mRNA_E-fasciculatus_F_contig10850.690.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig10850.690.1
Unique NamemRNA_E-fasciculatus_F_contig10850.690.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig10850.690.1 vs. uniprot
Match: A0A6H5K749_9PHAE (WW domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K749_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 2.910e-12
Identity = 46/74 (62.16%), Postives = 48/74 (64.86%), Query Frame = -2 
Query:   57 DQWWAGGSDIAPSAASTGADRAAERGTTGDGLAGQSEGGGRAGKHNG--------------ETSGTEETIAAEK 236
            DQWW G S IAPS AS GA R AE GTTGDGLAGQSEGGGR GKH+G                SGT+E IAAEK
Sbjct:  345 DQWWTGVSVIAPSTASAGAGRIAELGTTGDGLAGQSEGGGRIGKHDGVLGAAGAGADQARLAASGTDEIIAAEK 418
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10850.690.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K749_9PHAE2.910e-1262.16WW domain-containing protein n=1 Tax=Ectocarpus sp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10850contigE-fasciculatus_F_contig10850:535..771 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-26_002210.1
Exons1
Model size237
Cds size237
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927586.0334485-CDS-E-fasciculatus_F_contig10850:534..7711622927586.0334485-CDS-E-fasciculatus_F_contig10850:534..771Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10850 535..771 +
1695995608.0334144-CDS-E-fasciculatus_F_contig10850:534..7711695995608.0334144-CDS-E-fasciculatus_F_contig10850:534..771Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10850 535..771 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10850.690.1prot_E-fasciculatus_F_contig10850.690.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig10850 535..771 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig10850.690.1

>prot_E-fasciculatus_F_contig10850.690.1 ID=prot_E-fasciculatus_F_contig10850.690.1|Name=mRNA_E-fasciculatus_F_contig10850.690.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=79bp
SAVPSAVAAAEGAAAAAPPFSAAMVSSVPDVSPLCFPALPPPSLCPARPS
PVVPRSAARSAPVLAAEGAMSEPPAHHWS
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mRNA from alignment at E-fasciculatus_F_contig10850:535..771+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig10850.690.1 ID=mRNA_E-fasciculatus_F_contig10850.690.1|Name=mRNA_E-fasciculatus_F_contig10850.690.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=237bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10850:535..771+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TCAGCCGTACCGTCTGCTGTTGCCGCTGCCGAGGGCGCCGCCGCCGCCGC
TCCTCCCTTTTCGGCGGCGATGGTCTCCTCCGTGCCCGACGTTTCCCCGT
TGTGTTTTCCCGCCCTCCCGCCGCCCTCGCTCTGCCCTGCCAGGCCATCG
CCCGTCGTCCCTCGCTCTGCTGCCCGGTCAGCTCCGGTGCTCGCGGCTGA
AGGAGCGATGTCGGAACCCCCTGCCCACCACTGGTCC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10850:535..771+

>mRNA_E-fasciculatus_F_contig10850.690.1 ID=mRNA_E-fasciculatus_F_contig10850.690.1|Name=mRNA_E-fasciculatus_F_contig10850.690.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=474bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10850:535..771+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TCAGCCGTACCGTCTGCTGTTGCCGCTGCCGAGGGCGCCGCCGCCGCCGC
TCCTCCCTTTTCGGCGGCGATGGTCTCCTCCGTGCCCGACGTTTCCCCGT
TGTGTTTTCCCGCCCTCCCGCCGCCCTCGCTCTGCCCTGCCAGGCCATCG
CCCGTCGTCCCTCGCTCTGCTGCCCGGTCAGCTCCGGTGCTCGCGGCTGA
AGGAGCGATGTCGGAACCCCCTGCCCACCACTGGTCCTCAGCCGTACCGT
CTGCTGTTGCCGCTGCCGAGGGCGCCGCCGCCGCCGCTCCTCCCTTTTCG
GCGGCGATGGTCTCCTCCGTGCCCGACGTTTCCCCGTTGTGTTTTCCCGC
CCTCCCGCCGCCCTCGCTCTGCCCTGCCAGGCCATCGCCCGTCGTCCCTC
GCTCTGCTGCCCGGTCAGCTCCGGTGCTCGCGGCTGAAGGAGCGATGTCG
GAACCCCCTGCCCACCACTGGTCC
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