mRNA_E-fasciculatus_F_contig10858.695.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig10858.695.1
Unique NamemRNA_E-fasciculatus_F_contig10858.695.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig10858.695.1 vs. uniprot
Match: A0A6H5K255_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K255_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 1.360e-23
Identity = 72/133 (54.14%), Postives = 85/133 (63.91%), Query Frame = 2 
Query:  284 RREPE*DAELALRMEKEERQRELGERLQQAASEKLAKELTATFEAADNXXXXXXXXXXXXXXXXXXXQLVLSSNSETVSGQSILAGNRFQSLVDESEDDQFPPLPSRPSMHPPWQVV----TKKKTKPNPSSE 670
            ++EPE DAE+A R+  EE  R L E+ QQAAS KLAKE+ +TF+AADN                   QLV S NSETVSGQS++AGNRF+SL DE EDDQFPPLPS   +  PWQVV    +KKK    PS E
Sbjct:  139 KKEPETDAEIATRLSWEENARMLREKRQQAASAKLAKEMESTFQAADNYVPPLQLCEGDESS-----QLVFS-NSETVSGQSVMAGNRFESLFDEGEDDQFPPLPSVQRVLNPWQVVEHRGSKKKKLDTPSPE 265
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10858.695.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K255_9PHAE1.360e-2354.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10858contigE-fasciculatus_F_contig10858:1933..2602 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size671
Cds size348
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927586.5244477-UTR-E-fasciculatus_F_contig10858:1932..22541622927586.5244477-UTR-E-fasciculatus_F_contig10858:1932..2254Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10858 1933..2254 +
1695995608.2687879-UTR-E-fasciculatus_F_contig10858:1932..22541695995608.2687879-UTR-E-fasciculatus_F_contig10858:1932..2254Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10858 1933..2254 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927586.5374842-CDS-E-fasciculatus_F_contig10858:2254..26021622927586.5374842-CDS-E-fasciculatus_F_contig10858:2254..2602Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10858 2255..2602 +
1695995608.2785437-CDS-E-fasciculatus_F_contig10858:2254..26021695995608.2785437-CDS-E-fasciculatus_F_contig10858:2254..2602Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10858 2255..2602 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10858.695.1prot_E-fasciculatus_F_contig10858.695.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig10858 2255..2602 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig10858.695.1

>prot_E-fasciculatus_F_contig10858.695.1 ID=prot_E-fasciculatus_F_contig10858.695.1|Name=mRNA_E-fasciculatus_F_contig10858.695.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=116bp
MEKEERQRELGERLQQAASEKLAKELTATFEAADNNAPPPPQETDSSSEA
DDSSQLVLSSNSETVSGQSILAGNRFQSLVDESEDDQFPPLPSRPSMHPP
WQVVTKKKTKPNPSSE
back to top

mRNA from alignment at E-fasciculatus_F_contig10858:1933..2602+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig10858.695.1 ID=mRNA_E-fasciculatus_F_contig10858.695.1|Name=mRNA_E-fasciculatus_F_contig10858.695.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=670bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10858:1933..2602+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCTGCTGTTGTTGATGTTGTGCATACGTCAAGGTGGGGACGCTGAGAGGG
AAGTGCCCGTGGGGGAAGGGGAAACGAACAAGAGGGGGGCCGAGGTTGTG
GCCGAGAAGGATGGTGGTGAGGGGAGTGCCTCGGGGAATGAGGGGGAAGG
AGATGATTGGTCACGGGCGACGGGTGACAAGGTGAGAGACAAATCAAGTT
TGATCCTCGAACTGTTGCAAACGGAGTTTGCGGGTGATGTGGAACCTCTG
AAAACCATGGTGTCGAACTTGGGAGGTGGAGGGAGGAGAGAGCCTGAGTA
AGACGCTGAACTCGCACTTCGTATGGAAAAGGAGGAAAGACAACGAGAGT
TGGGAGAGAGGCTCCAACAAGCGGCCAGTGAGAAGTTGGCGAAAGAGTTG
ACCGCAACGTTTGAAGCAGCTGACAACAATGCACCGCCTCCTCCGCAAGA
AACTGATTCTAGTAGCGAAGCAGATGACTCTAGTCAACTGGTGTTGTCCA
GCAACTCAGAGACAGTGTCTGGCCAGTCGATCCTAGCGGGAAATCGTTTC
CAGTCCCTGGTAGACGAGAGTGAGGATGACCAATTTCCTCCACTACCGTC
CCGGCCATCCATGCATCCGCCGTGGCAGGTAGTCACGAAGAAGAAAACCA
AACCAAACCCCAGCAGCGAA
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10858:1933..2602+

>mRNA_E-fasciculatus_F_contig10858.695.1 ID=mRNA_E-fasciculatus_F_contig10858.695.1|Name=mRNA_E-fasciculatus_F_contig10858.695.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=696bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10858:1933..2602+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGAAAAGGAGGAAAGACAACGAGAGTTGGGAGAGAGGCTCCAACAAGC
GGCCAGTGAGAAGTTGGCGAAAGAGTTGACCGCAACGTTTGAAGCAGCTG
ACAACAATGCACCGCCTCCTCCGCAAGAAACTGATTCTAGTAGCGAAGCA
GATGACTCTAGTCAACTGGTGTTGTCCAGCAACTCAGAGACAGTGTCTGG
CCAGTCGATCCTAGCGGGAAATCGTTTCCAGTCCCTGGTAGACGAGAGTG
AGGATGACCAATTTCCTCCACTACCGTCCCGGCCATCCATGCATCCGCCG
TGGCAGGTAGTCACGAAGAAGAAAACCAAACCAAACCCCAGCAGCGAAAT
GGAAAAGGAGGAAAGACAACGAGAGTTGGGAGAGAGGCTCCAACAAGCGG
CCAGTGAGAAGTTGGCGAAAGAGTTGACCGCAACGTTTGAAGCAGCTGAC
AACAATGCACCGCCTCCTCCGCAAGAAACTGATTCTAGTAGCGAAGCAGA
TGACTCTAGTCAACTGGTGTTGTCCAGCAACTCAGAGACAGTGTCTGGCC
AGTCGATCCTAGCGGGAAATCGTTTCCAGTCCCTGGTAGACGAGAGTGAG
GATGACCAATTTCCTCCACTACCGTCCCGGCCATCCATGCATCCGCCGTG
GCAGGTAGTCACGAAGAAGAAAACCAAACCAAACCCCAGCAGCGAA
back to top