mRNA_E-fasciculatus_F_contig10794.636.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig10794.636.1
Unique NamemRNA_E-fasciculatus_F_contig10794.636.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig10794.636.1 vs. uniprot
Match: D7G9B5_ECTSI (PPR_long domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9B5_ECTSI)

HSP 1 Score: 55.1 bits (131), Expect = 3.010e-6
Identity = 31/38 (81.58%), Postives = 32/38 (84.21%), Query Frame = -2 
Query:   93 TASPPSTSPVLRLNTPLTRTPASGT--LLSSLCPPGGR 200
            TASP STSPVL+LNTPLTRTPA G   LLSSLCP GGR
Sbjct:  229 TASPQSTSPVLQLNTPLTRTPARGARLLLSSLCPTGGR 266
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10794.636.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G9B5_ECTSI3.010e-681.58PPR_long domain-containing protein n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10794contigE-fasciculatus_F_contig10794:2732..3108 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size379
Cds size375
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927580.1885512-CDS-E-fasciculatus_F_contig10794:2731..31061622927580.1885512-CDS-E-fasciculatus_F_contig10794:2731..3106Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10794 2732..3106 +
1695995605.1746438-CDS-E-fasciculatus_F_contig10794:2731..31061695995605.1746438-CDS-E-fasciculatus_F_contig10794:2731..3106Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10794 2732..3106 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10794.636.1prot_E-fasciculatus_F_contig10794.636.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig10794 2732..3106 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig10794.636.1

>prot_E-fasciculatus_F_contig10794.636.1 ID=prot_E-fasciculatus_F_contig10794.636.1|Name=mRNA_E-fasciculatus_F_contig10794.636.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=125bp
PVPAVVVSPSPPAAAIVATTPFPAADNTPPPRPPGGHKEDKRVPLAGVRV
RGVLRRRTGEVDGGDAVPCCRRRRAKTCPEDWPRKLDEEVSRRLALGRLR
RNGHEGGVARAAAAGRRGGAANASL
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mRNA from alignment at E-fasciculatus_F_contig10794:2732..3108+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig10794.636.1 ID=mRNA_E-fasciculatus_F_contig10794.636.1|Name=mRNA_E-fasciculatus_F_contig10794.636.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=377bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10794:2732..3108+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCGGTCCCCGCCGTCGTCGTGTCGCCATCCCCCCCGGCCGCGGCCATCGT
TGCCACAACTCCCTTTCCAGCCGCCGACAACACCCCGCCGCCCCGACCTC
CGGGTGGGCATAAGGAAGACAAGAGGGTACCGCTAGCGGGAGTTCGGGTG
AGAGGCGTGTTGAGGCGGAGAACCGGGGAAGTGGACGGCGGAGACGCGGT
GCCCTGCTGCCGCCGCCGTCGTGCCAAGACCTGTCCAGAGGACTGGCCAA
GGAAGCTCGACGAAGAGGTCTCGAGGAGACTTGCTCTCGGCCGCCTTCGC
CGCAATGGGCACGAAGGAGGCGTCGCCCGCGCCGCCGCCGCCGGGAGACG
GGGGGGGGCGGCGAACGCCAGTCTTCC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10794:2732..3108+

>mRNA_E-fasciculatus_F_contig10794.636.1 ID=mRNA_E-fasciculatus_F_contig10794.636.1|Name=mRNA_E-fasciculatus_F_contig10794.636.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=750bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10794:2732..3108+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCGGTCCCCGCCGTCGTCGTGTCGCCATCCCCCCCGGCCGCGGCCATCGT
TGCCACAACTCCCTTTCCAGCCGCCGACAACACCCCGCCGCCCCGACCTC
CGGGTGGGCATAAGGAAGACAAGAGGGTACCGCTAGCGGGAGTTCGGGTG
AGAGGCGTGTTGAGGCGGAGAACCGGGGAAGTGGACGGCGGAGACGCGGT
GCCCTGCTGCCGCCGCCGTCGTGCCAAGACCTGTCCAGAGGACTGGCCAA
GGAAGCTCGACGAAGAGGTCTCGAGGAGACTTGCTCTCGGCCGCCTTCGC
CGCAATGGGCACGAAGGAGGCGTCGCCCGCGCCGCCGCCGCCGGGAGACG
GGGGGGGGCGGCGAACGCCAGTCTTCCGGTCCCCGCCGTCGTCGTGTCGC
CATCCCCCCCGGCCGCGGCCATCGTTGCCACAACTCCCTTTCCAGCCGCC
GACAACACCCCGCCGCCCCGACCTCCGGGTGGGCATAAGGAAGACAAGAG
GGTACCGCTAGCGGGAGTTCGGGTGAGAGGCGTGTTGAGGCGGAGAACCG
GGGAAGTGGACGGCGGAGACGCGGTGCCCTGCTGCCGCCGCCGTCGTGCC
AAGACCTGTCCAGAGGACTGGCCAAGGAAGCTCGACGAAGAGGTCTCGAG
GAGACTTGCTCTCGGCCGCCTTCGCCGCAATGGGCACGAAGGAGGCGTCG
CCCGCGCCGCCGCCGCCGGGAGACGGGGGGGGGCGGCGAACGCCAGTCTT
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