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Homology
BLAST of mRNA_E-fasciculatus_F_contig10787.627.1 vs. uniprot
Match: D8LSH3_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSH3_ECTSI) HSP 1 Score: 115 bits (287), Expect = 4.040e-24 Identity = 197/362 (54.42%), Postives = 202/362 (55.80%), Query Frame = 1
Query: 7 PPQSQSSRREIVEWERRVSQVLSIDNMPRLALDSTGDSLASPEGAAAXXXXXXXXXXXXXXXXGELPQQQKKQSPGAANNNGADERDEHSRGVDPPVAVAGEAXXXXXXXAPVPGSNDGSSSKNEVPQGSPEAGGGLGVGEGEPAAKLKRENSSGGGVSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRVNQELKKERQLRKQYEEEKSAAEAEIARLKAALDAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGGR----REFPPAFVVSNVSGVSTASMSTMGSXXXXAGGV--------ASRRNSGRDIGVIGEGSGCGXXXXXXXXX-VEEVLSYAGPG 1053
P QSQ SRREIVEWERRVSQVLSID++PR ALDSTGDSLASPE AA XXXXXXX XXXXXXX LGV E E XX X RV+Q+LKKERQLRKQY+EEKS AEAEIARLKAALDAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX REFPPAFVVSNVSGVSTASMSTMGS GG ASRRNSGRD GVIG G XXXXXXXXX VEEVLSY GPG
Sbjct: 567 PLQSQESRREIVEWERRVSQVLSIDSIPRHALDSTGDSLASPEDPAAVAGSGAAADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------LGVREAEXXXXXXXXXXXXXXXXXXXNESIGSKGRKSKGHRRRSGEGGXGRDRDGKERVSQDLKKERQLRKQYQEEKSTAEAEIARLKAALDAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXREFPPAFVVSNVSGVSTASMSTMGS----TGGAXXXXXXXXASRRNSGRDNGVIGSGXXXXXXXXXXXXXXVEEVLSYTGPG 917
BLAST of mRNA_E-fasciculatus_F_contig10787.627.1 vs. uniprot
Match: A0A6H5L8P8_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8P8_9PHAE) HSP 1 Score: 81.6 bits (200), Expect = 5.720e-13 Identity = 71/111 (63.96%), Postives = 76/111 (68.47%), Query Frame = 1
Query: 373 KNEVPQGSP-EAGGGLGVGEGE-PAAKLKRENSSGGGVSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRVNQELKKERQLRKQYEEEKSAAEAEIARLKAALDAAT 699
KN+VP+GSP EAGGGLGV EGE AA +KRENS + S XXXXXXXXXX RV+ ELKKERQLRKQYEEEKS AEAEIARLKAALDAAT
Sbjct: 1257 KNDVPRGSPPEAGGGLGVSEGERAAAAIKRENSGNESIGSKSRKSKGHRRRSXXXXXXXXXXGKE--------RVSLELKKERQLRKQYEEEKSTAEAEIARLKAALDAAT 1359
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 120.9 |
| Seed ortholog evalue | 1.3e-24 |
| Seed eggNOG ortholog | 2880.D8LSH3 |
| EggNOG free text desc. | regulation of response to stimulus |
| EggNOG OGs | COG4886@1,KOG0619@2759 |
| COG Functional cat. | S |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Hectar predicted targeting category | other localisation |
| Exons | 4 |
| Model size | 1138 |
| Cds size | 1137 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig10787.627.1 >prot_E-fasciculatus_F_contig10787.627.1 ID=prot_E-fasciculatus_F_contig10787.627.1|Name=mRNA_E-fasciculatus_F_contig10787.627.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=379bp
SSPPQSQSSRREIVEWERRVSQVLSIDNMPRLALDSTGDSLASPEGAAAA
AADTATATGATGAGAGELPQQQKKQSPGAANNNGADERDEHSRGVDPPVA
VAGEAAAAAVVVAPVPGSNDGSSSKNEVPQGSPEAGGGLGVGEGEPAAKL
KRENSSGGGVSSGGSESVGRKGRKSKGHRRRSGERGSSKDRDGKERVNQE
LKKERQLRKQYEEEKSAAEAEIARLKAALDAATTTTTTSVTATSAATRAL
PAADKKPPPATGEAENGAGGGRRLSGGRREFPPAFVVSNVSGVSTASMST
MGSTGGAAGGVASRRNSGRDIGVIGEGSGCGGGGGGGGGGVEEVLSYAGP
GGAGAMSSKKSSRRSTLVEAVGLVAAADG back to topmRNA from alignment at E-fasciculatus_F_contig10787:2032..4483+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig10787.627.1 ID=mRNA_E-fasciculatus_F_contig10787.627.1|Name=mRNA_E-fasciculatus_F_contig10787.627.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2452bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10787:2032..4483+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGCAGCCCTCCGCAGAGTCAATCGTCGCGGCGGGAGATCGTGGAGTGGGA
GGTGGGGGGCGACCTTTGTCTGTTTTTGACGAACCGTATCGTTGTGGTGT
GTATTGTACGTGTGCGACCCTCTCGTTTGGTTTTGTTCCTTTGTTCCCAA
GAAAGACAGCAGTGGGGTTGTGGTATTGTTTCGAATGCGCCTGTTCGTTT
GTTCGCGACCTGTGGTTGTGCCGGGGTCTTGCTTTTGTAAGTGTAATACA
ATAGTTGAAGGCAAGGGCAAGATCTTGGCTGGAATCAAACCAAATTTATG
GTTGGTTTGGCTGGTCTCGAAGGTGGCTGGAACGCCAAGGGATTCGTTTC
TCTGCGAAAAGAACATGACTGCATCAGTGTCGGCGGCAACAGCAACTGCA
CTGAACCCATGGTTGTTGCAACAGCTGATGTTTTTTTTATTGTTGTTGTT
TTTAGCGCGTGTACTACGGGTGTTCGCCTTTGCGTTCTACTTATGTGTCG
CTTTGCTGCTGTTTCCAACTGCTCAAGCTTTTGCTGCCCACGCCGACCCT
ACTGCTAAACTACTACCACCCCGCCCCGCCCCACCCCCCGGCACCCGGGC
GTATGTGGAGTTGCGAAAACCACGCTCGTCAATTTGTCAATCCTTGCAAT
TTAGCAAAATAGTGCTTAACATAGAAATTACTGCTGTTGTTTTGCCGCAC
GCTACACATAAAAACATGACCGAATGGATGGTGCGCGACGACCGACAGCG
ACGGGTGTCGCAGGTGCTGTCGATCGACAACATGCCCCGCCTGGCCTTGG
ACTCGACGGGAGATTCCTTGGCGTCTCCCGAAGGCGCCGCCGCGGCTGCC
GCCGACACCGCCACTGCTACCGGTGCCACCGGTGCAGGGGCCGGCGAGCT
CCCACAGCAACAAAAGAAGCAGAGTCCGGGGGCTGCGGTGAGGGAAGGGA
GGGGGGAGGAGATAACCTAGCCGACAGCTGTTTTTAGTGACTTTGTGTGT
TGCCTTGTCTTGGTGATGCGTGATTTCTGAGTTTCCCATACGAGTACTGC
TTTACCACCGAATAATTGTGCAGTTATAAGTACAACCCGCACACGCGTGT
ACCCTGCAAAGGCGGACGCCTGCCGCTGCAAAGCTTTTTTACCGGAAACC
CGCCGCCGCGCTGATTCACTGCGAAACAACTGCCAGAACAACAACGGAGC
AGATGAAAGGGACGAGCACTCTCGGGGCGTCGACCCTCCGGTGGCGGTGG
CGGGGGAAGCCGCCGCCGCCGCCGTTGTTGTTGCGCCGGTCCCGGGGAGC
AACGACGGGAGCAGCAGCAAGAACGAAGTGCCTCAGGGCTCGCCGGAGGC
GGGCGGGGGGCTAGGGGTAGGAGAAGGGGAGCCGGCGGCGAAGCTCAAGC
GAGAGAACAGCAGCGGCGGTGGGGTCAGCAGCGGCGGGAGCGAGAGCGTT
GGCCGCAAGGGCAGGAAGTCGAAGGGGCACAGGAGGAGAAGCGGCGAGCG
CGGGAGCAGCAAGGACCGCGATGGGAAGGAGAGGGTTAATCAGGAGCTAA
AGAAAGAGGTGAGCTGTTCGGTTGGTCGAGTTCCTTGGTCCCCCCCCCCC
GTCGGGGTCTGTTATCTTTGTCTATGCGCCTCGCAAGCCGCAGCATACAG
CAGTTAGTCCACGAAAAAAGCCCTGCGTCCTGAACACGTCGACGTGGATT
GTGCTGTGCGTGACGTCTGCTTGACGTGATGTCATAACTTTTGCAGCCCG
TCCCTGCCCGCCGGGGGCCCTGTACGAAGCACGTACACGCGGCCGGACGC
CTCACTGCCTCCACCGCCACCACCGCCACCTCGCCTCGCTCTTCAATCAT
GACCTCTCTACTAAGCTCTTTACTCATCGCCTCTCAACCAACTCCCCCCC
CCCCCCCCCCTTTTTTTTTTTTCCAGCGCCAACTTCGCAAGCAGTACGAG
GAGGAAAAATCCGCCGCGGAGGCCGAGATAGCCCGCCTCAAAGCGGCGCT
CGATGCCGCTACCACAACAACAACGACGAGCGTGACGGCCACGTCAGCCG
CAACGAGAGCCCTCCCCGCGGCCGACAAGAAGCCGCCCCCGGCGACCGGA
GAAGCCGAGAACGGCGCCGGCGGGGGACGGAGGTTGTCGGGCGGGCGGCG
GGAGTTCCCCCCGGCGTTCGTGGTCTCAAACGTGTCCGGGGTGTCGACGG
CGTCGATGTCGACGATGGGCTCGACGGGCGGCGCGGCAGGCGGCGTAGCT
TCGAGGAGAAATAGCGGCCGCGACATTGGGGTCATCGGCGAGGGCAGCGG
ATGCGGCGGCGGCGGCGGCGGCGGCGGCGGTGGGGTGGAAGAGGTGCTTT
CGTACGCCGGTCCCGGGGGGGCAGGGGCGATGTCGTCGAAGAAGAGCAGC
AGGAGGTCGACGCTGGTGGAGGCGGTAGGGTTGGTGGCGGCGGCGGACGG
GA back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig10787:2032..4483+ >mRNA_E-fasciculatus_F_contig10787.627.1 ID=mRNA_E-fasciculatus_F_contig10787.627.1|Name=mRNA_E-fasciculatus_F_contig10787.627.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2274bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10787:2032..4483+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGCAGCCCTCCGCAGAGTCAATCGTCGCGGCGGGAGATCGTGGAGTGGGA
GAGCAGCCCTCCGCAGAGTCAATCGTCGCGGCGGGAGATCGTGGAGTGGG
AGCGACGGGTGTCGCAGGTGCTGTCGATCGACAACATGCCCCGCCTGGCC
TTGGACTCGACGGGAGATTCCTTGGCGTCTCCCGAAGGCGCCGCCGCGGC
TGCCGCCGACACCGCCACTGCTACCGGTGCCACCGGTGCAGGGGCCGGCG
AGCTCCCACAGCAACAAAAGAAGCAGAGTCCGGGGGCTGCGCGACGGGTG
TCGCAGGTGCTGTCGATCGACAACATGCCCCGCCTGGCCTTGGACTCGAC
GGGAGATTCCTTGGCGTCTCCCGAAGGCGCCGCCGCGGCTGCCGCCGACA
CCGCCACTGCTACCGGTGCCACCGGTGCAGGGGCCGGCGAGCTCCCACAG
CAACAAAAGAAGCAGAGTCCGGGGGCTGCGAACAACAACGGAGCAGATGA
AAGGGACGAGCACTCTCGGGGCGTCGACCCTCCGGTGGCGGTGGCGGGGG
AAGCCGCCGCCGCCGCCGTTGTTGTTGCGCCGGTCCCGGGGAGCAACGAC
GGGAGCAGCAGCAAGAACGAAGTGCCTCAGGGCTCGCCGGAGGCGGGCGG
GGGGCTAGGGGTAGGAGAAGGGGAGCCGGCGGCGAAGCTCAAGCGAGAGA
ACAGCAGCGGCGGTGGGGTCAGCAGCGGCGGGAGCGAGAGCGTTGGCCGC
AAGGGCAGGAAGTCGAAGGGGCACAGGAGGAGAAGCGGCGAGCGCGGGAG
CAGCAAGGACCGCGATGGGAAGGAGAGGGTTAATCAGGAGCTAAAGAAAG
AGAACAACAACGGAGCAGATGAAAGGGACGAGCACTCTCGGGGCGTCGAC
CCTCCGGTGGCGGTGGCGGGGGAAGCCGCCGCCGCCGCCGTTGTTGTTGC
GCCGGTCCCGGGGAGCAACGACGGGAGCAGCAGCAAGAACGAAGTGCCTC
AGGGCTCGCCGGAGGCGGGCGGGGGGCTAGGGGTAGGAGAAGGGGAGCCG
GCGGCGAAGCTCAAGCGAGAGAACAGCAGCGGCGGTGGGGTCAGCAGCGG
CGGGAGCGAGAGCGTTGGCCGCAAGGGCAGGAAGTCGAAGGGGCACAGGA
GGAGAAGCGGCGAGCGCGGGAGCAGCAAGGACCGCGATGGGAAGGAGAGG
GTTAATCAGGAGCTAAAGAAAGAGCGCCAACTTCGCAAGCAGTACGAGGA
GGAAAAATCCGCCGCGGAGGCCGAGATAGCCCGCCTCAAAGCGGCGCTCG
ATGCCGCTACCACAACAACAACGACGAGCGTGACGGCCACGTCAGCCGCA
ACGAGAGCCCTCCCCGCGGCCGACAAGAAGCCGCCCCCGGCGACCGGAGA
AGCCGAGAACGGCGCCGGCGGGGGACGGAGGTTGTCGGGCGGGCGGCGGG
AGTTCCCCCCGGCGTTCGTGGTCTCAAACGTGTCCGGGGTGTCGACGGCG
TCGATGTCGACGATGGGCTCGACGGGCGGCGCGGCAGGCGGCGTAGCTTC
GAGGAGAAATAGCGGCCGCGACATTGGGGTCATCGGCGAGGGCAGCGGAT
GCGGCGGCGGCGGCGGCGGCGGCGGCGGTGGGGTGGAAGAGGTGCTTTCG
TACGCCGGTCCCGGGGGGGCAGGGGCGATGTCGTCGAAGAAGAGCAGCAG
GAGGTCGACGCTGGTGGAGGCGGTAGGGTTGGTGGCGGCGGCGGACGGGC
GCCAACTTCGCAAGCAGTACGAGGAGGAAAAATCCGCCGCGGAGGCCGAG
ATAGCCCGCCTCAAAGCGGCGCTCGATGCCGCTACCACAACAACAACGAC
GAGCGTGACGGCCACGTCAGCCGCAACGAGAGCCCTCCCCGCGGCCGACA
AGAAGCCGCCCCCGGCGACCGGAGAAGCCGAGAACGGCGCCGGCGGGGGA
CGGAGGTTGTCGGGCGGGCGGCGGGAGTTCCCCCCGGCGTTCGTGGTCTC
AAACGTGTCCGGGGTGTCGACGGCGTCGATGTCGACGATGGGCTCGACGG
GCGGCGCGGCAGGCGGCGTAGCTTCGAGGAGAAATAGCGGCCGCGACATT
GGGGTCATCGGCGAGGGCAGCGGATGCGGCGGCGGCGGCGGCGGCGGCGG
CGGTGGGGTGGAAGAGGTGCTTTCGTACGCCGGTCCCGGGGGGGCAGGGG
CGATGTCGTCGAAGAAGAGCAGCAGGAGGTCGACGCTGGTGGAGGCGGTA
GGGTTGGTGGCGGCGGCGGACGGG back to top
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