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Homology
BLAST of mRNA_E-fasciculatus_F_contig1083.664.1 vs. uniprot
Match: A0A6H5JGK1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGK1_9PHAE) HSP 1 Score: 140 bits (353), Expect = 3.350e-35 Identity = 82/102 (80.39%), Postives = 87/102 (85.29%), Query Frame = 2
Query: 2 ALSRQVKQVQQVDEDLCYDDVEAPTPPLEDTAQGRHSSAATAGSSSQKAKQQAMMASAATAPIDDVPPTYDELEPDGTSPAGGRVPAKTLVTIDLESEGRRR 307
A+SRQVKQVQQVDEDLCYDDVEAPTPP ED A+ R S+ ATAG S KAKQQAM ASAATAPIDDVPPTYDEL+ D SPAGGR P KTLVT+DL SEGRRR
Sbjct: 32 AISRQVKQVQQVDEDLCYDDVEAPTPPSEDAARVRPSATATAGLSP-KAKQQAM-ASAATAPIDDVPPTYDELDADAPSPAGGREPPKTLVTVDLGSEGRRR 131
BLAST of mRNA_E-fasciculatus_F_contig1083.664.1 vs. uniprot
Match: D7FUK1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUK1_ECTSI) HSP 1 Score: 79.3 bits (194), Expect = 9.060e-15 Identity = 40/48 (83.33%), Postives = 41/48 (85.42%), Query Frame = 2
Query: 164 MASAATAPIDDVPPTYDELEPDGTSPAGGRVPAKTLVTIDLESEGRRR 307
MASAATAPIDD PPTYDELE D SPAGGRVPAK LVT+DL EGRRR
Sbjct: 1 MASAATAPIDDAPPTYDELEADAPSPAGGRVPAKMLVTVDLGPEGRRR 48
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | no signal peptide or anchor |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-02_002960.1 |
| Exons | 3 |
| Model size | 2890 |
| Cds size | 150 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1083.664.1 >prot_E-fasciculatus_F_contig1083.664.1 ID=prot_E-fasciculatus_F_contig1083.664.1|Name=mRNA_E-fasciculatus_F_contig1083.664.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=50bp
MMASAATAPIDDVPPTYDELEPDGTSPAGGRVPAKTLVTIDLESEGRRR* back to topmRNA from alignment at E-fasciculatus_F_contig1083:15868..20140- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig1083.664.1 ID=mRNA_E-fasciculatus_F_contig1083.664.1|Name=mRNA_E-fasciculatus_F_contig1083.664.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=4273bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1083:15868..20140- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGCCCTCAGTCGGCAGGTGAAACAGGTCCAGCAGGTGGACGAAGACCTGT
GCTACGACGATGTGGAAGCGCCCACCCCGCCTTTGGAGGATACTGCCCAG
GGCCGTCACTCCTCCGCCGCAACGGCCGGCTCGTCGTCGCAAAAAGCGAA
ACAGCAGGCGATGATGGCATCGGCGGCAACGGCGCCAATTGACGACGTGC
CGCCTACGTACGACGAGCTCGAACCTGATGGCACCTCCCCGGTATGTGTT
TATTTTTGGTGGCTGCCGTTTTATTTGCAGCATTTTTTGTTTCAAACGGA
GGTTGTGAGGCAGTGGTATTTTTTTGTTTGTTTCCGCCGTCACAAACAAT
CTAGTGCTGAAACCGCTGCCTCCTACTCTGCTACGATGCACCCGGCTCGT
CGCCAAGGTCGATCTGCGTGTCACACACACCAGTATTGTAGTCTCTGTTG
CGTTTCCGACCGTTCGCCCCCATGAGTGCATCACGCCCAAGATTTAGTTC
TTTGTGGGCGCGTGCAGTTGTCTGTTCCGTTTTCCCTCGTGTACTCCGTG
TTGCCCTGTTACAGAGGTATTCACACGCGTAGATGTCTCGACCAACCAGT
GTTTGTGAAAGCTCGATGCCTTTCGCGGTAGAACGAAGCTTTTGCGTGGG
GGCGGTTCAGCACAAAATTGCGAGAGATGGGACCCCCCCTAGATCGACTT
TCAAAGCTCGACTTCTCCACAAAACAAGTGGGTGCGGAAAGATCCCGATA
CGGTTGTGTAAATCCCATTGACGAGATTTTTCCAAAACCACCAACTTTGG
TGCTTGCACAATCTTCTCGGCGGAGCATTCGAGCTTTCAAAACCGGGCTA
CGGGGAGCGCCGTCTCTGTCGCTCCCTTGCGGTATTCGACGTCAAGAAGC
TGAGCACTGGATAAGGGGTGTCGTCGAGACTCTTTTTGTTTTGGTGCTGC
AGCTTCGATGTTTTGACTCCAGTGTTGTTTGCAGCTATCGGCGGCGAGGG
GGAGGGATTGGTCTTCTTCGATGAAAAGATCTGTTCAGCGAGATTGTTCT
ACCTCGCCATGTAGCTCCCATCGATTTTCCGTAACACCAGTGCTCACTGT
GTTTTCTGTAGAGTATGCCGCTTCCCCAGTTACTTCTTCATCGCTCCCCG
ACCCTCACCGACGATGGGTTGTGATTCTCTGTTCTAACACCGTTTGCTTC
CGCTGTTTTTGTGTTGTTTTTTTGTTCCTGCAGGCCGGCGGCAGGGTACC
AGCCAAGACGCTCGTCACCATTGACTTGGAGTCTGAGGGGCGAAGTGAGT
AAAGCGCTGGCCGTTCCCAACTTGTGAAACGAAGTTCTCGAGGGGAGGTT
GGGAGTTTCCGTTCCTTGTTTTGTCTCTCCGCATTTCCTTGTGTATCCCC
CCGCAAGAATCCAGGACACGCTTGGAAGTAACGTCGCGCAAACGAGGGCT
TTGTCGTCATCGTCGTGATGATCGTCATGGCCGTTCTCTTGGTACTCCTC
CTCAGTTCTTGAAACGTCGGTAGATAGTTGTGTTGTTTCCTCGCGTGACT
CCAAAACCGGTCGACGAACGCGAGACACGAGACACCCTCAACAACATGCC
TCTGCCTTGCCTACGTAGCACCTAGCACCAACTATGTTAAAGACGGTGGA
CACCGATCCTGCTGCCTCGTGCTGTCGTGAAACAGGACGATGAGCCTGGA
AGTGAAGGACAGCGTCACCCGATGCCATCGTGTGACGTCGGCGCTTGGTG
GCAACGGGAGAAGCGACTATGATGCGCCGCCGAGCGTCAGCTGACGAAGG
CGTGCGACGCTCTCTCGGGGCGCATGTATTCATGTACCACACGCCAGCCA
GCTCACTGGCTTTCCTCGTGCCTTCCTTGCGGGTGCTACGTTTGCGCGTT
GGCCTGGATGTGGTGGTGGTGTGGTCGTGGCCACAGACCTAGCTGTGGAG
AATAACTACCCGACGAGGGAACGAACAGGAGAGGCCCAGGCGTTGCTTGA
CGGGCGGGCAAGTTGCAGAGGGAACGCAAGGACGGCCAAGGCAAGAACGG
GAGAAACTGGTGGGCGGGGGGGTTCCCCGGCATGGAGAGAGTGTTGGACC
TCTTGCACTGGATGGGGGTGAAGCAAAGGTGAAAATGAGGAGGGGGTGGT
TGTGTAGGCAAACGAATATAGGCGGGCGGGTAGCAGGCAACGTGATATGC
GTGGCTCAGGTGGTAGGTTTGGGCCGGAGTGGGTACGCGCAAGTGGGACT
GTGTACAATGGTTGTCGTCTAACGCTCTTCAAACATAGCAGGAGATGCTC
ACTACAGGACCTGACTGTTGGATTTGTTTTTTTTACCTAGGGGCTGAAGG
CAGCAGTAGAGGCGGCAGCGGCCCCGTGAGTGTCGGTGTTTCTTATTGCT
TGTGTAGTAAGAGGGCGTGGAGATGGGGGCGATGCTTTGTTTTCACGTAA
TTTTCCTTCTTGGAGGGAGGTGTCTCTTGCGGTGCTTGGAGGTCGTAGGA
ATCTGCTGGGGGCAGAGTCGGGGTGCTGTATATTCGGACGAGCAACCCCG
GCTGTGGCCAACTGTGCGAGCCGACAAGAGCTGCACGATTTTCATGTTCC
ATGGTTGTGATGGTTTCGGGTCTAGATGTCTTGCGTTTTTTAAGATGCCA
TTGTATTGTCCTCGACTTGTTTTGTGATACATGCCCCCTTTCACGGTTCG
GTACTAGTCTCCCTTTCACGATTGGGTACCACTCCCCCTTTCACCGTTTT
TATGGGCGGGTGACGCGTCCCGCGAAGTATGAAACGCCGCGGCCATGGGT
ATCCTTTTTTGACTCTACCTTATACATGTTGGGCGTTCATACGTATGCTG
TTCTTGAACATAGGGCTCGGGCAATACACGTTACTTGCCGTAGGCCTTGT
CATCCGGGCTGGGGGACTTCCGTTGGTTTCGCTGCTGTCGCATTAGTTGC
GGGGGTCTCGTTGTAAGCACCGTTTCGAGCGCAGACAGATGCTCGCCTCC
ACGCGATAACCCACTTCCCATCTTCCGCGATACCTTCCGTCGAGACCACT
TGACAACGGGGCTCTTGGGGCCCGCGCTACGCGCGTCCTAAAGAAATCGT
GCGTTGCAGTCGGTGTTGGAGGGCCGGCTCGTTTGGTTCCCCTTGTGCAG
CCGACTTGTTGTTGCGAGGCACCCGGGTTGGGAGTCGAGGGCATCGTTAC
GTATTTGTTGATTCCGATCTTGTTTTTTGTTTTGTTTAAGGGGTTGGGGG
CCCGTTGCATTCCGTCATCTTTTCGGTGGTGGTTGTGTGCCCTACGTGCT
GTCTGTTTGCGTTGCCACACCCACCCTTGTACGGCGTTTGATCTTTTTAC
ACGTGTTCGTATTTTCCAAGTGATTTATGTTTGTTGCCATTGTCAGGGGA
AGAGGATGACGGGGGCGAATGAGGTGCAAGGGAGAAATCATCATGTCGGA
TGTATCTCACCATTTCTTGTCTTTTTCGAGGGCCTGTGTTGATGGAAGAG
AGTTAATGTCGAGATCTTCAAGCGAAAGAACCGGGTGCGTTGAGAGAGTC
CTTGATCTCCCCGTCGCAGCGATACATCGTTAGATATATTGTCCCTAGCA
GCATCAGATGGTTGATTGTTTTGCGTCGGGGGAAGGTTTTGCGGAGAGAT
TGGTTGCGTTGGTTGCACGCGCAATTTTTTATGAGACGTAGTCGTGCACC
CCGCTCATGGTGTGGTGCGCCCCATGTTGCTGGTTTCAAAAGTGGTGAGC
ATTTCAGTTTGTTGTCCGAGGAGCGCGTGTCTGTGGAGAGTTTTAAGCAT
TCTCCCAGCAAAGGCCAAGGCCGGTTCTTACCACGTTCTTCTCCTTGTGC
AAACCATTCCCGCGCCGGGTTTACCATGTTGTTTGCGACTATCCCGTTCG
ATTCTTATCTATTTCGCGCCGGCGTTGCCTAGTAGTGAAGGTATCGCGGT
TCGTCCGCTGCCACACGCAAGCTTGAGGGAAGATCTATTTGCTTTCCAGG
ACAAACGACTAGTCGCGCTAGAGTGGCCGCAAAGCACCGGAAATAGCGGT
GAGGGCGCCAATACTCTTACGTTGTGTGCATGGGGACAGGGGCCTGCATG
CTATTCCATTTGTTTCCTCTCCGTCGTTGTTTCGTCTTGTTTACACTGTG
GGGTGCGTTGGTGCTGCTGCTCGAACGACGGCAGCAACCAATTTAACCGA
ACGAGACGTGTTTGTTTCTGGTAACGGCTGGAAGATGATCGGAATGAGTG
GACACGCTCCAAATTCAGTCGCC back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig1083:15868..20140- >mRNA_E-fasciculatus_F_contig1083.664.1 ID=mRNA_E-fasciculatus_F_contig1083.664.1|Name=mRNA_E-fasciculatus_F_contig1083.664.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=300bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1083:15868..20140- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGATGGCATCGGCGGCAACGGCGCCAATTGACGACGTGCCGCCTACGTA
CGACGAGCTCGAACCTGATGGCACCTCCCCGATGATGGCATCGGCGGCAA
CGGCGCCAATTGACGACGTGCCGCCTACGTACGACGAGCTCGAACCTGAT
GGCACCTCCCCGGCCGGCGGCAGGGTACCAGCCAAGACGCTCGTCACCAT
TGACTTGGAGTCTGAGGGGCGAAGCCGGCGGCAGGGTACCAGCCAAGACG
CTCGTCACCATTGACTTGGAGTCTGAGGGGCGAAGACGATGAGACGATGA back to top
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