mRNA_E-fasciculatus_F_contig10787.626.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig10787.626.1
Unique NamemRNA_E-fasciculatus_F_contig10787.626.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig10787.626.1 vs. uniprot
Match: D8LSH3_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSH3_ECTSI)

HSP 1 Score: 124 bits (312), Expect = 1.540e-28
Identity = 72/79 (91.14%), Postives = 75/79 (94.94%), Query Frame = 2 
Query:   11 RGSANSQMLMSTLLREAQEKEKTMQREMEEMRVREQTMRGELVNGLAGARKIYAQLKQGKQREQELRATNSILQAKIAS 247
            RGSA+SQML+STLLREAQ KEK M REMEEMR REQTMRGELVNGLAGARKI+AQLKQGKQREQELRATNSILQAKIAS
Sbjct:  262 RGSADSQMLLSTLLREAQAKEKAMLREMEEMRAREQTMRGELVNGLAGARKIFAQLKQGKQREQELRATNSILQAKIAS 340
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BLAST of mRNA_E-fasciculatus_F_contig10787.626.1 vs. uniprot
Match: A0A6H5L8P8_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8P8_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 1.870e-27
Identity = 70/80 (87.50%), Postives = 75/80 (93.75%), Query Frame = 2 
Query:   11 RGSANSQMLMSTLLREAQEKEKTMQREMEEMRVREQTMRGELVNGLAGARKIYAQLKQGKQREQELRATNSILQAKIASS 250
            RGSA+SQML+ST LREA+ KEK M REMEEMR REQTMRGELVNGLAGARKIYAQLK+G+QREQELRATNSILQAKIASS
Sbjct:  844 RGSADSQMLLSTRLREARAKEKAMLREMEEMRAREQTMRGELVNGLAGARKIYAQLKEGRQREQELRATNSILQAKIASS 923
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10787.626.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LSH3_ECTSI1.540e-2891.14Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5L8P8_9PHAE1.870e-2787.50Protein kinase domain-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10787contigE-fasciculatus_F_contig10787:45..1953 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score115.5
Seed ortholog evalue3.6e-23
Seed eggNOG ortholog2880.D8LSH3
EggNOG free text desc.regulation of response to stimulus
EggNOG OGsCOG4886@1,KOG0619@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size809
Cds size777
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10787.626.1prot_E-fasciculatus_F_contig10787.626.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig10787 76..1953 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927579.080187-UTR-E-fasciculatus_F_contig10787:44..751622927579.080187-UTR-E-fasciculatus_F_contig10787:44..75Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10787 45..75 +
1695995604.600014-UTR-E-fasciculatus_F_contig10787:44..751695995604.600014-UTR-E-fasciculatus_F_contig10787:44..75Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10787 45..75 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927579.0916958-CDS-E-fasciculatus_F_contig10787:75..1411622927579.0916958-CDS-E-fasciculatus_F_contig10787:75..141Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10787 76..141 +
1695995604.6113548-CDS-E-fasciculatus_F_contig10787:75..1411695995604.6113548-CDS-E-fasciculatus_F_contig10787:75..141Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10787 76..141 +
1622927579.1058536-CDS-E-fasciculatus_F_contig10787:595..7811622927579.1058536-CDS-E-fasciculatus_F_contig10787:595..781Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10787 596..781 +
1695995604.6199799-CDS-E-fasciculatus_F_contig10787:595..7811695995604.6199799-CDS-E-fasciculatus_F_contig10787:595..781Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10787 596..781 +
1622927579.11992-CDS-E-fasciculatus_F_contig10787:1428..19531622927579.11992-CDS-E-fasciculatus_F_contig10787:1428..1953Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10787 1429..1953 +
1695995604.6290057-CDS-E-fasciculatus_F_contig10787:1428..19531695995604.6290057-CDS-E-fasciculatus_F_contig10787:1428..1953Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10787 1429..1953 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig10787.626.1

>prot_E-fasciculatus_F_contig10787.626.1 ID=prot_E-fasciculatus_F_contig10787.626.1|Name=mRNA_E-fasciculatus_F_contig10787.626.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=259bp
MLMSTLLREAQEKEKTMQREMEEMRVREQTMRGELVNGLAGARKIYAQLK
QGKQREQELRATNSILQAKIASSSSSSTGDGERQGGGATAPRTPEKAPSS
SKNAAAATTATAASGAESMPPPSPPSYSSIVSSSCAAGTGGGGGGGDGGV
GGGLAANSSSSSRPASPPPAMTTPRGAVPFKPYATRPVATAAAAAAATTA
AEAAGSSGVETAVEDDNQRQATAGLGRRDDGGSGGDLAASATLVKDKVGA
VNGEQSSEV
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mRNA from alignment at E-fasciculatus_F_contig10787:45..1953+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig10787.626.1 ID=mRNA_E-fasciculatus_F_contig10787.626.1|Name=mRNA_E-fasciculatus_F_contig10787.626.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1909bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10787:45..1953+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGGCGGGGGGAGAGGTTCCGCCAACTCGCAGATGTTGATGTCGACCCTCC
TGCGGGAGGCCCAGGAGAAAGAGAAGACCATGCAAAGGGAGATGGAGGTA
AGTTAGGGTGTCGCGGTCTTCCTTGCTCCTGTTGTTGTTGATTTGCGGTC
GTTGGTTGTTCGGCGGGTGTGTGCGCGGTGGTTGTGCGCGGCACAGCGGC
CGTTCGCCTTGTTTTGTATGTCTGTGGCGAACCACCGAGGTTAACCCCCA
CCGCGCGCGCCCTTGCTGTGGTGCGAAAGAAAATCACATTATTAATAGTA
TTAGAATGACTACAACAACGACAAGGGGAGCAACAACCAAAACCAACAAA
TATGAACATCCAACAACAAATAATACCAACAACATCTGAGTTTAGGCATA
ATTTTTTTACGGTTTCTCCGCCGAAAAGCAGCACAAGATGTTGGCCGAAC
GATGTTCGCCGCCGCCCAACACACACGAAAACGAAGATTAAAAACTACCA
CACGTTTTCTCAAAAAAGCACACTATTTCTGTCACCCAAAAAAAAAAACA
GGAAATGCGCGTGAGGGAGCAGACGATGCGCGGGGAGCTGGTGAACGGCC
TGGCCGGGGCCCGCAAGATTTACGCCCAGCTCAAGCAAGGGAAGCAGCGG
GAGCAGGAGCTTCGTGCGACGAACTCGATCCTCCAAGCCAAGATCGCGTC
GTCCTCCTCGTCCTCGACCGGGGACGGGGAGAGACAAGTGAGATGAGCCG
TCGGGGGGGGGGAGGTTGGCTGACAGGGGAGGGGCTAACTCTCTTGTATC
GTATGACTGACCACTTAGTTGTTTGAAAGTGTACAATCTCGGGAAGACTT
GCCCGTTCGAGACCGATCTCAATCGAACGGGTGTGTTGAATGTTGATGAG
AATAGTTGCTGTGGTTTGTCGTTGTTGTTGTTGTTGTTGCTGTTGCTGTT
GTTGTTGTTGTTGTTGCCGTCGTCTTCTGTTGACCTTCTATCACGTTCTG
TGTTGTTTTCTTGTCGTATCTATCGTAGTCGTATCTATCGTAGTCGTATC
GCCAGTCTGTTCACCTTTCGGTACTGCTATACATGTGTGGCGCAATACCT
TTTCGGAGCCGTACCAGACGAAGACCACCGTTTGTTCCTCCTTCCGCCTG
CATTTCTTGCCTCCATTTTCCTTACGCGAGAAGGGTACAATAGTAGCCCC
TTCCACTCACTGCTACGCGCACTCGCAGCTTTCTCCACGCCGGAGAGCAA
ACGCGACACTTTCGCATCGTCGTTCTCGCTTCCGACGAATCACCGCCTCC
TGCGGCACCAATCGCACGTTCGTTCGACCAACACAAAACGACACCCCCCT
GACTCTTTTTTTCCGCGTGTGCTTGTTCGTGCAGGGAGGCGGAGCGACGG
CTCCTCGGACACCCGAGAAAGCGCCGTCCTCTTCCAAGAACGCTGCAGCG
GCGACGACAGCAACCGCAGCAAGCGGCGCCGAAAGCATGCCCCCTCCCTC
CCCCCCCTCCTATTCCTCCATCGTCTCCTCCTCGTGCGCTGCGGGCACCG
GCGGCGGCGGCGGCGGCGGAGACGGAGGCGTAGGCGGCGGCCTTGCCGCA
AATTCTTCTTCCTCCTCCCGCCCAGCGTCTCCGCCCCCGGCCATGACCAC
ACCTCGTGGTGCGGTCCCGTTTAAGCCGTACGCCACCAGACCCGTGGCGA
CAGCAGCAGCAGCTGCTGCTGCGACGACCGCGGCCGAGGCGGCAGGTAGC
AGTGGTGTCGAGACGGCGGTCGAAGACGACAACCAGAGGCAGGCGACGGC
GGGGTTAGGCAGGCGCGACGACGGCGGCAGCGGTGGCGACTTGGCGGCAT
CGGCTACCCTCGTGAAGGACAAAGTGGGGGCGGTTAACGGGGAACAGTCA
TCGGAAGTG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10787:45..1953+

>mRNA_E-fasciculatus_F_contig10787.626.1 ID=mRNA_E-fasciculatus_F_contig10787.626.1|Name=mRNA_E-fasciculatus_F_contig10787.626.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1554bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10787:45..1953+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTTGATGTCGACCCTCCTGCGGGAGGCCCAGGAGAAAGAGAAGACCAT
GCAAAGGGAGATGGAGATGTTGATGTCGACCCTCCTGCGGGAGGCCCAGG
AGAAAGAGAAGACCATGCAAAGGGAGATGGAGGAAATGCGCGTGAGGGAG
CAGACGATGCGCGGGGAGCTGGTGAACGGCCTGGCCGGGGCCCGCAAGAT
TTACGCCCAGCTCAAGCAAGGGAAGCAGCGGGAGCAGGAGCTTCGTGCGA
CGAACTCGATCCTCCAAGCCAAGATCGCGTCGTCCTCCTCGTCCTCGACC
GGGGACGGGGAGAGACAAGAAATGCGCGTGAGGGAGCAGACGATGCGCGG
GGAGCTGGTGAACGGCCTGGCCGGGGCCCGCAAGATTTACGCCCAGCTCA
AGCAAGGGAAGCAGCGGGAGCAGGAGCTTCGTGCGACGAACTCGATCCTC
CAAGCCAAGATCGCGTCGTCCTCCTCGTCCTCGACCGGGGACGGGGAGAG
ACAAGGAGGCGGAGCGACGGCTCCTCGGACACCCGAGAAAGCGCCGTCCT
CTTCCAAGAACGCTGCAGCGGCGACGACAGCAACCGCAGCAAGCGGCGCC
GAAAGCATGCCCCCTCCCTCCCCCCCCTCCTATTCCTCCATCGTCTCCTC
CTCGTGCGCTGCGGGCACCGGCGGCGGCGGCGGCGGCGGAGACGGAGGCG
TAGGCGGCGGCCTTGCCGCAAATTCTTCTTCCTCCTCCCGCCCAGCGTCT
CCGCCCCCGGCCATGACCACACCTCGTGGTGCGGTCCCGTTTAAGCCGTA
CGCCACCAGACCCGTGGCGACAGCAGCAGCAGCTGCTGCTGCGACGACCG
CGGCCGAGGCGGCAGGTAGCAGTGGTGTCGAGACGGCGGTCGAAGACGAC
AACCAGAGGCAGGCGACGGCGGGGTTAGGCAGGCGCGACGACGGCGGCAG
CGGTGGCGACTTGGCGGCATCGGCTACCCTCGTGAAGGACAAAGTGGGGG
CGGTTAACGGGGAACAGTCATCGGAAGTGGGAGGCGGAGCGACGGCTCCT
CGGACACCCGAGAAAGCGCCGTCCTCTTCCAAGAACGCTGCAGCGGCGAC
GACAGCAACCGCAGCAAGCGGCGCCGAAAGCATGCCCCCTCCCTCCCCCC
CCTCCTATTCCTCCATCGTCTCCTCCTCGTGCGCTGCGGGCACCGGCGGC
GGCGGCGGCGGCGGAGACGGAGGCGTAGGCGGCGGCCTTGCCGCAAATTC
TTCTTCCTCCTCCCGCCCAGCGTCTCCGCCCCCGGCCATGACCACACCTC
GTGGTGCGGTCCCGTTTAAGCCGTACGCCACCAGACCCGTGGCGACAGCA
GCAGCAGCTGCTGCTGCGACGACCGCGGCCGAGGCGGCAGGTAGCAGTGG
TGTCGAGACGGCGGTCGAAGACGACAACCAGAGGCAGGCGACGGCGGGGT
TAGGCAGGCGCGACGACGGCGGCAGCGGTGGCGACTTGGCGGCATCGGCT
ACCCTCGTGAAGGACAAAGTGGGGGCGGTTAACGGGGAACAGTCATCGGA
AGTG
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