mRNA_E-fasciculatus_F_contig10922.739.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig10922.739.1
Unique NamemRNA_E-fasciculatus_F_contig10922.739.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig10922.739.1 vs. uniprot
Match: A0A6H5K1D7_9PHAE (CULLIN_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1D7_9PHAE)

HSP 1 Score: 477 bits (1228), Expect = 1.050e-167
Identity = 234/236 (99.15%), Postives = 235/236 (99.58%), Query Frame = 1 
Query:    1 HVQVLTTGYWPGYPAMEVGMPDEMKEHVECFKCYYQNKYQGRRLVWQPVLGQCILKVAFPKGRKELAVSQLQTLVLWCFSTVDEVSFADVKAKTAIEDGELRRTLQSLACGKVRVLHKEPRGREVNDGDKFLFNKEFTAKLHRIRINSIQLKETSEENEKTHEAVFRDRQYQVDAAIVRIMKARKNLAHTMLMSELFSQVKFPATPVDLKKRIESLIERDYLERDPNKPGDYRYLA 708
            HVQVLTTGYWPGYPAMEVGMPDEMKEHVECFKCYYQNKYQGRRLVWQPVLGQCILKVAFPKGRKELAVSQLQTLVLWCFST DEVSFADVKAKTAIEDGELRRTLQSLACGKVRVLHKEPRGREVNDGDKFLFNK+FTAKLHRIRINSIQLKETSEENEKTHEAVFRDRQYQVDAAIVRIMKARKNLAHTMLMSELFSQVKFPATPVDLKKRIESLIERDYLERDPNKPGDYRYLA
Sbjct:  172 HVQVLTTGYWPGYPAMEVGMPDEMKEHVECFKCYYQNKYQGRRLVWQPVLGQCILKVAFPKGRKELAVSQLQTLVLWCFSTDDEVSFADVKAKTAIEDGELRRTLQSLACGKVRVLHKEPRGREVNDGDKFLFNKDFTAKLHRIRINSIQLKETSEENEKTHEAVFRDRQYQVDAAIVRIMKARKNLAHTMLMSELFSQVKFPATPVDLKKRIESLIERDYLERDPNKPGDYRYLA 407
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BLAST of mRNA_E-fasciculatus_F_contig10922.739.1 vs. uniprot
Match: D7FQS5_ECTSI (CULLIN_2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQS5_ECTSI)

HSP 1 Score: 472 bits (1215), Expect = 6.440e-161
Identity = 230/236 (97.46%), Postives = 234/236 (99.15%), Query Frame = 1 
Query:    1 HVQVLTTGYWPGYPAMEVGMPDEMKEHVECFKCYYQNKYQGRRLVWQPVLGQCILKVAFPKGRKELAVSQLQTLVLWCFSTVDEVSFADVKAKTAIEDGELRRTLQSLACGKVRVLHKEPRGREVNDGDKFLFNKEFTAKLHRIRINSIQLKETSEENEKTHEAVFRDRQYQVDAAIVRIMKARKNLAHTMLMSELFSQVKFPATPVDLKKRIESLIERDYLERDPNKPGDYRYLA 708
            HVQVLTTGYWPGYPAMEVGMPDEMKEHVECF+CYYQNKYQGRRLVWQPVLGQC+LKVAFPKGRKELAVSQLQTLVLWCFST DEVSFA+VKAKTAIEDGELRRTLQSLACGKVRVLHKEPRGREVNDGD FLFNK+FTAKLHRIRINSIQLKETSEENEKTHEAVFRDRQYQVDAAIVRIMKARKNLAHTMLMSELFSQVKFPATPVDLKKRIESLIERDYLERDPNKPGDYRYLA
Sbjct:  515 HVQVLTTGYWPGYPAMEVGMPDEMKEHVECFRCYYQNKYQGRRLVWQPVLGQCVLKVAFPKGRKELAVSQLQTLVLWCFSTDDEVSFAEVKAKTAIEDGELRRTLQSLACGKVRVLHKEPRGREVNDGDNFLFNKDFTAKLHRIRINSIQLKETSEENEKTHEAVFRDRQYQVDAAIVRIMKARKNLAHTMLMSELFSQVKFPATPVDLKKRIESLIERDYLERDPNKPGDYRYLA 750
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BLAST of mRNA_E-fasciculatus_F_contig10922.739.1 vs. uniprot
Match: A0A835ZG50_9STRA (Cullin family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG50_9STRA)

HSP 1 Score: 325 bits (834), Expect = 2.800e-103
Identity = 166/237 (70.04%), Postives = 191/237 (80.59%), Query Frame = 1 
Query:    4 VQVLTTGYWPGYPAMEVGMPDEMKEHVECFKCYYQNKYQGRRLVWQPVLGQCILKVAFPKGRKELAVSQLQ-TLVLWCFSTVDE-VSFADVKAKTAIEDGELRRTLQSLACGKVRVLHKEPRGREVNDGDKFLFNKEFTAKLHRIRINSIQLKETSEENEKTHEAVFRDRQYQVDAAIVRIMKARKNLAHTMLMSELFSQVKFPATPVDLKKRIESLIERDYLERDPNKPGDYRYLA 708
            V VLTTGYWP YP  +V +P E+++H+  F+ +Y  K+QGRR+ WQ  LG CILK  FP GRKELAVSQLQ T+++ CF T D  V FA+VKA+T IEDGELRRTLQSLACGKVRVL KEP+GREV DGD F  N +F  K  RIRIN+IQL+ET EENEKTHEAVFRDRQYQVDAAIVRIMKARK L+H +LMSEL +Q+KFPA P+DLKKRIESLIERDYLERD + P  Y YLA
Sbjct:  565 VHVLTTGYWPAYPPADVAVPAEIQDHMARFEDFYAIKFQGRRIAWQHNLGHCILKARFPSGRKELAVSQLQATVLMLCFGTGDALVPFAEVKARTRIEDGELRRTLQSLACGKVRVLRKEPKGREVEDGDAFAINADFAHKQLRIRINTIQLRETVEENEKTHEAVFRDRQYQVDAAIVRIMKARKTLSHPLLMSELMAQLKFPAKPLDLKKRIESLIERDYLERDEDNPTMYNYLA 801
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BLAST of mRNA_E-fasciculatus_F_contig10922.739.1 vs. uniprot
Match: A0A6A4KY20_9ERIC (CULLIN_2 domain-containing protein (Fragment) n=1 Tax=Rhododendron williamsianum TaxID=262921 RepID=A0A6A4KY20_9ERIC)

HSP 1 Score: 307 bits (786), Expect = 2.460e-102
Identity = 152/235 (64.68%), Postives = 182/235 (77.45%), Query Frame = 1 
Query:    4 VQVLTTGYWPGYPAMEVGMPDEMKEHVECFKCYYQNKYQGRRLVWQPVLGQCILKVAFPKGRKELAVSQLQTLVLWCFSTVDEVSFADVKAKTAIEDGELRRTLQSLACGKVRVLHKEPRGREVNDGDKFLFNKEFTAKLHRIRINSIQLKETSEENEKTHEAVFRDRQYQVDAAIVRIMKARKNLAHTMLMSELFSQVKFPATPVDLKKRIESLIERDYLERDPNKPGDYRYLA 708
            V VLTTGYWP YP M+V +P E+  + + FK +Y +KY GRRL+WQ  LG C+LK  FPKG+KELAVS  QT+VL  F+    +SF D+K  T+IED ELRRTLQSLACGKVRVL K P+GREV D D F FN+ FTA L+RI++N+IQ+KET EEN  T E VF+DRQYQVDAAIVRIMK RK L+HT+L++ELF Q+KFP  P DLKKRIESLI+R+YLERD N P  Y YLA
Sbjct:   50 VHVLTTGYWPTYPPMDVRLPHELNLYQDIFKEFYLSKYSGRRLMWQNSLGHCVLKAEFPKGKKELAVSLFQTVVLMLFNDAQTLSFQDIKDSTSIEDKELRRTLQSLACGKVRVLQKLPKGREVEDDDSFEFNEGFTAPLYRIKVNAIQMKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIYNYLA 284
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BLAST of mRNA_E-fasciculatus_F_contig10922.739.1 vs. uniprot
Match: A0A371G0R6_MUCPR (Cullin-4 (Fragment) n=2 Tax=Fabaceae TaxID=3803 RepID=A0A371G0R6_MUCPR)

HSP 1 Score: 309 bits (791), Expect = 2.910e-102
Identity = 152/235 (64.68%), Postives = 185/235 (78.72%), Query Frame = 1 
Query:    4 VQVLTTGYWPGYPAMEVGMPDEMKEHVECFKCYYQNKYQGRRLVWQPVLGQCILKVAFPKGRKELAVSQLQTLVLWCFSTVDEVSFADVKAKTAIEDGELRRTLQSLACGKVRVLHKEPRGREVNDGDKFLFNKEFTAKLHRIRINSIQLKETSEENEKTHEAVFRDRQYQVDAAIVRIMKARKNLAHTMLMSELFSQVKFPATPVDLKKRIESLIERDYLERDPNKPGDYRYLA 708
            V VLTTGYWP YP M+V +P E+  + + FK +Y +KY GRRL+WQ  LG C+LK  FPKG+KELAVS  QT+VL  F+  +++SF D+K  T+IED ELRRTLQSLACGKVRVL K P+GR+V D D F+FN+ FTA L+RI++N+IQLKET EEN  T E VF+DRQYQVDAAIVRIMK RK L+HT+L++ELF Q+KFP  P DLKKRIESLI+R+YLERD N P  Y YLA
Sbjct:  108 VHVLTTGYWPTYPPMDVRLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHCVLKAEFPKGKKELAVSLFQTVVLMLFNDAEKLSFQDIKDSTSIEDKELRRTLQSLACGKVRVLLKLPKGRDVEDDDSFVFNEGFTAPLYRIKVNAIQLKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIYNYLA 342
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BLAST of mRNA_E-fasciculatus_F_contig10922.739.1 vs. uniprot
Match: A0A5P1EGZ3_ASPOF (CULLIN_2 domain-containing protein n=1 Tax=Asparagus officinalis TaxID=4686 RepID=A0A5P1EGZ3_ASPOF)

HSP 1 Score: 308 bits (789), Expect = 2.550e-101
Identity = 151/235 (64.26%), Postives = 183/235 (77.87%), Query Frame = 1 
Query:    4 VQVLTTGYWPGYPAMEVGMPDEMKEHVECFKCYYQNKYQGRRLVWQPVLGQCILKVAFPKGRKELAVSQLQTLVLWCFSTVDEVSFADVKAKTAIEDGELRRTLQSLACGKVRVLHKEPRGREVNDGDKFLFNKEFTAKLHRIRINSIQLKETSEENEKTHEAVFRDRQYQVDAAIVRIMKARKNLAHTMLMSELFSQVKFPATPVDLKKRIESLIERDYLERDPNKPGDYRYLA 708
            V VLTTGYWP YP M+V +P E+  + + FK +Y +KY GRRL+W   LGQC+LK  FPKG+KELAVS  QT+VL  F+   ++SF D+K  T IED ELRRTLQSLACGKVRVL K P+GREV D D F FN+EF+A L+RI++N+IQ+KET EEN  T E VF+DRQYQ+DAAIVRIMK RK L+HT+L++ELF Q+KFP  P DLKKRIESLI+R+YLERD N P  Y YLA
Sbjct:  154 VHVLTTGYWPTYPPMDVKLPHELNVYQDIFKEFYLSKYSGRRLMWHNSLGQCVLKADFPKGKKELAVSLFQTVVLMLFNDTQKLSFEDIKDSTGIEDKELRRTLQSLACGKVRVLQKFPKGREVEDEDTFAFNEEFSAPLYRIKVNAIQMKETIEENTSTTERVFQDRQYQIDAAIVRIMKTRKILSHTLLITELFQQLKFPIKPTDLKKRIESLIDREYLERDKNNPQIYNYLA 388
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BLAST of mRNA_E-fasciculatus_F_contig10922.739.1 vs. uniprot
Match: A0A7S4D7J7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D7J7_HETAK)

HSP 1 Score: 310 bits (795), Expect = 3.140e-101
Identity = 157/234 (67.09%), Postives = 184/234 (78.63%), Query Frame = 1 
Query:    7 QVLTTGYWPGYPAMEVGMPDEMKEHVECFKCYYQNKYQGRRLVWQPVLGQCILKVAFPKGRKELAVSQLQTLVLWCFSTVDEVSFADVKAKTAIEDGELRRTLQSLACGKVRVLHKEPRGREVNDGDKFLFNKEFTAKLHRIRINSIQLKETSEENEKTHEAVFRDRQYQVDAAIVRIMKARKNLAHTMLMSELFSQVKFPATPVDLKKRIESLIERDYLERDPNKPGDYRYLA 708
            QVLTTGYWP YP ME+ +P E+  + E F+ YY NKYQGRR+ WQ  LGQCI+K    + +KEL+VSQLQT+VL  F+  + + + ++  +T IE GELRRTLQSLACGK RVL KEP+G+EV D D F  N+EFT KL+RIRIN+IQLKET EENEKTHEAVFRDRQYQVDAAIVRIMK+RK L HT LM EL SQ+KFPA PVDLKKRIESLIER+YLERD +    Y YLA
Sbjct:  230 QVLTTGYWPTYPPMELRLPPEIVFYQERFRNYYTNKYQGRRIEWQHFLGQCIVKANCFQKKKELSVSQLQTMVLVLFNEANSLIYKEILEQTGIEAGELRRTLQSLACGKARVLRKEPKGKEVADDDAFTINQEFTHKLYRIRINTIQLKETVEENEKTHEAVFRDRQYQVDAAIVRIMKSRKTLGHTQLMGELMSQLKFPAKPVDLKKRIESLIEREYLERDEDDSSRYNYLA 463
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BLAST of mRNA_E-fasciculatus_F_contig10922.739.1 vs. uniprot
Match: A0A7J7LJH5_9MAGN (CULLIN_2 domain-containing protein n=4 Tax=Mesangiospermae TaxID=1437183 RepID=A0A7J7LJH5_9MAGN)

HSP 1 Score: 308 bits (788), Expect = 8.380e-101
Identity = 151/235 (64.26%), Postives = 185/235 (78.72%), Query Frame = 1 
Query:    4 VQVLTTGYWPGYPAMEVGMPDEMKEHVECFKCYYQNKYQGRRLVWQPVLGQCILKVAFPKGRKELAVSQLQTLVLWCFSTVDEVSFADVKAKTAIEDGELRRTLQSLACGKVRVLHKEPRGREVNDGDKFLFNKEFTAKLHRIRINSIQLKETSEENEKTHEAVFRDRQYQVDAAIVRIMKARKNLAHTMLMSELFSQVKFPATPVDLKKRIESLIERDYLERDPNKPGDYRYLA 708
            V VLTTGYWP YP M++ +P E+  + + FK +Y +KY GRRL+WQ  LG C+LKV FPKGRKELAVS  QT+VL  F+   ++SF D+K  T IED ELRRTLQSLACGKVRVL K P+GREV D D F+FN++F+A L+RI++N+IQ+KET EEN  T E VF+DRQYQVDAAIVRIMK RK L+HT+L++ELF Q+KFP  P DLKKRIESLI+R+YLERD + P  Y YLA
Sbjct:  181 VHVLTTGYWPTYPPMDMQLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHCVLKVEFPKGRKELAVSLFQTVVLMLFNDAQKLSFQDIKDSTGIEDKELRRTLQSLACGKVRVLQKFPKGREVGDIDSFVFNEDFSAPLYRIKVNAIQMKETVEENTNTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKSNPQIYNYLA 415
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BLAST of mRNA_E-fasciculatus_F_contig10922.739.1 vs. uniprot
Match: A0A6V7NMR6_ANACO (CULLIN_2 domain-containing protein n=2 Tax=Mesangiospermae TaxID=1437183 RepID=A0A6V7NMR6_ANACO)

HSP 1 Score: 309 bits (792), Expect = 1.860e-100
Identity = 151/235 (64.26%), Postives = 185/235 (78.72%), Query Frame = 1 
Query:    4 VQVLTTGYWPGYPAMEVGMPDEMKEHVECFKCYYQNKYQGRRLVWQPVLGQCILKVAFPKGRKELAVSQLQTLVLWCFSTVDEVSFADVKAKTAIEDGELRRTLQSLACGKVRVLHKEPRGREVNDGDKFLFNKEFTAKLHRIRINSIQLKETSEENEKTHEAVFRDRQYQVDAAIVRIMKARKNLAHTMLMSELFSQVKFPATPVDLKKRIESLIERDYLERDPNKPGDYRYLA 708
            V VLTTGYWP YP M+V +P E+  + + FK +Y +KY GRRL+WQ  LG C+LK  FPKG+KELAVS  QT+VL  F+   ++SF D+K  T IED ELRRTLQSLACGKVRVL K P+GR+V+D D F+FN+EF+A L+RI++N+IQ+KET EEN  T E VF+DRQYQVDAAIVRIMK RK L+HT+L++ELF Q+KFP  P DLKKRIESLI+R+YLERD N P  Y YLA
Sbjct:  254 VHVLTTGYWPTYPPMDVRLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHCVLKAEFPKGKKELAVSLFQTVVLMLFNDAQKLSFQDIKDSTGIEDKELRRTLQSLACGKVRVLQKIPKGRDVDDEDSFVFNEEFSAPLYRIKVNAIQMKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIYNYLA 488
[Close]
BLAST of mRNA_E-fasciculatus_F_contig10922.739.1 vs. uniprot
Match: A0A7S3XVG8_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XVG8_HETAK)

HSP 1 Score: 310 bits (795), Expect = 2.650e-100
Identity = 157/234 (67.09%), Postives = 184/234 (78.63%), Query Frame = 1 
Query:    7 QVLTTGYWPGYPAMEVGMPDEMKEHVECFKCYYQNKYQGRRLVWQPVLGQCILKVAFPKGRKELAVSQLQTLVLWCFSTVDEVSFADVKAKTAIEDGELRRTLQSLACGKVRVLHKEPRGREVNDGDKFLFNKEFTAKLHRIRINSIQLKETSEENEKTHEAVFRDRQYQVDAAIVRIMKARKNLAHTMLMSELFSQVKFPATPVDLKKRIESLIERDYLERDPNKPGDYRYLA 708
            QVLTTGYWP YP ME+ +P E+  + E F+ YY NKYQGRR+ WQ  LGQCI+K    + +KEL+VSQLQT+VL  F+  + + + ++  +T IE GELRRTLQSLACGK RVL KEP+G+EV D D F  N+EFT KL+RIRIN+IQLKET EENEKTHEAVFRDRQYQVDAAIVRIMK+RK L HT LM EL SQ+KFPA PVDLKKRIESLIER+YLERD +    Y YLA
Sbjct:  304 QVLTTGYWPTYPPMELRLPPEIVFYQERFRNYYTNKYQGRRIEWQHFLGQCIVKANCFQKKKELSVSQLQTMVLVLFNEANSLIYKEILEQTGIEAGELRRTLQSLACGKARVLRKEPKGKEVADDDAFTINQEFTHKLYRIRINTIQLKETVEENEKTHEAVFRDRQYQVDAAIVRIMKSRKTLGHTQLMGELMSQLKFPAKPVDLKKRIESLIEREYLERDEDDSSRYNYLA 537
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10922.739.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K1D7_9PHAE1.050e-16799.15CULLIN_2 domain-containing protein n=1 Tax=Ectocar... [more]
D7FQS5_ECTSI6.440e-16197.46CULLIN_2 domain-containing protein n=1 Tax=Ectocar... [more]
A0A835ZG50_9STRA2.800e-10370.04Cullin family-domain-containing protein n=1 Tax=Tr... [more]
A0A6A4KY20_9ERIC2.460e-10264.68CULLIN_2 domain-containing protein (Fragment) n=1 ... [more]
A0A371G0R6_MUCPR2.910e-10264.68Cullin-4 (Fragment) n=2 Tax=Fabaceae TaxID=3803 Re... [more]
A0A5P1EGZ3_ASPOF2.550e-10164.26CULLIN_2 domain-containing protein n=1 Tax=Asparag... [more]
A0A7S4D7J7_HETAK3.140e-10167.09Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7J7LJH5_9MAGN8.380e-10164.26CULLIN_2 domain-containing protein n=4 Tax=Mesangi... [more]
A0A6V7NMR6_ANACO1.860e-10064.26CULLIN_2 domain-containing protein n=2 Tax=Mesangi... [more]
A0A7S3XVG8_HETAK2.650e-10067.09Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10922contigE-fasciculatus_F_contig10922:27..3890 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score472.2
Seed ortholog evalue1.4e-130
Seed eggNOG ortholog2880.D7FQS5
KEGG koko:K10609
KEGG Pathwayko03420,ko04120,map03420,map04120
KEGG ModuleM00385,M00386
GOsGO:0000151,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006950,GO:0006974,GO:0008150,GO:0009987,GO:0019899,GO:0031461,GO:0031625,GO:0032991,GO:0033554,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044389,GO:0044424,GO:0044464,GO:0050896,GO:0051716,GO:0080008,GO:1902494,GO:1990234
EggNOG free text desc.ubiquitin protein ligase binding
EggNOG OGsCOG5647@1,KOG2167@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03400,ko04121,ko04147
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionWinged helix-turn-helix DNA-binding domain
Ec32 orthologEc-01_000330.1
Exons5
Model size711
Cds size711
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10922.739.1prot_E-fasciculatus_F_contig10922.739.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig10922 27..3890 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927592.7322717-CDS-E-fasciculatus_F_contig10922:26..2211622927592.7322717-CDS-E-fasciculatus_F_contig10922:26..221Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10922 27..221 -
1695995611.1576276-CDS-E-fasciculatus_F_contig10922:26..2211695995611.1576276-CDS-E-fasciculatus_F_contig10922:26..221Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10922 27..221 -
1622927592.7455862-CDS-E-fasciculatus_F_contig10922:1829..20091622927592.7455862-CDS-E-fasciculatus_F_contig10922:1829..2009Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10922 1830..2009 -
1695995611.174944-CDS-E-fasciculatus_F_contig10922:1829..20091695995611.174944-CDS-E-fasciculatus_F_contig10922:1829..2009Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10922 1830..2009 -
1622927592.7614524-CDS-E-fasciculatus_F_contig10922:2477..25971622927592.7614524-CDS-E-fasciculatus_F_contig10922:2477..2597Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10922 2478..2597 -
1695995611.1906404-CDS-E-fasciculatus_F_contig10922:2477..25971695995611.1906404-CDS-E-fasciculatus_F_contig10922:2477..2597Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10922 2478..2597 -
1622927592.772857-CDS-E-fasciculatus_F_contig10922:2951..30721622927592.772857-CDS-E-fasciculatus_F_contig10922:2951..3072Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10922 2952..3072 -
1695995611.2020552-CDS-E-fasciculatus_F_contig10922:2951..30721695995611.2020552-CDS-E-fasciculatus_F_contig10922:2951..3072Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10922 2952..3072 -
1622927592.7866726-CDS-E-fasciculatus_F_contig10922:3795..38901622927592.7866726-CDS-E-fasciculatus_F_contig10922:3795..3890Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10922 3796..3890 -
1695995611.2210832-CDS-E-fasciculatus_F_contig10922:3795..38901695995611.2210832-CDS-E-fasciculatus_F_contig10922:3795..3890Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10922 3796..3890 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig10922.739.1

>prot_E-fasciculatus_F_contig10922.739.1 ID=prot_E-fasciculatus_F_contig10922.739.1|Name=mRNA_E-fasciculatus_F_contig10922.739.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=237bp
HVQVLTTGYWPGYPAMEVGMPDEMKEHVECFKCYYQNKYQGRRLVWQPVL
GQCILKVAFPKGRKELAVSQLQTLVLWCFSTVDEVSFADVKAKTAIEDGE
LRRTLQSLACGKVRVLHKEPRGREVNDGDKFLFNKEFTAKLHRIRINSIQ
LKETSEENEKTHEAVFRDRQYQVDAAIVRIMKARKNLAHTMLMSELFSQV
KFPATPVDLKKRIESLIERDYLERDPNKPGDYRYLA*
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mRNA from alignment at E-fasciculatus_F_contig10922:27..3890-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig10922.739.1 ID=mRNA_E-fasciculatus_F_contig10922.739.1|Name=mRNA_E-fasciculatus_F_contig10922.739.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3864bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10922:27..3890- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CATGTTCAGGTATTGACAACCGGGTACTGGCCGGGGTACCCCGCTATGGA
GGTGGGCATGCCGGACGAGATGAAGGAGCACGTGGAATGCTTCAAGTGAG
TTTTTGTCGTCAGCAAAGCCGTTATTTTTGGAACATGCACGCCGTGCAAG
GTGCCCAAAGCGCATTTTTTGAATGGAGTATGCATGCCATACAGTACAAT
GTGCCGAAAAACGCACGGCTAATGCTAATGCACTACTGTATCCCCTCTAT
AGGTGTGCACTACGCGCTCACGTTTTAGGCTTTTAACTCTTCATACTCTT
TAATAGTATCTAGCAAACCCGCTGTGTTTGTGGGAAGATGATGTCTTGTT
TATATAGGTGACTTCGCAAAGTAAACTTCTTGGAGATTTTAACTGTGAAC
CTTGTGTGGGAGAACGGAGCCCGGCTGCACGAGTGGGAGGAGAAAAACAC
CTTAGCTTATGCCAGAATAGGAAATTTATCGCAAGTGCGGATTTGTGGAA
ATCCGGTAAACACAATATAGTAGCAGGGCGAAACCGTTTGCGGTTGGAGT
GACAGACTAATGTGTTTGTCACAGCCGCGGACAGGCCACTGAGTGCTCGG
CTTTATTATCAACTTCGATTTCGAGATAACCCTACGACGACATGTACCAG
TACAGCAGGTTCGACGTCAGGTTCCATGCCAATTTCGGCGCGGCAGTCAT
GACGTCATGGTCCGTGTCCCGAAACGGCACAGAACGGTCCAATGCGGCAC
GAAAACGACATGAAGACATGAAAACACACGATACGATATGATACGAAACG
GCATGAAACCGACCGCAGGTGCTACTACCAGAACAAGTACCAGGGCCGGC
GGCTTGTGTGGCAACCGGTGTTGGGCCAGTGCATCTTGAAGGTGGCCTTC
CCCAAGGGGCGCAAGGAGCTCGCGGTGTCACAGCTTCAGGTGATGGTTCA
TATTAGGGTGCAGTTACGCGTCGAACGCATTCTGTGGTCATAGGCCATGT
ACGAGTGCGGTCCACCACCATTATGATGGTATTATACTGTAGTAGTAAAA
TACCTCTTTGCGGTGCTTGCTCGCGTTCTCTCCCCTTCCTTCCCTGGTAG
GTCTTTGATTCATCAACCCGATATTCATTCATGGAGTATCCGCGATTCAT
TCATTTCAGCTTTTTTTGTTTTGTCTTCCTAATGTAACACAACGAGTCCA
TCTCTATCAGAGAAAAGAGTTTTTCGGTTATTCGCCTTCATTGCGTGCTG
ACGCGGGTGGGTAAATTGATTGGTCGCGTCTCGCCGAAATCAGACTCTGG
TCCTGTGGTGCTTCAGCACGGTCGACGAGGTGTCTTTCGCGGACGTGAAG
GCCAAGACTGCCATCGAAGACGGCGAGCTACGGAGAACACTTCAGTCGCT
CGCCTGCGGGAAGGTGATTGACTGTCATACATACTTTGTGTCCAGGTTCA
GGCTGTGGGGTTTGCTTCGTGAATGATATGGCCAGCCAACTCTGCGCGCA
GCCTCTTGTTATTCCGATTCGTATTGAAAGGATTCTTATTCCTCATTGCT
GGTGTGGAGCCGAAGGGGTGACGCACGATCGACAGTGATGAGGTAGGTCC
TGCCTATTCATTTTTTTTCTTCATCTCTTGTCTTTCGTCGCTAGAGGTTG
GGCTGATGTTCCGTTTCGCAAGGACGGGCAAGATCCACACAAGCATGACC
CCCCCAAGATATCGACGTCGGAGACAAGTTTACGGTACACAGCGGGTACT
GTACCCATCCGCATTTTATTTCGTACTTGAAAGTTGCTTTTGTTTTGGCG
CTTTGTTTGGTCGTGTTTCGTATTGCTTGCCGTGAAACTCAGTACGGTGG
TATATCTCGTTTGGCCCCTGTGTGTGCATAGGTGAGGGTGCTTCACAAGG
AGCCGAGGGGGCGAGAGGTGAACGACGGCGATAAGTTCCTGTTCAACAAG
GAGTTCACGGCGAAGCTGCACCGCATCAGGATCAACAGCATCCAGCTCAA
GGAGACTTCGGAGGAAAACGAAAAGACACACGAGGCTGTGTTCAGAGACC
GACAATACCAGGTCAGGACAAGGATAAGGAGACAAAATCTGTGTGTTTCA
TCCCGTCCATTTTGGGCGCCAGGCTACATCTTTCCGTGTGTTTTTGACGT
ATCAAGACAGGCACATGTGTGTGTTTTTTATTATGTACTAGCGCCGGCCG
CGCTACATAGCCAAGACGTTCCTCAGTGTCCTCATGCGACTGAAACAGAT
AACGCTGTTAATAAAGATACTTGTCGCGTGACCTTGGCCCCCGTGAGGGG
ATGTCGTGGTGGAGGCTTGAGTACTCTCCATATAGGTGTCGTGTCGTGCA
GTCTGTTCTGGCGCCAGTCTACTGAGTACATCTTACATCTTCCGGTATAT
ATATTTGACGTATCAGGCGGGGTCGTTAGTCGCACGCACCGGAGGAAGGT
AGATAGCACGGGAATGTGTTGCCTTTGCCCAACCTCCTTCTCCCCTGAGG
CGCTCTGCTGCCTTCTTCGATGTTCATCGCGAGGCGAGTTCAGCAGCCAC
CTGCTCGCTCTCCACAGAAGAGTTGAAATTTTTCGTTCACTCCCTAGACA
CATCCGAACCCTATGGTTTACGAGATGTATAACTACTAGACCAATCGGGG
CGACCGGCTTTATTGTGCAGAAAATATAATATGCCAACAAGCAACACGCA
ACACCCTCAGGGTGTAGATCATGTGTCATGTGTTCGTGCATCGTACCAAT
GAGCTGTGTTGGAAGCATCGATAGCATCGATAGCATCGGTAGCACCGATA
GCATCGATAGCATCGATAGCATCGATAGCACCGATAGCACCGATAGCATC
GGTAGCACCGATAGCATCGATAGCACCGATAGCATCGATAGCAACGGTAG
CACCGATAGCATCGATAGCACCGGTAGCACCGATAGCACCGATAGCATCG
ATGAGCAGGGTGGTGCCGATAGCACCGATAGCATCGATAGCATCGATAGC
ACCGATGAGCGGGGTGGTGCCGATCTTGGGTCAAGAAGGTTCACTGTAGA
GCTCGGTGCAAGCTCACACCCTCTCGCGTTCCGCGTACTTGAATCCCATC
CCATCCCATCTCATCCCATCCGAGCGGCCGGCAGCGGAATTCGAGAGAAA
ACGAAAACGAAACCATTTCTCTCAAAAGCACCGCGCTAACCTTAGATATT
GTAGCACCGTTCTTTCATTCTTTCTTTCTTTGGACACACACCGAGCGTTT
CGTTTTCGTTTCCTCTCGATTCCGATTCCGATTCCGATTCCGATTCCGAT
TCCGGCCGCTCGGATGGGGTGGGCTGGGCTGGGATGGGATTTTAAATACG
CGGAACGGGACAAGGTGTGTGCTTGCACCGAGCTCTACCGTGAAAGCACC
GTGTCAAAGGAATAGGAATCATCACATCACATCTCTAGTCTCGGTTATCG
GACCAGCGATGGAGGTCCTCCACCCGCTCTCTCTCTCCCACGTTGCAAAT
TTCGATCGCGACATGAATTATTTTCCAGTTCCAAACACTACCTGATGGGT
GCTGTCAACACTCCACCAATAATTTACGACCTTTCCATCCCATGCAGCGT
CATGTATTTTCTGAAAACCTCACTCCCTGTCCTCCGACGGCACCGAAACG
GGTTCGTTCGTGTACACAGGTGGACGCTGCGATCGTGCGCATCATGAAGG
CGCGTAAAAACCTGGCGCACACGATGCTCATGAGCGAGCTCTTTTCACAG
GTGAAGTTCCCTGCCACGCCTGTGGACCTCAAGAAGAGGATAGAGTCCCT
GATAGAGCGCGACTACCTTGAGAGAGACCCCAACAAGCCCGGGGACTACC
GGTACCTCGCATGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10922:27..3890-

>mRNA_E-fasciculatus_F_contig10922.739.1 ID=mRNA_E-fasciculatus_F_contig10922.739.1|Name=mRNA_E-fasciculatus_F_contig10922.739.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1422bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10922:27..3890- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CATGTTCAGGTATTGACAACCGGGTACTGGCCGGGGTACCCCGCTATGGA
GGTGGGCATGCCGGACGAGATGAAGGAGCACGTGGAATGCTTCAACATGT
TCAGGTATTGACAACCGGGTACTGGCCGGGGTACCCCGCTATGGAGGTGG
GCATGCCGGACGAGATGAAGGAGCACGTGGAATGCTTCAAGTGCTACTAC
CAGAACAAGTACCAGGGCCGGCGGCTTGTGTGGCAACCGGTGTTGGGCCA
GTGCATCTTGAAGGTGGCCTTCCCCAAGGGGCGCAAGGAGCTCGCGGTGT
CACAGCTTCAGGTGCTACTACCAGAACAAGTACCAGGGCCGGCGGCTTGT
GTGGCAACCGGTGTTGGGCCAGTGCATCTTGAAGGTGGCCTTCCCCAAGG
GGCGCAAGGAGCTCGCGGTGTCACAGCTTCAGACTCTGGTCCTGTGGTGC
TTCAGCACGGTCGACGAGGTGTCTTTCGCGGACGTGAAGGCCAAGACTGC
CATCGAAGACGGCGAGCTACGGAGAACACTTCAGTCGCTCGCCTGCGGGA
AGACTCTGGTCCTGTGGTGCTTCAGCACGGTCGACGAGGTGTCTTTCGCG
GACGTGAAGGCCAAGACTGCCATCGAAGACGGCGAGCTACGGAGAACACT
TCAGTCGCTCGCCTGCGGGAAGGTGAGGGTGCTTCACAAGGAGCCGAGGG
GGCGAGAGGTGAACGACGGCGATAAGTTCCTGTTCAACAAGGAGTTCACG
GCGAAGCTGCACCGCATCAGGATCAACAGCATCCAGCTCAAGGAGACTTC
GGAGGAAAACGAAAAGACACACGAGGCTGTGTTCAGAGACCGACAATACC
AGGTGAGGGTGCTTCACAAGGAGCCGAGGGGGCGAGAGGTGAACGACGGC
GATAAGTTCCTGTTCAACAAGGAGTTCACGGCGAAGCTGCACCGCATCAG
GATCAACAGCATCCAGCTCAAGGAGACTTCGGAGGAAAACGAAAAGACAC
ACGAGGCTGTGTTCAGAGACCGACAATACCAGGTGGACGCTGCGATCGTG
CGCATCATGAAGGCGCGTAAAAACCTGGCGCACACGATGCTCATGAGCGA
GCTCTTTTCACAGGTGAAGTTCCCTGCCACGCCTGTGGACCTCAAGAAGA
GGATAGAGTCCCTGATAGAGCGCGACTACCTTGAGAGAGACCCCAACAAG
CCCGGGGACTACCGGTACCTCGCATGAGTGGACGCTGCGATCGTGCGCAT
CATGAAGGCGCGTAAAAACCTGGCGCACACGATGCTCATGAGCGAGCTCT
TTTCACAGGTGAAGTTCCCTGCCACGCCTGTGGACCTCAAGAAGAGGATA
GAGTCCCTGATAGAGCGCGACTACCTTGAGAGAGACCCCAACAAGCCCGG
GGACTACCGGTACCTCGCATGA
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