|
|
Homology
BLAST of mRNA_E-fasciculatus_F_contig10918.736.1 vs. uniprot
Match: D7G2U2_ECTSI (UBA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2U2_ECTSI) HSP 1 Score: 377 bits (968), Expect = 4.430e-118 Identity = 287/368 (77.99%), Postives = 295/368 (80.16%), Query Frame = 1
Query: 1 SQLLVRMERRGPPLRRLLEACSYIFRSALEMAAGPPDGSSAPASPTSPFKGGVVEEEGGEDAGGV--------KRPAAATATAGSQQGWEAFNRSMDDRDEEVLKAVAXXXXXXXXGEKVKERELPAPMLEVLKVALSLLRRLSNRNLTAAGPFASTMQMWPSGHPQEEKGETDPERNDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----AMSPPQPQAPGAPTPMAXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAADSTPVAGR--NQSSQVRQGLGIAKAIRRLLSQQDGGKAKANTPPPRFSSDLFIRRVHLLVGEVLEPLWRDPRLASLPPEAASRVLATVLELLQSLQ 1059
+ LLVRMERRGPPLRRLLEACSYIF SALEMAAGPPDGSSAPASPTSPFKGGVVE E GE AGGV + AAA A +GSQQGWEAFNRSMDDRDEEV KAV XXXXXXXXGEKVKERELPAPMLEVLKVALSLLRRLSNRNLTAAGPFASTMQMWPSGHPQEEKGE DPERND XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX MSPPQPQAPG PTPMA XXXX XX XXXXX +QSS++ + G + L S QDGGKAK N PPPRFSSDLFIRRVHLL GEVLEPLWRDPRLASLPPEAASRVLATVLELLQSLQ
Sbjct: 412 ANLLVRMERRGPPLRRLLEACSYIFSSALEMAAGPPDGSSAPASPTSPFKGGVVEGE-GEGAGGVTAAVHGDNRATAAAAAVSGSQQGWEAFNRSMDDRDEEVRKAVXXXXXXXXXGEKVKERELPAPMLEVLKVALSLLRRLSNRNLTAAGPFASTMQMWPSGHPQEEKGEIDPERNDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSGTMSPPQPQAPGTPTPMAVAXXXXVEPPSTPDXXSRAAGARXXXXXXXXXXXXXXXXXXXSQSSKISRAPG-GPGGKWLTSPQDGGKAKTNAPPPRFSSDLFIRRVHLLAGEVLEPLWRDPRLASLPPEAASRVLATVLELLQSLQ 777
BLAST of mRNA_E-fasciculatus_F_contig10918.736.1 vs. uniprot
Match: A0A6H5L5C5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5C5_9PHAE) HSP 1 Score: 215 bits (547), Expect = 3.400e-63 Identity = 123/159 (77.36%), Postives = 126/159 (79.25%), Query Frame = 1
Query: 19 MERRGPPLRRLLEACSYIFRSALEMAAGPPDGSSAPASPTSPFKGGVVEEEGGEDAGGVKRP------AAATATAGSQQGWEAFNRSMDDRDEEVLKAVAXXXXXXXXGEKVKERELPAPMLEVLKVALSLLRRLSNRNLTAAGPFASTMQMWPSGHPQ 477
MERR PLR LL ACSYIF SALEM AGPPDGSSAPASPTSPFKGGVV EE G++ GGV A A A +G QQGWEAFNRSMD RDEEV KA A GEKVKERELPAPMLEVLKVALSLLRRLSNRNLTAAGPFASTMQMWPSGHPQ
Sbjct: 1 MERREHPLRSLLGACSYIFNSALEMTAGPPDGSSAPASPTSPFKGGVVGEE-GQNYGGVTAAICGDNRATAAAGSGGQQGWEAFNRSMDGRDEEVRKAAAGAAAG---GEKVKERELPAPMLEVLKVALSLLRRLSNRNLTAAGPFASTMQMWPSGHPQ 155
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 377.9 |
| Seed ortholog evalue | 5.2e-102 |
| Seed eggNOG ortholog | 2880.D7G2U2 |
| EggNOG free text desc. | Ubiquitin associated domain |
| EggNOG OGs | 2D4WP@1,2SWJ7@2759 |
| COG Functional cat. | S |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Model size | 1059 |
| Cds size | 1041 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig10918.736.1 >prot_E-fasciculatus_F_contig10918.736.1 ID=prot_E-fasciculatus_F_contig10918.736.1|Name=mRNA_E-fasciculatus_F_contig10918.736.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=347bp
MERRGPPLRRLLEACSYIFRSALEMAAGPPDGSSAPASPTSPFKGGVVEE
EGGEDAGGVKRPAAATATAGSQQGWEAFNRSMDDRDEEVLKAVAVAAAAA
AGGEKVKERELPAPMLEVLKVALSLLRRLSNRNLTAAGPFASTMQMWPSG
HPQEEKGETDPERNDGGDDGDDNDDDDDGSPPAAGGAAAAGAAAADTTAG
RGGGAMSPPQPQAPGAPTPMAVATPMAVEPPSTPDAPSRGAGARGGSGAA
AAADSTPVAGRNQSSQVRQGLGIAKAIRRLLSQQDGGKAKANTPPPRFSS
DLFIRRVHLLVGEVLEPLWRDPRLASLPPEAASRVLATVLELLQSLQ back to topmRNA from alignment at E-fasciculatus_F_contig10918:730..4628- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig10918.736.1 ID=mRNA_E-fasciculatus_F_contig10918.736.1|Name=mRNA_E-fasciculatus_F_contig10918.736.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3899bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10918:730..4628- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TCTCAGCTCTTGGTGCGTATGGAGCGCAGAGGCCCCCCCCTCCGCCGCCT
CCTCGAGGCCTGCTCCTACATATTCCGCTCCGCCCTCGAGATGGCCGCGG
GGCCCCCCGACGGCTCGTCGGCTCCCGCTAGCCCTACTTCGCCGTTCAAG
GGCGGGGTTGTTGAGGAGGAGGGGGGCGAGGATGCGGGGGGGGTCAAGCG
GCCGGCGGCGGCGACGGCGACGGCGGGCAGTCAGCAAGGCTGGGAGGCGT
TTAACCGGTCGATGGACGACCGCGACGAGGAGGTGCTGAAGGCGGTAGCG
GTAGCGGCGGCGGCGGCGGCGGGAGGGGAGAAGGTGAAGGAGCGGGAGCT
GCCGGCCCCGATGCTGGAGGTGCTGAAGGTGGCGCTGTCGCTGCTGCGTC
GGCTGTCGAACCGGAACCTGACCGCGGCGGGGCCGTTCGCGTCCACGATG
CAGATGTGGCCGTCGGGGCATCCCCAGGTACTGTACTGTACAGCAGAACT
ACCGTAGGTGACATGACACAAGACATCACACCCCGTGTTGGGGTGATTTT
TCAGAGCTCGATAGCTCTACGGCAGAAAGAAAGAGCGGCGGCGTTAGCAC
ATTTTGGTCGGCAGAAAGAGTGGCGGTGTTGAGAGGGACGGTGTTGGGAT
CGGCGTCGTCTAGAGCTTTCCGAAACCGTATGTATCGCTTGATGCATACC
TGTTCTTTCGCCGTGAACGCAATCGAGCCTCGAACATCGGTCCCGGGGAT
GTGATGTTTATGTTACGTCAACCAATGGCACGCTGCCGAATCGCCGCTTT
CGCGTAGTGTCTTGCTGCGGTGGGTGGGGTGGCCGCTTCGTCGCAAAACG
GCTTAATTTTGCCGCACATTTTGTCGAAGTTTAAATGAAAGAAAATGTAA
AACTAGAACGGAACGGTGTGGACTGCCGTCAATGAACAGACGACAACACA
CGACACACACGTGTCATATGTTAAGGCTTACGGGACAGTGTTAGTATCAA
CTCGTCTTGCCATCACTGCTCAAGACATACTATCGGGGGCGTCAGTCACA
CCACGTGTTCCTTCGCGGCGGGTGTGTTTCAACGCCACTCCACGAATGGG
AGCCGGAGGTTCTCTTTTTCTTCTGTAGCGGCTTTGGTAGTCTCATGGTG
TGTTTTTAGTCTTTTCTTTCAGAGGCGGGTTCGAGTTCCAGCAAGAGCGT
GGTGTAGACGTACTCTAGCACACCTCTTGAAATCTTCATCTTATCTTCCA
TGCAAGCACAGCAGAACGAACGCCTGCTGCTGTTCTTATCCACATGACCA
TCTGACAATCCCCCCCGCTTGGAACACAGCGGCGGGACTGGGAGGCCGCC
CTGGCCATGGCCGGCGAGCCCCCCCCGTCCATCGACGCGTCGTCGTCGTC
GTCGTCGTCGTCGTCTCGTCCGGCGTTGGCACCGGCTTCAGCGTCCGCAG
CATCGGGGGCCCCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGCCGGGG
TCCGCAGGGTCGGGGGCGGCGGCGGCGGCGTCGCGAGGATGGTCAACCTC
GGCAGCAGCAGCGGCGATGGAGGCGGAGATGGCGGCAGCGGCGGCGGCGG
CGGCGGCGACGATCCGCCGGCTCGGCGGCGGCAGGGGCGGCGGCGGCGGT
AGCGGCAGCGGTAGCGGTAGCGGTAGCGGTGGTAGTACCGGCGGCACCGG
CACCGGCGGTGGCGGCGGCGGTGCGGAGGAAGAAAAGGGCGAGACCGACC
CCGAGCGGAACGACGGCGGCGACGACGGCGACGATAACGACGATGACGAT
GACGGAAGCCCGCCGGCGGCCGGAGGCGCAGCAGCAGCAGGGGCGGCGGC
GGCTGATACCACCGCCGGGAGGGGCGGCGGCGCGATGTCACCGCCGCAAC
CGCAGGCGCCGGGGGCTCCGACCCCGATGGCCGTGGCAACGCCGATGGCT
GTTGAGCCGCCGTCGACCCCAGACGCGCCTTCGCGAGGGGCGGGAGCGAG
AGGCGGCAGCGGGGCCGCCGCTGCCGCTGATTCTACGCCTGTGGCAGGCA
GAAATCAGTCGTCGCAGGTGCGTCAGGGTCTCGGGATTGCGAAAGCGATT
CGTCGTCTGCTGTCTGTATTAGCTTTTAGATAGACACAGCGGTCGTTGGT
AGGGGAGGCTGTCCCATGCCTCTCACGGAATCGAATCATTGCAGGAGCGA
AAACGAGGCGTTCCTATGAACACGCACAACGTTATCTTGTGGTAGCCTCG
TGTGAGCAGAACAAAAAGAGGCAAGACATGATGTTTTGAGTCTTGCGAAC
AGCTCACACCTGCAGCAATTCACCCCCCCTGCTGGACGTCTGCAAAGGTT
ATCTAGTGTAGCACGGAATAATGGAAGCCGACATTCCAACACACCAGCTG
AATGCAGACGGTATTGATTTCGGTTTTCCATGTCGGCGCTTCCGTCTCCC
ACCAACCACGGTTCTCCCACAACTGCTGTGAAACAACAAAAGAAGTGGTG
TAAGAAAGAAATGACGAGATGGAGTACTATTATGCATTGGTGTCTGCACC
CAAGTGATGTGTTGGTGTAATATCGGTTTATATTATCCCGTGCTAGTAGA
CGTCCTTGCAACGGTCCAGCAGAGAGGATGAGTGTGATTTCGGGGCGTGA
GAACGGTGCAAGTGTCGTTGACGTGAGAATGGTGGGAGTGTCGTTGACGT
GAGAACGGTGTAAGTGTCGTTGACGTCTTGCGAACAGGCCACACTTGCAA
TAAGCCACAGCAGACAGGTAGGTGCAAGTGTAGCAGGACGGAATCGAACG
TAGAATGCGATAAACCAGCACGTCACTTGGGAGCAGACGACATTGGACGT
AGTTTTCCATCTCTCCTCTTCCATTTTTCCCGCGACTGTTGGGCAGTGGT
GGGAGACGGAAGAGAAAGAATGGCCAACGACAATCAATGTCGTCTGCTCC
CAGGCGATGTGCTGGTTTATTGGATTCTACGACTGATTTTGTCCTGTTAG
ATGTCCTTGGCAAGCGTCCGGCAGAAAGGCATTGTACATTATATGGGGTG
TTTCCTATTTTTAGTTCAGTATTTTTTAGTTTGAGACCACATGGAATTGA
TGGAACAACCATTCATTCCTATTGCGGGTCGGGTCGCGATCCCGCCAGCA
TCTCTCGGGCGCCGGGTGGATCAGGGGGGCAGTGGCTGCCAAGCCCAGGG
GGGTGGCTGGCCTTGGGGCGGAGAGAGAGTAGGATGGGGACAATGAAAGC
AGTAGCTAAGAACACGCTTACACTTAGAGTAGGGGTGTGTGTTTGCTCAC
AGTCGTGCGTGCCGTAGTCGTTAGACCATTGACCTCGCATCCCCACAAAG
CCGGGACGGAGCGATATACCGGTTTTTGGCCGGACCAGACTCTACACATC
ACCAAGCGCGAAGCGCCGTGAGGTTTTCGGCGAGTCGCATGGAGGGTGCG
CTACATCCTGGGTGTGTGTGTGTGATATCAGCGCTTGCGTCAAAGGTCGC
GTGAAAAGGGAGGTGATACGTAGCCGGCGGTACACACCGCCCGCTCGCAG
AGAGGGGGCGCCAAACCTTGACGCTTTTCCCATGCTGTCGTTCCTGCTGG
TCCGCTTCCATACGATCGATTCCCTCAACGCCCGCCCACAAACACCACCG
CCTCCTCCCCCTCTCGCGCGCCACAATAATTCTTCTCGCTCACGGACACA
GAAGCAGCAGGATGGCGGCAAGGCCAAGGCCAACACCCCGCCTCCCCGCT
TCTCGTCGGACCTGTTCATCCGCCGGGTGCACCTCTTGGTCGGGGAGGTG
TTGGAGCCGCTGTGGCGGGACCCGCGGCTGGCTTCGCTGCCGCCGGAGGC
GGCTTCGCGGGTGCTGGCGACGGTGCTGGAGCTCCTGCAGAGCCTCCAG back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig10918:730..4628- >mRNA_E-fasciculatus_F_contig10918.736.1 ID=mRNA_E-fasciculatus_F_contig10918.736.1|Name=mRNA_E-fasciculatus_F_contig10918.736.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2082bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10918:730..4628- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGAGCGCAGAGGCCCCCCCCTCCGCCGCCTCCTCGAGGCCTGCTCCTA
CATATTCCGCTCCGCCCTCGAGATGGCCGCGGGGCCCCCCGACGGCTCGT
CGGCTCCCGCTAGCCCTACTTCGCCGTTCAAGGGCGGGGTTGTTGAGGAG
GAGGGGGGCGAGGATGCGGGGGGGGTCAAGCGGCCGGCGGCGGCGACGGC
GACGGCGGGCAGTCAGCAAGGCTGGGAGGCGTTTAACCGGTCGATGGACG
ACCGCGACGAGGAGGTGCTGAAGGCGGTAGCGGTAGCGGCGGCGGCGGCG
GCGGGAGGGGAGAAGGTGAAGGAGCGGGAGCTGCCGGCCCCGATGCTGGA
GGTGCTGAAGGTGGCGCTGTCGCTGCTGCGTCGGCTGTCGAACCGGAACC
TGACCGCGGCGGGGCCGTTCGCGTCCACGATGCAGATGTGGCCGTCGGGG
CATCCCCAGATGGAGCGCAGAGGCCCCCCCCTCCGCCGCCTCCTCGAGGC
CTGCTCCTACATATTCCGCTCCGCCCTCGAGATGGCCGCGGGGCCCCCCG
ACGGCTCGTCGGCTCCCGCTAGCCCTACTTCGCCGTTCAAGGGCGGGGTT
GTTGAGGAGGAGGGGGGCGAGGATGCGGGGGGGGTCAAGCGGCCGGCGGC
GGCGACGGCGACGGCGGGCAGTCAGCAAGGCTGGGAGGCGTTTAACCGGT
CGATGGACGACCGCGACGAGGAGGTGCTGAAGGCGGTAGCGGTAGCGGCG
GCGGCGGCGGCGGGAGGGGAGAAGGTGAAGGAGCGGGAGCTGCCGGCCCC
GATGCTGGAGGTGCTGAAGGTGGCGCTGTCGCTGCTGCGTCGGCTGTCGA
ACCGGAACCTGACCGCGGCGGGGCCGTTCGCGTCCACGATGCAGATGTGG
CCGTCGGGGCATCCCCAGGAAGAAAAGGGCGAGACCGACCCCGAGCGGAA
CGACGGCGGCGACGACGGCGACGATAACGACGATGACGATGACGGAAGCC
CGCCGGCGGCCGGAGGCGCAGCAGCAGCAGGGGCGGCGGCGGCTGATACC
ACCGCCGGGAGGGGCGGCGGCGCGATGTCACCGCCGCAACCGCAGGCGCC
GGGGGCTCCGACCCCGATGGCCGTGGCAACGCCGATGGCTGTTGAGCCGC
CGTCGACCCCAGACGCGCCTTCGCGAGGGGCGGGAGCGAGAGGCGGCAGC
GGGGCCGCCGCTGCCGCTGATTCTACGCCTGTGGCAGGCAGAAATCAGTC
GTCGCAGGTGCGTCAGGGTCTCGGGATTGCGAAAGCGATTCGTCGTCTGC
TGTCTGAAGAAAAGGGCGAGACCGACCCCGAGCGGAACGACGGCGGCGAC
GACGGCGACGATAACGACGATGACGATGACGGAAGCCCGCCGGCGGCCGG
AGGCGCAGCAGCAGCAGGGGCGGCGGCGGCTGATACCACCGCCGGGAGGG
GCGGCGGCGCGATGTCACCGCCGCAACCGCAGGCGCCGGGGGCTCCGACC
CCGATGGCCGTGGCAACGCCGATGGCTGTTGAGCCGCCGTCGACCCCAGA
CGCGCCTTCGCGAGGGGCGGGAGCGAGAGGCGGCAGCGGGGCCGCCGCTG
CCGCTGATTCTACGCCTGTGGCAGGCAGAAATCAGTCGTCGCAGGTGCGT
CAGGGTCTCGGGATTGCGAAAGCGATTCGTCGTCTGCTGTCTCAGCAGGA
TGGCGGCAAGGCCAAGGCCAACACCCCGCCTCCCCGCTTCTCGTCGGACC
TGTTCATCCGCCGGGTGCACCTCTTGGTCGGGGAGGTGTTGGAGCCGCTG
TGGCGGGACCCGCGGCTGGCTTCGCTGCCGCCGGAGGCGGCTTCGCGGGT
GCTGGCGACGGTGCTGGAGCTCCTGCAGAGCCTCCAGCAGCAGGATGGCG
GCAAGGCCAAGGCCAACACCCCGCCTCCCCGCTTCTCGTCGGACCTGTTC
ATCCGCCGGGTGCACCTCTTGGTCGGGGAGGTGTTGGAGCCGCTGTGGCG
GGACCCGCGGCTGGCTTCGCTGCCGCCGGAGGCGGCTTCGCGGGTGCTGG
CGACGGTGCTGGAGCTCCTGCAGAGCCTCCAG back to top
|