mRNA_E-fasciculatus_F_contig10779.618.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig10779.618.1
Unique NamemRNA_E-fasciculatus_F_contig10779.618.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig10779.618.1 vs. uniprot
Match: A0A6H5KU09_9PHAE (Peroxin-7 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU09_9PHAE)

HSP 1 Score: 158 bits (399), Expect = 3.480e-45
Identity = 82/114 (71.93%), Postives = 87/114 (76.32%), Query Frame = 1 
Query:    1 RKNRQPLSVMLEHRYAVRRLRFSPHRTGVLATASYDTSAILWDTK-RRPPAGTGVXXXXXXXXXXXXXXXL---LLDRCAGHTEFVAGVAFSLFEPRLMATCAWDRRLCFWRSL 330
            R+ R PLSVMLEHRYAV+RLRFSPH++GVLATASYDTS ILWDTK   PPAGTG+                   LLDRC GHTEFVAGVAFSLFEPRLMATCAWDRRLC WRSL
Sbjct:  234 RQPRVPLSVMLEHRYAVKRLRFSPHQSGVLATASYDTSVILWDTKITPPPAGTGMFPLAGEGRGGGGHGRRSPRLLDRCVGHTEFVAGVAFSLFEPRLMATCAWDRRLCLWRSL 347
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BLAST of mRNA_E-fasciculatus_F_contig10779.618.1 vs. uniprot
Match: D7FIF0_ECTSI (Peroxin-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIF0_ECTSI)

HSP 1 Score: 90.1 bits (222), Expect = 4.090e-19
Identity = 39/40 (97.50%), Postives = 39/40 (97.50%), Query Frame = 1 
Query:  211 LLDRCAGHTEFVAGVAFSLFEPRLMATCAWDRRLCFWRSL 330
            LLDRC GHTEFVAGVAFSLFEPRLMATCAWDRRLCFWRSL
Sbjct:  321 LLDRCVGHTEFVAGVAFSLFEPRLMATCAWDRRLCFWRSL 360
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BLAST of mRNA_E-fasciculatus_F_contig10779.618.1 vs. uniprot
Match: A0A177VY82_9BASI (Peroxin-7 n=2 Tax=Tilletia TaxID=13289 RepID=A0A177VY82_9BASI)

HSP 1 Score: 80.5 bits (197), Expect = 1.920e-15
Identity = 43/104 (41.35%), Postives = 57/104 (54.81%), Query Frame = 1 
Query:   16 PLSVMLEHRYAVRRLRFSPHRTGVLATASYDTSAILWDTKRRPPAGTGVXXXXXXXXXXXXXXXLLLDRCAGHTEFVAGVAFSLFEPRLMATCAWDRRLCFWRS 327
            P+     H YAVR + FSPH + +LA+ASYD SA +WDT        G                 ++ R   HTEFVAGV +SLF+P L+A+CAWD  +  WR+
Sbjct:  337 PVPHPTAHAYAVRHVAFSPHASNILASASYDMSARVWDTVGPQNRMMGSASSMR-----------MVGRHEAHTEFVAGVEWSLFQPGLVASCAWDSEVHLWRA 429
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BLAST of mRNA_E-fasciculatus_F_contig10779.618.1 vs. uniprot
Match: A0A177TCZ7_9BASI (Peroxin-7 n=2 Tax=Tilletia TaxID=13289 RepID=A0A177TCZ7_9BASI)

HSP 1 Score: 80.1 bits (196), Expect = 2.600e-15
Identity = 43/104 (41.35%), Postives = 56/104 (53.85%), Query Frame = 1 
Query:   16 PLSVMLEHRYAVRRLRFSPHRTGVLATASYDTSAILWDTKRRPPAGTGVXXXXXXXXXXXXXXXLLLDRCAGHTEFVAGVAFSLFEPRLMATCAWDRRLCFWRS 327
            P+     H YA+R + FSPH   +LA+ASYD SA +WDT        G                 L +R   HTEFVAGV +SLF+P L+A+CAWD  +  WR+
Sbjct:  333 PVPHPTAHAYAIRHVAFSPHAPNLLASASYDMSARVWDTVGPQVKMVGAASTMR-----------LRERHDAHTEFVAGVEWSLFQPGLVASCAWDSEVHLWRA 425
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BLAST of mRNA_E-fasciculatus_F_contig10779.618.1 vs. uniprot
Match: A0A4Y7QFZ4_9AGAM (Peroxin-7 n=1 Tax=Rickenella mellea TaxID=50990 RepID=A0A4Y7QFZ4_9AGAM)

HSP 1 Score: 78.6 bits (192), Expect = 8.180e-15
Identity = 41/104 (39.42%), Postives = 58/104 (55.77%), Query Frame = 1 
Query:   16 PLSVMLEHRYAVRRLRFSPHRTGVLATASYDTSAILWDTKRRPPAGTGVXXXXXXXXXXXXXXXLLLDRCAGHTEFVAGVAFSLFEPRLMATCAWDRRLCFWRS 327
            P + +  H YAVR++++SPHR  VLA+ASYD +  +W T   PP+                    LL     HTEFV G A+SL+E  ++A+CAWD R+C +R 
Sbjct:  302 PTTQLSGHEYAVRKVQWSPHRADVLASASYDMTCRVWSTSPSPPS--------------PQHQNPLLAIHDTHTEFVVGCAWSLYEDGVLASCAWDGRVCVYRG 391
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BLAST of mRNA_E-fasciculatus_F_contig10779.618.1 vs. uniprot
Match: A0A316YY66_9BASI (Peroxin-7 n=1 Tax=Acaromyces ingoldii TaxID=215250 RepID=A0A316YY66_9BASI)

HSP 1 Score: 76.3 bits (186), Expect = 5.700e-14
Identity = 40/102 (39.22%), Postives = 53/102 (51.96%), Query Frame = 1 
Query:   22 SVMLEHRYAVRRLRFSPHRTGVLATASYDTSAILWDTKRRPPAGTGVXXXXXXXXXXXXXXXLLLDRCAGHTEFVAGVAFSLFEPRLMATCAWDRRLCFWRS 327
            ++M+ H YAVR++ +SPHR  VLA+ASYD SA +WD         G                        HTEFV G+A+SLF+  L+ATCAWD     W +
Sbjct:  307 AIMMGHEYAVRKVAWSPHRPNVLASASYDMSARVWDVDAGEKMAAGPLVGAGPRSLTAVHD--------AHTEFVVGLAWSLFQEGLVATCAWDCEAHLWAA 400
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BLAST of mRNA_E-fasciculatus_F_contig10779.618.1 vs. uniprot
Match: A0A0K3CGN7_RHOTO (Peroxin-7 n=4 Tax=Rhodosporidium toruloides TaxID=5286 RepID=A0A0K3CGN7_RHOTO)

HSP 1 Score: 74.7 bits (182), Expect = 1.860e-13
Identity = 39/102 (38.24%), Postives = 57/102 (55.88%), Query Frame = 1 
Query:   19 LSVMLEHRYAVRRLRFSPHRTGVLATASYDTSAILWDTKRRPPAGTGVXXXXXXXXXXXXXXXLLLDRCAGHTEFVAGVAFSLFEPRLMATCAWDRRLCFWR 324
            ++ +L H YAVRR+ +SPH + +LAT SYD ++ +W        G G                 + DR   HTEFV GVA+SL+E  L+A+C+WD+ +  WR
Sbjct:  279 IATLLGHEYAVRRVAWSPHSSALLATGSYDMTSRIWSVAAA--GGGGQVGGFSAQGGMGARIERVWDR---HTEFVVGVAWSLYEEGLVASCSWDQEVHLWR 375
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BLAST of mRNA_E-fasciculatus_F_contig10779.618.1 vs. uniprot
Match: A0A317XJ83_9BASI (Peroxin-7 n=1 Tax=Testicularia cyperi TaxID=1882483 RepID=A0A317XJ83_9BASI)

HSP 1 Score: 72.8 bits (177), Expect = 8.550e-13
Identity = 41/105 (39.05%), Postives = 56/105 (53.33%), Query Frame = 1 
Query:   16 PLSVMLEHRYAVRRLRFSPHRTGVLATASYDTSAILWDTKRRPPAGTGVXXXXXXXXXXXXXXXLLLDRCAGHTEFVAGVAFSLFEPRLMATCAWDRRLCFWRSL 330
            PL+ ML H YA+RR+ +SPH   +LATASYD +A +WDT     A                    + D    HTEFV G+++SLF+  L+A+ AWD     W +L
Sbjct:  260 PLAAMLGHEYAIRRVAWSPHSPHLLATASYDMTARVWDTDA---AARSTVSGLPGAAAQATSMRRVHD---AHTEFVVGISWSLFQEGLVASTAWDCETHLWGAL 358
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BLAST of mRNA_E-fasciculatus_F_contig10779.618.1 vs. uniprot
Match: A0A316UUF6_9BASI (Peroxin-7 n=1 Tax=Jaminaea rosea TaxID=1569628 RepID=A0A316UUF6_9BASI)

HSP 1 Score: 72.8 bits (177), Expect = 9.100e-13
Identity = 39/105 (37.14%), Postives = 55/105 (52.38%), Query Frame = 1 
Query:   13 QPLSVMLEHRYAVRRLRFSPHRTGVLATASYDTSAILWDTKRRPPAGTGVXXXXXXXXXXXXXXXLLLDRCAGHTEFVAGVAFSLFEPRLMATCAWDRRLCFWRS 327
            Q  ++   H YAVR++ FSPH   +LA+ASYD +A +WD      +   V                L D   GHTEFV G+ +SLF+  L+A+ AWD  +  WR+
Sbjct:  274 QVTAICTGHEYAVRKVAFSPHSPSLLASASYDMTARVWDVDHPSASLASVASRLGQAGGGPGAMRSLHD---GHTEFVVGLGWSLFQEGLVASTAWDMSVHLWRA 375
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BLAST of mRNA_E-fasciculatus_F_contig10779.618.1 vs. uniprot
Match: A0A409VIA6_9AGAR (Peroxin-7 n=1 Tax=Gymnopilus dilepis TaxID=231916 RepID=A0A409VIA6_9AGAR)

HSP 1 Score: 72.4 bits (176), Expect = 1.220e-12
Identity = 41/101 (40.59%), Postives = 55/101 (54.46%), Query Frame = 1 
Query:   22 SVMLEHRYAVRRLRFSPHRTGVLATASYDTSAILWDTKRRPPAGTGVXXXXXXXXXXXXXXXLLLDRCAGHTEFVAGVAFSLFEPRLMATCAWDRRLCFWR 324
            S +L H YAVR++++SPHR  VLATASYD +  +W T   P                      LL     HTEFV GVA+SL++  ++A+C WD RL  +R
Sbjct:  286 SQLLGHEYAVRKVQWSPHRADVLATASYDMTCRVWTTTPAP------------------GRPQLLHIHDPHTEFVVGVAWSLYDEGVLASCGWDGRLHVFR 368
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10779.618.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KU09_9PHAE3.480e-4571.93Peroxin-7 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxI... [more]
D7FIF0_ECTSI4.090e-1997.50Peroxin-7 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A177VY82_9BASI1.920e-1541.35Peroxin-7 n=2 Tax=Tilletia TaxID=13289 RepID=A0A17... [more]
A0A177TCZ7_9BASI2.600e-1541.35Peroxin-7 n=2 Tax=Tilletia TaxID=13289 RepID=A0A17... [more]
A0A4Y7QFZ4_9AGAM8.180e-1539.42Peroxin-7 n=1 Tax=Rickenella mellea TaxID=50990 Re... [more]
A0A316YY66_9BASI5.700e-1439.22Peroxin-7 n=1 Tax=Acaromyces ingoldii TaxID=215250... [more]
A0A0K3CGN7_RHOTO1.860e-1338.24Peroxin-7 n=4 Tax=Rhodosporidium toruloides TaxID=... [more]
A0A317XJ83_9BASI8.550e-1339.05Peroxin-7 n=1 Tax=Testicularia cyperi TaxID=188248... [more]
A0A316UUF6_9BASI9.100e-1337.14Peroxin-7 n=1 Tax=Jaminaea rosea TaxID=1569628 Rep... [more]
A0A409VIA6_9AGAR1.220e-1240.59Peroxin-7 n=1 Tax=Gymnopilus dilepis TaxID=231916 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10779contigE-fasciculatus_F_contig10779:4338..4670 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score90.1
Seed ortholog evalue6.4e-16
Seed eggNOG ortholog2880.D7FIF0
Preferred namePEX7
KEGG koko:K13341
KEGG TC3.A.20.1
KEGG Pathwayko04146,map04146
GOsGO:0000151,GO:0000268,GO:0001501,GO:0001503,GO:0001764,GO:0001958,GO:0003674,GO:0005048,GO:0005053,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0005778,GO:0005782,GO:0005829,GO:0006082,GO:0006605,GO:0006625,GO:0006629,GO:0006631,GO:0006635,GO:0006662,GO:0006810,GO:0006886,GO:0006928,GO:0006996,GO:0007031,GO:0007275,GO:0007399,GO:0008104,GO:0008150,GO:0008152,GO:0008610,GO:0008611,GO:0009056,GO:0009058,GO:0009062,GO:0009653,GO:0009887,GO:0009987,GO:0015031,GO:0015833,GO:0015919,GO:0016020,GO:0016042,GO:0016043,GO:0016054,GO:0016477,GO:0016558,GO:0016560,GO:0017038,GO:0018904,GO:0019395,GO:0019752,GO:0019899,GO:0022008,GO:0030154,GO:0030258,GO:0031090,GO:0031461,GO:0031903,GO:0031907,GO:0031974,GO:0032501,GO:0032502,GO:0032787,GO:0032991,GO:0033036,GO:0033218,GO:0033365,GO:0034440,GO:0034613,GO:0036075,GO:0040011,GO:0042277,GO:0042579,GO:0042802,GO:0042803,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043574,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044249,GO:0044255,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044464,GO:0044743,GO:0045184,GO:0046395,GO:0046485,GO:0046504,GO:0046907,GO:0046983,GO:0048513,GO:0048699,GO:0048705,GO:0048731,GO:0048856,GO:0048869,GO:0048870,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051674,GO:0055085,GO:0055114,GO:0060348,GO:0060349,GO:0060350,GO:0065002,GO:0070013,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071806,GO:0071840,GO:0072329,GO:0072594,GO:0072662,GO:0072663,GO:0080008,GO:0097384,GO:0098588,GO:0098805,GO:1901503,GO:1901575,GO:1901576,GO:1902494,GO:1990234
EggNOG free text desc.peroxisome matrix targeting signal-2 binding
EggNOG OGsKOG0277@1,KOG0277@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Hectar predicted targeting categorymitochondrion
Exons1
Model size333
Cds size306
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927576.6398118-CDS-E-fasciculatus_F_contig10779:4337..46431622927576.6398118-CDS-E-fasciculatus_F_contig10779:4337..4643Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10779 4338..4643 -
1695995604.163672-CDS-E-fasciculatus_F_contig10779:4337..46431695995604.163672-CDS-E-fasciculatus_F_contig10779:4337..4643Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10779 4338..4643 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927576.6516957-UTR-E-fasciculatus_F_contig10779:4643..46701622927576.6516957-UTR-E-fasciculatus_F_contig10779:4643..4670Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10779 4644..4670 -
1695995604.173336-UTR-E-fasciculatus_F_contig10779:4643..46701695995604.173336-UTR-E-fasciculatus_F_contig10779:4643..4670Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10779 4644..4670 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10779.618.1prot_E-fasciculatus_F_contig10779.618.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig10779 4338..4643 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig10779.618.1

>prot_E-fasciculatus_F_contig10779.618.1 ID=prot_E-fasciculatus_F_contig10779.618.1|Name=mRNA_E-fasciculatus_F_contig10779.618.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=102bp
MLEHRYAVRRLRFSPHRTGVLATASYDTSAILWDTKRRPPAGTGVVPPPP
PAGAGGGGGGLLLDRCAGHTEFVAGVAFSLFEPRLMATCAWDRRLCFWRS
L*
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mRNA from alignment at E-fasciculatus_F_contig10779:4338..4670-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig10779.618.1 ID=mRNA_E-fasciculatus_F_contig10779.618.1|Name=mRNA_E-fasciculatus_F_contig10779.618.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=333bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10779:4338..4670- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGAAAGAACAGGCAGCCGTTGTCTGTCATGCTGGAGCACCGGTACGCCGT
GAGAAGGCTCCGATTTTCGCCGCACCGAACCGGCGTCCTCGCCACAGCCT
CGTACGACACGTCCGCGATCTTGTGGGACACGAAGAGAAGGCCTCCCGCG
GGGACCGGGGTCGTTCCGCCGCCGCCGCCGGCGGGGGCGGGAGGGGGGGG
AGGGGGGCTGCTGCTCGACCGATGTGCGGGCCACACGGAGTTTGTCGCGG
GGGTGGCGTTTTCGCTGTTCGAGCCGCGTTTGATGGCCACGTGCGCGTGG
GATCGGCGGCTTTGCTTTTGGCGGTCGTTGTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10779:4338..4670-

>mRNA_E-fasciculatus_F_contig10779.618.1 ID=mRNA_E-fasciculatus_F_contig10779.618.1|Name=mRNA_E-fasciculatus_F_contig10779.618.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=612bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10779:4338..4670- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCTGGAGCACCGGTACGCCGTGAGAAGGCTCCGATTTTCGCCGCACCG
AACCGGCGTCCTCGCCACAGCCTCGTACGACACGTCCGCGATCTTGTGGG
ACACGAAGAGAAGGCCTCCCGCGGGGACCGGGGTCGTTCCGCCGCCGCCG
CCGGCGGGGGCGGGAGGGGGGGGAGGGGGGCTGCTGCTCGACCGATGTGC
GGGCCACACGGAGTTTGTCGCGGGGGTGGCGTTTTCGCTGTTCGAGCCGC
GTTTGATGGCCACGTGCGCGTGGGATCGGCGGCTTTGCTTTTGGCGGTCG
TTGTGAATGCTGGAGCACCGGTACGCCGTGAGAAGGCTCCGATTTTCGCC
GCACCGAACCGGCGTCCTCGCCACAGCCTCGTACGACACGTCCGCGATCT
TGTGGGACACGAAGAGAAGGCCTCCCGCGGGGACCGGGGTCGTTCCGCCG
CCGCCGCCGGCGGGGGCGGGAGGGGGGGGAGGGGGGCTGCTGCTCGACCG
ATGTGCGGGCCACACGGAGTTTGTCGCGGGGGTGGCGTTTTCGCTGTTCG
AGCCGCGTTTGATGGCCACGTGCGCGTGGGATCGGCGGCTTTGCTTTTGG
CGGTCGTTGTGA
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