mRNA_E-fasciculatus_F_contig1092.738.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1092.738.1 vs. uniprot
Match: A0A6H5J5V9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J5V9_9PHAE) HSP 1 Score: 755 bits (1949), Expect = 2.550e-269 Identity = 410/494 (83.00%), Postives = 426/494 (86.23%), Query Frame = 3
Query: 3 GGSRACEGNVGLIAATASRWEGDGDELDGGNGGKDRRRQAEGRKPLRAPWEDIQWSNPSNPSSSSRRVARGGERVAWKDAEDXXXXXXXXXXGLEDGDGDGSRGMVQPREYTRGYEDADFDNRPRRRRSRDGIDAEPVPTGWDTAQWFSGAQEANQGGLYNWARSFYNTLFWYGGASSEEEDELPAMNFQDLLERFDLPAGEQSSARPRPIVPPEELSAEQDFRWRPRGRDATAGATTAAAEGTNRSRTKGRSSAVSGGATGSSRRRAXXXXXXXXXDWENAGRAEREMRAAGGRGRREGGDDGDVVAIGQLRRKQRQLAEREHKCEVDLEKVRDRLDVVDATVELWMRRSAGMLSRGGSETDTDVLQAKRRIYGLKDEGRQLDSATVELEGRLEDCRAKLDRIVQELDFLGEAAIPRAFYTPDDEGDVEKMPEAETVEAGIQAGGGGV----NTSTTKSSGGDTQVVEMGGLGLKAESKRATEAVPAVTEADT 1472
GGSRAC G+VGLIAATASRW DGDELDGGN GKDRRR+AE RKPLRAPWEDIQWSNPSNPSS RR ARGGERVAWKD +D GLEDG SR MVQPR YTR Y+DAD D RPRRRRSRD IDAEPVPTGWDTAQWF+GAQEANQGGLY WARSFYNTLFWYGGASSE EDELPAMNFQDLLERFDLPAGEQSSARPRPIVPPE+L+AEQDFRWRP GR+AT GAT A AE TN SR KGR S SGGATGSSRRRA DWE+ GRAEREM AAGGRGRREGGDDGDVVAIGQLRRKQRQLAEREHKCEVDLEKVRDRLDVVDATVELWMRRSAGMLSRGGSETDTDVLQAKRRIYGLK+EGRQLDSATVELEGRLEDCRAKLDRIVQEL+FLGEAA+PRAFYTP EGD E + +AETVEAGIQAGGGGV N S T SG DT+VVE+GGLGL AESKR TEAVPAVTEADT
Sbjct: 67 GGSRACGGDVGLIAATASRWGADGDELDGGNDGKDRRRRAERRKPLRAPWEDIQWSNPSNPSS--RRAARGGERVAWKDVDDEEEEEEML--GLEDG----SRSMVQPRGYTRSYDDADVDTRPRRRRSRDDIDAEPVPTGWDTAQWFTGAQEANQGGLYEWARSFYNTLFWYGGASSEGEDELPAMNFQDLLERFDLPAGEQSSARPRPIVPPEDLAAEQDFRWRPSGREATGGAT-ATAESTNWSRAKGRGSTASGGATGSSRRRARRERDERDLDWESVGRAEREMHAAGGRGRREGGDDGDVVAIGQLRRKQRQLAEREHKCEVDLEKVRDRLDVVDATVELWMRRSAGMLSRGGSETDTDVLQAKRRIYGLKEEGRQLDSATVELEGRLEDCRAKLDRIVQELEFLGEAAMPRAFYTPG-EGDDEIVAKAETVEAGIQAGGGGVKGDVNPSMTTPSGDDTKVVEIGGLGLNAESKRPTEAVPAVTEADT 550
BLAST of mRNA_E-fasciculatus_F_contig1092.738.1 vs. uniprot
Match: D8LRJ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRJ5_ECTSI) HSP 1 Score: 464 bits (1193), Expect = 7.950e-159 Identity = 244/282 (86.52%), Postives = 253/282 (89.72%), Query Frame = 3
Query: 279 GLEDGDGDGSRGMVQPREYTRGYEDADFDNRPRRRRSRDGIDAEPVPTGWDTAQWFSGAQEANQGGLYNWARSFYNTLFWYGGASSEEEDELPAMNFQDLLERFDLPAGEQSSARPRPIVPPEELSAEQDFRWRPRGRDATAGATTAAAEGTNRSRTKGRSSAVSGGATGSSRRRAXXXXXXXXXDWENAGRAEREMRAAGGRGRREGGDDGDVVAIGQLRRKQRQLAEREHKCEVDLEKVRDRLDVVDATVELWMRRSAGMLSRGGSETDTDVLQAKRRIY 1124
GLEDG SRGMVQPREYTRGY+DADFD RPRRRRSRDGIDAEPVPTGWDTAQWFSGAQEANQGGLY WARSFYNTLFWYGGASSE+EDELPAMNFQDLLERFDLPAGEQSS RPRPIVPPE+L+AEQDF W+P GR+AT GAT AAAEGTNRSR+K R S VSGGAT S+RRRA DWEN GRAEREMRAAGGRGRREG DDGDVVAIGQLRRKQRQLAEREHKCEVDLEKVRDRLDVVDATVELWMRRSAGMLSRGGSETDTDVLQ RR +
Sbjct: 3 GLEDG----SRGMVQPREYTRGYDDADFDTRPRRRRSRDGIDAEPVPTGWDTAQWFSGAQEANQGGLYEWARSFYNTLFWYGGASSEDEDELPAMNFQDLLERFDLPAGEQSSTRPRPIVPPEDLAAEQDFLWQPSGREATGGAT-AAAEGTNRSRSKDRGSTVSGGATRSTRRRARREREERDLDWENVGRAEREMRAAGGRGRREGRDDGDVVAIGQLRRKQRQLAEREHKCEVDLEKVRDRLDVVDATVELWMRRSAGMLSRGGSETDTDVLQTMRRDH 279
BLAST of mRNA_E-fasciculatus_F_contig1092.738.1 vs. uniprot
Match: A0A836C9G9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9G9_9STRA) HSP 1 Score: 99.0 bits (245), Expect = 4.950e-19 Identity = 94/275 (34.18%), Postives = 131/275 (47.64%), Query Frame = 3
Query: 474 GLYNWARSFYNTLFWYGGASSEEEDELPAMNFQDLLERFDLPAGEQSSARPR------PI---------------VPPEELSAEQD--FRWRPRGRDATAGATTAAAEGTNRSRTKGRSSAVSGGATGSSRRRAXXXXXXXXXDWENAGRAEREMRAAGGRGRREGGDDGDVVAIGQLRRKQRQLAEREHKCEVDLEKVRDRLDVVDATVELWMRRSAGMLSR----GGSETDTDVLQAKRRIYGLKDEGRQLDSATVELEGRLEDCRAKLDRIV 1217
G W R FYN LFWYG A+ +++D LPAM+F+DL+E+++ G++ AR R P+ VPP E + D FRW P G +R R R+S RRA XXXXXXXX LRR+ R L + DL KV +RL V+D T+ELW+RR + +R GG++ +++ AKRR+Y L+D+GR L++A VEL GRLE+ A L R++
Sbjct: 2 GFMRWLRGFYNALFWYG-AAFDDDDSLPAMDFKDLMEQYET-EGDRRRARQRKGAAEAPLSGGRRAAGDRQVEYRVPPTEYQNDSDWKFRWNPGG---------------DRDRAPKRTSTQPD-------RRAPXXXXXXXXXXXXXXXXXXXXXXXXXX------XXXXXXXXXXLRRRARDLTAKRAALRRDLAKVDERLSVLDTTLELWLRRGRALAARRRPPGGADA-AELVSAKRRVYKLRDDGRALEAARVELAGRLENASANLARVL 245
BLAST of mRNA_E-fasciculatus_F_contig1092.738.1 vs. uniprot
Match: D8LRJ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRJ4_ECTSI) HSP 1 Score: 54.7 bits (130), Expect = 7.300e-6 Identity = 36/56 (64.29%), Postives = 36/56 (64.29%), Query Frame = -3
Query: 2 MSSQGARKGFLPSACRLRSLPPLPPSSSSPSPS---QRLAVAAIKPTFPSQALLPP 160
MSS GAR GFL S CRLRSLPP QRLAVAAIKPT P QALLPP
Sbjct: 1 MSSHGARNGFLRSPCRLRSLPPFXXXXXXXXXXXXXQRLAVAAIKPTSPPQALLPP 56 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1092.738.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1092.738.1 >prot_E-fasciculatus_F_contig1092.738.1 ID=prot_E-fasciculatus_F_contig1092.738.1|Name=mRNA_E-fasciculatus_F_contig1092.738.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=401bp MLGLEDGDGDGSRGMVQPREYTRGYEDADFDNRPRRRRSRDGIDAEPVPTback to top mRNA from alignment at E-fasciculatus_F_contig1092:9011..14668+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1092.738.1 ID=mRNA_E-fasciculatus_F_contig1092.738.1|Name=mRNA_E-fasciculatus_F_contig1092.738.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=5658bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1092:9011..14668+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1092:9011..14668+ >mRNA_E-fasciculatus_F_contig1092.738.1 ID=mRNA_E-fasciculatus_F_contig1092.738.1|Name=mRNA_E-fasciculatus_F_contig1092.738.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2406bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1092:9011..14668+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |