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Homology
BLAST of mRNA_E-fasciculatus_F_contig10792.635.1 vs. uniprot
Match: D8LNV3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNV3_ECTSI) HSP 1 Score: 285 bits (729), Expect = 1.110e-91 Identity = 180/194 (92.78%), Postives = 183/194 (94.33%), Query Frame = 1
Query: 100 LTLLCPLHYCAARGMLDNLVAEVAKGRSVNTVGSGGDTPLXXXXXXXXXXXXXXXXXXXXDPLRRNXXXXXXLDVARRHGHGTGGGRVAGGVVGVLEGVTAEAAAAIAKREAEEAAARSANGGYSEGESVVYMRNGEAHPAVVMKVHQDDEEPYYTVRVHETGRERQTDANHLVRSLPKKTPPGVGEPSPDGSS 681
LTLLCPLHYCAARGMLDNLVAEVAKGRSVNTVGSGGDT XXXXXXXXXXXXXXXXXXXX XXXXXX VARR+GHGTGGGRVAGGVVGVLEGVTAEA AAIAKREAEEAAARSANGGYSEGESVVYMRNGEAHPA+VMKVHQDDEEPYYTVRVHETGRERQTDANHLVRSLPK+TPPGVGEPSPDGSS
Sbjct: 148 LTLLCPLHYCAARGMLDNLVAEVAKGRSVNTVGSGGDTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVARRYGHGTGGGRVAGGVVGVLEGVTAEAEAAIAKREAEEAAARSANGGYSEGESVVYMRNGEAHPAIVMKVHQDDEEPYYTVRVHETGRERQTDANHLVRSLPKETPPGVGEPSPDGSS 341
BLAST of mRNA_E-fasciculatus_F_contig10792.635.1 vs. uniprot
Match: A0A6H5KSL0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSL0_9PHAE) HSP 1 Score: 212 bits (539), Expect = 1.070e-62 Identity = 110/118 (93.22%), Postives = 114/118 (96.61%), Query Frame = 1
Query: 322 VARRHGHGTGGGRVAGGVVGVLEGVTAEAAAAIAKREAEEAAARSANGGYSEGESVVYMRNGEAHPAVVMKVHQDDEEPYYTVRVHETGRERQTDANHLVRSLPKKTPPGVGEPSPDG 675
VARRHGHGTGGGRVAGGVVGVLEGVTAEA AAIAKR+AEEAAARSANGGY+EGESVVYMRNGEAHPA+VMKVHQDDEEPYYTVRVHETGRERQTDANHLVRSLP +TPPGVG SPDG
Sbjct: 145 VARRHGHGTGGGRVAGGVVGVLEGVTAEAEAAIAKRKAEEAAARSANGGYNEGESVVYMRNGEAHPAIVMKVHQDDEEPYYTVRVHETGRERQTDANHLVRSLPMETPPGVGGSSPDG 262
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 288.1 |
| Seed ortholog evalue | 4e-75 |
| Seed eggNOG ortholog | 2880.D8LNV3 |
| KEGG ko | ko:K16726 |
| EggNOG free text desc. | response to abiotic stimulus |
| EggNOG OGs | COG0666@1,KOG4177@2759 |
| COG Functional cat. | G |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko03036 |
| Hectar predicted targeting category | signal peptide |
| Ec32 ortholog description | Ankyrin repeat-containing domain |
| Ec32 ortholog | Ec-08_005710.1 |
| Exons | 5 |
| Model size | 768 |
| Cds size | 768 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig10792.635.1 >prot_E-fasciculatus_F_contig10792.635.1 ID=prot_E-fasciculatus_F_contig10792.635.1|Name=mRNA_E-fasciculatus_F_contig10792.635.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=256bp
MRFLFFLVVSGASPTLENMKGSTAVMLAKTETALTLLCPLHYCAARGMLD
NLVAEVAKGRSVNTVGSGGDTPLHAAATTGNIDSTRLLLDRGADPLRRNA
HGETPLDVARRHGHGTGGGRVAGGVVGVLEGVTAEAAAAIAKREAEEAAA
RSANGGYSEGESVVYMRNGEAHPAVVMKVHQDDEEPYYTVRVHETGRERQ
TDANHLVRSLPKKTPPGVGEPSPDGSSSSPPSCCPDGDGGAPREEQVGGG
GGGGGG back to topmRNA from alignment at E-fasciculatus_F_contig10792:1..3533- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig10792.635.1 ID=mRNA_E-fasciculatus_F_contig10792.635.1|Name=mRNA_E-fasciculatus_F_contig10792.635.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3533bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10792:1..3533- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCGCTTTCTTTTTTTCTTGGTGGTTTCAGGCGCGAGTCCCACGCTGGA
GAACATGAAGGGGAGCACGGCTGTGATGCTCGCCAAGACCGAGACGGCGT
TGACGCTGCTGTGCCCCCTGCACTACTGCGCTGCGAGGGGCATGCTAGAC
AACCTTGTGGCGGAGGTCGCCAAGGTGCGGGTTCCGCCGGTCACGAGGGC
ATGTGTGTGTGTGTGTGTCTTTGTTGTTAGCGTCGACCGCGCTAACCAAT
TAAAATAAGGAGAATAAGTCAGTCTCAGCGCGGTTGAAAGCAGAAAATTC
TTCTATAGGCCATGGTTTGAGAACCCGTGAGGGGGCGTCGCGGGGAAGAC
TAAGCTACTCTCCGGATTAACGACAGAAACGGTATCGTGTGTGTGTATGT
GGCGGCAGAGCGGAGAGGTAGGAACCTCGGCTTCGCACCCATGCCCGACA
CTCGCTTTTTGATTATCTGTTCTCGCCCCCGATAGACGTCGATTCTCTCA
CCGCATCGCGCATATTCGGAACACAAACAGGCGTAAACCGACTCCGACAC
CCATACAAGGTTAAATATGGCAACCCATCCCCCCCCCCAATTCCATCCTG
CGGCATCCCCAAACGAAGCATAGGCCGTAACACACGACTCACTTTGCGTA
TTCCACAGACCCCCAAAATGCCACCAAATGGCACGGGAGATCCGTGAACA
CAGTCGGAGGCGACCCCCCCCCCCTCCATCCAGCGGCGGGCCCTGAATGA
ATTGCAGACCTGACCTCAACACGCGAATCCCTGCCCTGTTCCACACACGT
GGCAGGGGAGGTCAGTCAACACCGTCGGTAGCGGGGGTGACACCCCCCTC
CACGCCGCCGCCACCACCGGTAACATCGACTCGACCCGCCTGCTGCTGGA
TCGAGGAGCGGACCCGCTGCGAAGAAACGCCCACGGGGAAACCCCGCTGG
ACGTCGCTCGACGGCACGGGCACGGCACCGGCGGCGGACGGGTCGCGGGG
GGCGTCGTCGGGGTGTTGGAAGGCGTTACGGCGGAGGCAGCGGCGGCGAT
AGCCAAGAGGGAGGCGGAAGAAGCCGCCGCCAGGTCGGCGAACGGGGGTT
ATAGCGGTGAGATAGGTTGTGTTTTTAAGGGGTGGGGAAGCACTGCCGCC
GCGGTCCTTTCGTCGACCTACCGGATGGTGTTCGTTGTGTCTTGAAAGGA
CGGGGGGGGGGGCGGGGGCATAGGGAGATATACCGTAATTTCCATGCCCT
TTGTTCGGGAACAGGCCGGGGTAGGGCCGCTGTTGCCATGCTCCAGCGTC
TCTCTGCTCGTGTAGGTTGGCGGTGCTTTTCGGTTTTGTCCAAGAGCCCC
AACTAAAAAGATGGTGGTGCACACGAAGGGTACATGATTTTGCGAAACTC
TGTGAATGTTTCAACACTTTTGGGTTTTGCGAGGGAGAGCAAGATGAACT
GGTTTGGAAATTCAATCTGTCAGTCCGTCGTATACACCATACGGCAAGAG
TATTAGCTTTTGTGCCCAGCGAAGCCGATGTTTATGACGCGAAACGCTCA
TATTTGGTCACAGCAGTGCCGGCTACTATTAATATGTAAGTCGTTTGTGT
CACTTGTTTGATCGCCCGCGTGAATTTCTTGTCAAAACTGCTGCGGTTGT
CTTCCGGGGCAGAGGGGGAATCCGTCGTGTACATGCGCAACGGAGAGGCG
CACCCGGCAGTTGTCATGAAGGTGGGGATGGGGAAAGCAATCCCGAAGAT
TTTGTAAGAGGAGTGTTGGTGCTTTGTGCCACACCCGAGAGAGCAAGCAG
GCGACGACTAGGAGGGCTCTGTGTCGCTAAAAACAAGCCTATGCGAGGGT
CTCACTGTACGTTTCTACGCCCGATAGCCCCTGGCATGTATGTAGCAGGA
GGAGTGCCGCGTGATGTCATGTCCCAGGTGCAGAGAGGGAGTGCCCTACC
GTCCTTACCAATGACAAAAGCCCTACCGTCCTTACCTATGACAAAAGACC
CCAACGTACGAAGACGCCTCCAAGGGTTTGGAACCCCTGGAGCAGAACCC
CTGGAGCAGGAGGAGTGCCGCGTGATGTCATGTCCCGGGTGCAGAGAGGG
AGTGCCCTACCGTCCTTACCTGAGGCGAAAGACCCCAACGTATACAGACG
CCTCCAAGGGTTTCGCCCAGCAGGACACCGCACACAAGAGCGGTACTGTA
GGGCAGTAGTTCTGACGGGCGGAAAATCGCAGCAGCATATCTTTTTGGGT
GGTGCGAGAAAACACCTAAATGCGGATCCACAAAGCCCGCTTGTTGTGTC
CCGGCATTGTAGGGATGAGGGGTCAATGCTCTACCGACTGCGGCATGCGT
TTACATGAGTAACCCCCCCCCCCCCCCCCCACTCGCACCGCCGCGGCGAT
CCCCTGCCAGACAACCCCCCCCCCCCCCCCCCTGACGCAGGTCCACCAGG
ACGACGAAGAGCCATACTACACCGTGCGGGTTCACGAGACGGGAAGGGAG
AGGCAGACGGATGCTAACCACCTCGTGCGGAGCCTGCCGAAGAAGACGCC
TCCGGGGGTAGGAGAACCCTCTCCCGATGGGTCATCGTCATCACCGCCGT
CGTGTTGTCCGGACGGCGACGGAGGAGCACCACGAGAAGGTCAGCTGCGC
GACAGTATAAATAGCAGCGTTCGTCAGGGTGGCTGTACCGTGTTGAAGGC
GTTTTCGGCGCCATTAGCGTGTTGTTTTCGCGATGGATCGTTCGCTTCGC
TTCGCTTGTTGTGTCGCAGTGTGGACATGTGCACCTGCGGTTTGTTTCAC
CGCTTGTTGTGGCAGGCGTATCGCGTGATCGTCGTGCAGGGCAAGCGCCT
TTTGCCTGCGCCCCCTTGTCCCCCGCCACGCCGGCTTGTGGTCACAGTGT
GAAAAACATTTGGCACTGCTTTTGCTGCTGCTGTTGCTGCTGCCTCTGTG
TTGTTGTTGCTCCTGTAGCTGCTGCCGCTGCTTCTGTCATCGTTGTTTGG
TCGTCGTTGTTGCTACTGGTATAGTGCTTGGTGGCTGGCGCCCATCTAAT
TCCCAAGAGGGTGACTTTTGATAGCTGTGCCTTGACACGGAAGGCTCGTG
AGCGTGTCACATGTCACAACACTCACCGAGAACGAGCGCACCCTCGGTTC
CTTGCGAGTTCACGTGATAAAAAGGGGGAGATTTTTTCTCAAAACTGACT
ACCTTTTGGTTGTGGTTGCTGTTGAAGCATATGGTGCCTTGTGCAACAGA
TTTGAGAACAAGCGAGAGAACAAGCGATCTGTTGTTGAATGGCAAGAGGG
CTGCGCAGCATCGCTTGACGAAAACGACAGCATGTGAAAAAAATAGCCTC
TCTAGCAAGGTAGGACCTAACCCTCTGCGGCTTCCCCACTTGCGTCCCCC
CCGCGGGCCTCCAGGAGAATCTGCAGAATCTACCGATAGGGGTACGACGG
ACAGGAGTATTAGCGGCATGGGAGTGACCAGCAGGACAAGCCCTAGAGAG
CAGGTGGGAGGAGGAGGAGGAGGAGGAGGAGGA back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig10792:1..3533- >mRNA_E-fasciculatus_F_contig10792.635.1 ID=mRNA_E-fasciculatus_F_contig10792.635.1|Name=mRNA_E-fasciculatus_F_contig10792.635.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1536bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10792:1..3533- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCGCTTTCTTTTTTTCTTGGTGGTTTCAGGCGCGAGTCCCACGCTGGA
GAACATGAAGGGGAGCACGGCTGTGATGCTCGCCAAGACCGAGACGGCGT
TGACGCTGCTGTGCCCCCTGCACTACTGCGCTGCGAGGGGCATGCTAGAC
AACCTTGTGGCGGAGGTCGCCAAGATGCGCTTTCTTTTTTTCTTGGTGGT
TTCAGGCGCGAGTCCCACGCTGGAGAACATGAAGGGGAGCACGGCTGTGA
TGCTCGCCAAGACCGAGACGGCGTTGACGCTGCTGTGCCCCCTGCACTAC
TGCGCTGCGAGGGGCATGCTAGACAACCTTGTGGCGGAGGTCGCCAAGGG
GAGGTCAGTCAACACCGTCGGTAGCGGGGGTGACACCCCCCTCCACGCCG
CCGCCACCACCGGTAACATCGACTCGACCCGCCTGCTGCTGGATCGAGGA
GCGGACCCGCTGCGAAGAAACGCCCACGGGGAAACCCCGCTGGACGTCGC
TCGACGGCACGGGCACGGCACCGGCGGCGGACGGGTCGCGGGGGGCGTCG
TCGGGGTGTTGGAAGGCGTTACGGCGGAGGCAGCGGCGGCGATAGCCAAG
AGGGAGGCGGAAGAAGCCGCCGCCAGGTCGGCGAACGGGGGTTATAGCGG
GGAGGTCAGTCAACACCGTCGGTAGCGGGGGTGACACCCCCCTCCACGCC
GCCGCCACCACCGGTAACATCGACTCGACCCGCCTGCTGCTGGATCGAGG
AGCGGACCCGCTGCGAAGAAACGCCCACGGGGAAACCCCGCTGGACGTCG
CTCGACGGCACGGGCACGGCACCGGCGGCGGACGGGTCGCGGGGGGCGTC
GTCGGGGTGTTGGAAGGCGTTACGGCGGAGGCAGCGGCGGCGATAGCCAA
GAGGGAGGCGGAAGAAGCCGCCGCCAGGTCGGCGAACGGGGGTTATAGCG
AGGGGGAATCCGTCGTGTACATGCGCAACGGAGAGGCGCACCCGGCAGTT
GTCATGAAGAGGGGGAATCCGTCGTGTACATGCGCAACGGAGAGGCGCAC
CCGGCAGTTGTCATGAAGGTCCACCAGGACGACGAAGAGCCATACTACAC
CGTGCGGGTTCACGAGACGGGAAGGGAGAGGCAGACGGATGCTAACCACC
TCGTGCGGAGCCTGCCGAAGAAGACGCCTCCGGGGGTAGGAGAACCCTCT
CCCGATGGGTCATCGTCATCACCGCCGTCGTGTTGTCCGGACGGCGACGG
AGGAGCACCACGAGAAGGTCCACCAGGACGACGAAGAGCCATACTACACC
GTGCGGGTTCACGAGACGGGAAGGGAGAGGCAGACGGATGCTAACCACCT
CGTGCGGAGCCTGCCGAAGAAGACGCCTCCGGGGGTAGGAGAACCCTCTC
CCGATGGGTCATCGTCATCACCGCCGTCGTGTTGTCCGGACGGCGACGGA
GGAGCACCACGAGAAGAGCAGGTGGGAGGAGGAGGAGGAGGAGGAGGAGG
AAGCAGGTGGGAGGAGGAGGAGGAGGAGGAGGAGGA back to top
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