGTCTCTTTCTCAAAAGGCGTGGCACAAAACACTC
CCCCTCTGCTGCTGTCGCTCGGCTCAATCAACCCTTCGATTTTTTTCTCC
AACCAACACTCACGGCTGCGACTTCTCCCTTGCCCTCTGCCACGCAAGAG
CTACAGGCCACGCTCAGGTCTCCTCTGCAACAGGTATCTCCTTTTTTATT
ACTGCTGCTGTGGTTGGAAATTCTTGCACAACAGCAAGCAGAGCCAGAGG
GAGCGTGTGCACTCAGCAAGTTGTTTTGCCCTGACCTGTGAGTGATTTTA
TGGGATGCTCCCAGCAGGTGGCGGCGATTTTTCCTCCTCTTCTT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10923:3502..3995+

>mRNA_E-fasciculatus_F_contig10923.740.1 ID=mRNA_E-fasciculatus_F_contig10923.740.1|Name=mRNA_E-fasciculatus_F_contig10923.740.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=882bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10923:3502..3995+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTGTCCAGAAGGATCACCCAGCATCCTGCTCAGCTCATCCATGCGCGAAG
CTTCCCCGAAGGCACCGCTGCTGCCATCCCCATAGTGATCACCCCCGCTA
ACGGGGGACAAAGCACCCGTCTCCATGTCGCCCGCCTCTCTACACTCTCT
GCTCCCAGCAGCAAGTGTCTCTTTCTCAAAAGGCGTGGCACAAAACACTC
CCCCTCTGCTGCTGTCGCTCGGCTCAATCAACCCTTCGATTTTTTTCTCC
AACCAACACTCACGGCTGCGACTTCTCCCTTGCCCTCTGCCACGCAAGAG
CTACAGGCCACGCTCAGGTCTCCTCTGCAACAGGTATCTCCTTTTTTATT
ACTGCTGCTGTGGTTGGAAATTCTTGCACAACAGCAAGCAGAGCCAGAGG
GAGCGTGTGCACTCAGCAAGTTGTTTTGCCCTGACCTGTGACTGTCCAGA
AGGATCACCCAGCATCCTGCTCAGCTCATCCATGCGCGAAGCTTCCCCGA
AGGCACCGCTGCTGCCATCCCCATAGTGATCACCCCCGCTAACGGGGGAC
AAAGCACCCGTCTCCATGTCGCCCGCCTCTCTACACTCTCTGCTCCCAGC
AGCAAGTGTCTCTTTCTCAAAAGGCGTGGCACAAAACACTCCCCCTCTGC
TGCTGTCGCTCGGCTCAATCAACCCTTCGATTTTTTTCTCCAACCAACAC
TCACGGCTGCGACTTCTCCCTTGCCCTCTGCCACGCAAGAGCTACAGGCC
ACGCTCAGGTCTCCTCTGCAACAGGTATCTCCTTTTTTATTACTGCTGCT
GTGGTTGGAAATTCTTGCACAACAGCAAGCAGAGCCAGAGGGAGCGTGTG
CACTCAGCAAGTTGTTTTGCCCTGACCTGTGA
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