mRNA_E-fasciculatus_F_contig10791.633.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig10791.633.1
Unique NamemRNA_E-fasciculatus_F_contig10791.633.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig10791.633.1 vs. uniprot
Match: D7G109_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G109_ECTSI)

HSP 1 Score: 79.7 bits (195), Expect = 3.200e-18
Identity = 43/68 (63.24%), Postives = 47/68 (69.12%), Query Frame = 1 
Query:    1 RGVRGGCSTYGNRRVDVGVVRQDMAALAER--------QQGGRACVSAFESKRRRADHDRMPPTFPAK 180
            +GV GGC+T+ NRRVD GVVRQD AA            QQ GRAC S  ESKRRRADH+RMPPT PAK
Sbjct:    8 KGVWGGCNTFVNRRVDAGVVRQDSAANGRAITAIRCFLQQRGRACASTLESKRRRADHERMPPTPPAK 75
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10791.633.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G109_ECTSI3.200e-1863.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10791contigE-fasciculatus_F_contig10791:1929..2162 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-22_001560.1
Exons2
Model size201
Cds size201
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927579.9217327-CDS-E-fasciculatus_F_contig10791:1928..20391622927579.9217327-CDS-E-fasciculatus_F_contig10791:1928..2039Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10791 1929..2039 -
1695995605.04113-CDS-E-fasciculatus_F_contig10791:1928..20391695995605.04113-CDS-E-fasciculatus_F_contig10791:1928..2039Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10791 1929..2039 -
1622927579.9388087-CDS-E-fasciculatus_F_contig10791:2072..21621622927579.9388087-CDS-E-fasciculatus_F_contig10791:2072..2162Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10791 2073..2162 -
1695995605.0577962-CDS-E-fasciculatus_F_contig10791:2072..21621695995605.0577962-CDS-E-fasciculatus_F_contig10791:2072..2162Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10791 2073..2162 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10791.633.1prot_E-fasciculatus_F_contig10791.633.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig10791 1929..2162 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig10791.633.1

>prot_E-fasciculatus_F_contig10791.633.1 ID=prot_E-fasciculatus_F_contig10791.633.1|Name=mRNA_E-fasciculatus_F_contig10791.633.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=67bp
RGVRGGCSTYGNRRVDVGVVRQDMAALAERQQGGRACVSAFESKRRRADH
DRMPPTFPAKHTCSRR*
back to top

mRNA from alignment at E-fasciculatus_F_contig10791:1929..2162-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig10791.633.1 ID=mRNA_E-fasciculatus_F_contig10791.633.1|Name=mRNA_E-fasciculatus_F_contig10791.633.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=234bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10791:1929..2162- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGGGGAGTGCGGGGCGGCTGTAGCACCTACGGGAATCGCAGGGTAGACGT
AGGTGTTGTACGGCAAGATATGGCAGCATTGGCAGAACGGGTAGACTGAC
CACTATTTACTAGATATTTATAGCAGCAGGGAGGGAGGGCGTGTGTGTCG
GCGTTTGAATCGAAACGGCGACGAGCAGATCACGATCGCATGCCTCCCAC
CTTCCCAGCTAAGCATACGTGCAGCCGCCGGTAG
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10791:1929..2162-

>mRNA_E-fasciculatus_F_contig10791.633.1 ID=mRNA_E-fasciculatus_F_contig10791.633.1|Name=mRNA_E-fasciculatus_F_contig10791.633.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=402bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10791:1929..2162- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGGGGAGTGCGGGGCGGCTGTAGCACCTACGGGAATCGCAGGGTAGACGT
AGGTGTTGTACGGCAAGATATGGCAGCATTGGCAGAACGGAGGGGAGTGC
GGGGCGGCTGTAGCACCTACGGGAATCGCAGGGTAGACGTAGGTGTTGTA
CGGCAAGATATGGCAGCATTGGCAGAACGGCAGCAGGGAGGGAGGGCGTG
TGTGTCGGCGTTTGAATCGAAACGGCGACGAGCAGATCACGATCGCATGC
CTCCCACCTTCCCAGCTAAGCATACGTGCAGCCGCCGGTAGCAGCAGGGA
GGGAGGGCGTGTGTGTCGGCGTTTGAATCGAAACGGCGACGAGCAGATCA
CGATCGCATGCCTCCCACCTTCCCAGCTAAGCATACGTGCAGCCGCCGGT
AG
back to top