mRNA_E-fasciculatus_F_contig10766.610.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig10766.610.1
Unique NamemRNA_E-fasciculatus_F_contig10766.610.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig10766.610.1 vs. uniprot
Match: D8LH20_ECTSI (Fe2OG dioxygenase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LH20_ECTSI)

HSP 1 Score: 169 bits (429), Expect = 1.550e-49
Identity = 86/116 (74.14%), Postives = 88/116 (75.86%), Query Frame = 1 
Query:    1 VMDMRHPDGVRVKNLYLPRGSLLVMEGPARYEWSHGIASRKTDMVSPPPPKVPQMYAIMGCEVGSFSAVSFLRKRSTRISFTFRRVRDPTVACGCDFAKSCDRETPVATATFLKKG 348
            VMDMRHPDGVRVKNLYLPRGSLLVMEGPARYEWSHGIASRKTDMV                          L +R+TRISFTFRRVRDP VACGCDFAKSCDRETPVATATFLKKG
Sbjct:  258 VMDMRHPDGVRVKNLYLPRGSLLVMEGPARYEWSHGIASRKTDMVD-----------------------GVLTRRATRISFTFRRVRDPAVACGCDFAKSCDRETPVATATFLKKG 350
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BLAST of mRNA_E-fasciculatus_F_contig10766.610.1 vs. uniprot
Match: A0A3Q3G1T8_9LABR (Alkylated DNA repair protein alkB homolog 8 n=2 Tax=Labrus bergylta TaxID=56723 RepID=A0A3Q3G1T8_9LABR)

HSP 1 Score: 85.5 bits (210), Expect = 4.980e-17
Identity = 52/104 (50.00%), Postives = 65/104 (62.50%), Query Frame = 1 
Query:    1 VMDMRHPDGVRVKNLYLPRGSLLVMEGPARYEWSHGIASRKTDMVSPPPPKVPQMYAIMGCEVGSFSAVSFLRKRSTRISFTFRRVRDPTVACGCDFAKSCDRE 312
            VM+ RHPDG  V  + LP  SLLVM+G +RY W+HGI  RK DMV   P   PQ  A+   EVG+ S ++ LRKR TR SFTFR++R     C C F  +CD +
Sbjct:  261 VMEFRHPDGHLVP-VVLPPRSLLVMKGESRYLWTHGITPRKYDMV---PACDPQSPALKTAEVGTPSNLT-LRKRGTRTSFTFRKIRHKP--CDCAFPSACDSQ 357
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BLAST of mRNA_E-fasciculatus_F_contig10766.610.1 vs. uniprot
Match: A0A6P7PBA5_BETSP (Alkylated DNA repair protein alkB homolog 8 n=1 Tax=Betta splendens TaxID=158456 RepID=A0A6P7PBA5_BETSP)

HSP 1 Score: 84.3 bits (207), Expect = 1.270e-16
Identity = 49/104 (47.12%), Postives = 64/104 (61.54%), Query Frame = 1 
Query:    1 VMDMRHPDGVRVKNLYLPRGSLLVMEGPARYEWSHGIASRKTDMVSPPPPKVPQMYAIMGCEVGSFSAVSFLRKRSTRISFTFRRVRDPTVACGCDFAKSCDRE 312
            VM+ RHP G R+  + LP  SLLVM+G +RY W+HGI  RK DMV   P   PQ  A     +G+  +++ LRKR TR SFTFR++R     CGC F  +CD +
Sbjct:  261 VMEFRHPGG-RLVPVLLPERSLLVMKGESRYLWTHGITPRKFDMV---PASAPQSCAHKSPGLGTNGSLT-LRKRGTRTSFTFRKIRHEP--CGCAFPSACDSQ 357
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BLAST of mRNA_E-fasciculatus_F_contig10766.610.1 vs. uniprot
Match: UPI00188F6B39 (alkylated DNA repair protein alkB homolog 8 isoform X2 n=1 Tax=Talpa occidentalis TaxID=50954 RepID=UPI00188F6B39)

HSP 1 Score: 78.2 bits (191), Expect = 1.780e-14
Identity = 48/112 (42.86%), Postives = 59/112 (52.68%), Query Frame = 1 
Query:    1 VMDMRHPDGVRVKNLYLPRGSLLVMEGPARYEWSHGIASRKTDMVSPPPPKVPQMYAIMGCEVGSFSAVSFLRKRSTRISFTFRRVRDPTVACGCDFAKSCDRETPVATATF 336
            VMD +HPDGV V  + LPR SLLVM G ARY W+HGI  RK D V            I+  +VG  +    L KR  R S+TFR+VR     C C +   CD +  V   +F
Sbjct:  259 VMDFKHPDGVTVP-VMLPRRSLLVMTGEARYLWTHGITPRKFDTVQA---SKGHKSGIITSDVGDLT----LSKRGIRTSYTFRKVRQ--TPCNCSYHLVCDSQMKVTAPSF 360
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BLAST of mRNA_E-fasciculatus_F_contig10766.610.1 vs. uniprot
Match: UPI00189030B2 (alkylated DNA repair protein alkB homolog 8 isoform X1 n=3 Tax=Talpidae TaxID=9373 RepID=UPI00189030B2)

HSP 1 Score: 78.2 bits (191), Expect = 1.810e-14
Identity = 48/112 (42.86%), Postives = 59/112 (52.68%), Query Frame = 1 
Query:    1 VMDMRHPDGVRVKNLYLPRGSLLVMEGPARYEWSHGIASRKTDMVSPPPPKVPQMYAIMGCEVGSFSAVSFLRKRSTRISFTFRRVRDPTVACGCDFAKSCDRETPVATATF 336
            VMD +HPDGV V  + LPR SLLVM G ARY W+HGI  RK D V            I+  +VG  +    L KR  R S+TFR+VR     C C +   CD +  V   +F
Sbjct:  259 VMDFKHPDGVTVP-VMLPRRSLLVMTGEARYLWTHGITPRKFDTVQA---SKGHKSGIITSDVGDLT----LSKRGIRTSYTFRKVRQ--TPCNCSYHLVCDSQMKVTAPSF 360
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BLAST of mRNA_E-fasciculatus_F_contig10766.610.1 vs. uniprot
Match: UPI001FAE1D47 (alkylated DNA repair protein alkB homolog 8 n=1 Tax=Girardinichthys multiradiatus TaxID=208333 RepID=UPI001FAE1D47)

HSP 1 Score: 77.8 bits (190), Expect = 2.480e-14
Identity = 48/105 (45.71%), Postives = 63/105 (60.00%), Query Frame = 1 
Query:    1 VMDMRHPDGVRVKNLYLPRGSLLVMEGPARYEWSHGIASRKTDMVSPPPPKVPQMYAIMGCEVGSFSAVSFLRKRSTRISFTFRRVR-DPTVACGCDFAKSCDRE 312
            VM+ RHPDG R   + LP  SL+VM+G +RY W+HGI  RK D+V    P           +VGS S ++ LRKR TR SFTFR++R +P   C C F  +CD +
Sbjct:  259 VMEFRHPDG-RAVPVVLPERSLMVMKGESRYLWTHGITPRKFDLVPACEP-----------DVGSNSGLT-LRKRGTRTSFTFRKIRYEP---CCCAFPSACDSQ 347
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BLAST of mRNA_E-fasciculatus_F_contig10766.610.1 vs. uniprot
Match: A0A8J6DWI8_GALPY (Alkylated DNA repair protein alkB homolog 8 n=1 Tax=Galemys pyrenaicus TaxID=202257 RepID=A0A8J6DWI8_GALPY)

HSP 1 Score: 77.0 bits (188), Expect = 4.620e-14
Identity = 48/107 (44.86%), Postives = 58/107 (54.21%), Query Frame = 1 
Query:    1 VMDMRHPDGVRVKNLYLPRGSLLVMEGPARYEWSHGIASRKTDMVSPPPPKVPQMYAIMGCEVGSFSAVSFLRKRSTRISFTFRRVRDPTVACGCDFAKSCDRETPV 321
            VMD +HPDGV V+ + LPR SLLVM G ARY W+HGI  RK D V            I+  +VG  +    L KR  R SFTFR+VR     C C +   CD +  V
Sbjct:  265 VMDFKHPDGVTVQ-VMLPRRSLLVMTGEARYLWTHGITPRKFDTVQA---SKGHKSGIITNDVGDLT----LSKRGIRTSFTFRKVRQ--TPCNCSYRLVCDSQMKV 361
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BLAST of mRNA_E-fasciculatus_F_contig10766.610.1 vs. uniprot
Match: UPI000331518D (alkylated DNA repair protein alkB homolog 8 n=1 Tax=Sorex araneus TaxID=42254 RepID=UPI000331518D)

HSP 1 Score: 76.6 bits (187), Expect = 6.270e-14
Identity = 46/112 (41.07%), Postives = 59/112 (52.68%), Query Frame = 1 
Query:    1 VMDMRHPDGVRVKNLYLPRGSLLVMEGPARYEWSHGIASRKTDMVSPPPPKVPQMYAIMGCEVGSFSAVSFLRKRSTRISFTFRRVRDPTVACGCDFAKSCDRETPVATATF 336
            VMD +HPDG     + LPR SLLVM G ARY W+HGI  RK D V      + +   I+  + G  +    LRKR  R SFTFR+VR     C C + + CD +      +F
Sbjct:  259 VMDFKHPDGATAP-VMLPRRSLLVMRGEARYLWAHGITPRKFDTVQA---SLGRTGGIIQSDAGDLT----LRKRGVRTSFTFRKVR--RTPCDCKYPQVCDSQMADTAPSF 360
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BLAST of mRNA_E-fasciculatus_F_contig10766.610.1 vs. uniprot
Match: A0A7K9YT32_9GALL (Alkylated DNA repair protein alkB homolog 8 (Fragment) n=3 Tax=Odontophoridae TaxID=224313 RepID=A0A7K9YT32_9GALL)

HSP 1 Score: 75.5 bits (184), Expect = 1.600e-13
Identity = 46/107 (42.99%), Postives = 62/107 (57.94%), Query Frame = 1 
Query:    1 VMDMRHPDGVRVKNLYLPRGSLLVMEGPARYEWSHGIASRKTDMVSPPPPKVPQMYAIMGCEVGSFSAVS---FLRKRSTRISFTFRRVRDPTVACGCDFAKSCDRE 312
            VMD +HPDG  V  + LPR SLLVM G +RY WSHGI  RK D++           + +G +VG+ +A      L++R TR SFTFR+VR  +  C C +   CD +
Sbjct:  269 VMDFKHPDGHTVA-VMLPRRSLLVMTGESRYLWSHGITPRKYDVIQ---------ASELGQKVGTITADVRDLTLKRRETRTSFTFRKVRRSS--CNCIYPSVCDSQ 363
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BLAST of mRNA_E-fasciculatus_F_contig10766.610.1 vs. uniprot
Match: A0A6P7VKD2_IXOSC (alkylated DNA repair protein alkB homolog 8 isoform X2 n=1 Tax=Ixodes scapularis TaxID=6945 RepID=A0A6P7VKD2_IXOSC)

HSP 1 Score: 75.1 bits (183), Expect = 2.040e-13
Identity = 47/105 (44.76%), Postives = 57/105 (54.29%), Query Frame = 1 
Query:    1 VMDMRHPDGVRVKNLYLPRGSLLVMEGPARYEWSHGIASRKTDMVSPPPPKVPQMYAIMGCEVGSFSAVSFLRKRSTRISFTFRRVRDPTVACGCDFAKSCDRET 315
            VMD RHPDG R   L  PR +LL + GP+RY W+HGIASRK+D+V  P  +VP                  L +R  RISFTFRR+R    +CG D      R T
Sbjct:  261 VMDFRHPDGDRAAVLLPPRSALL-LHGPSRYIWTHGIASRKSDVV--PRTEVPGQGLT-------------LSRRGVRISFTFRRIRHGDCSCGHDLLCDSSRLT 349
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10766.610.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LH20_ECTSI1.550e-4974.14Fe2OG dioxygenase domain-containing protein n=2 Ta... [more]
A0A3Q3G1T8_9LABR4.980e-1750.00Alkylated DNA repair protein alkB homolog 8 n=2 Ta... [more]
A0A6P7PBA5_BETSP1.270e-1647.12Alkylated DNA repair protein alkB homolog 8 n=1 Ta... [more]
UPI00188F6B391.780e-1442.86alkylated DNA repair protein alkB homolog 8 isofor... [more]
UPI00189030B21.810e-1442.86alkylated DNA repair protein alkB homolog 8 isofor... [more]
UPI001FAE1D472.480e-1445.71alkylated DNA repair protein alkB homolog 8 n=1 Ta... [more]
A0A8J6DWI8_GALPY4.620e-1444.86Alkylated DNA repair protein alkB homolog 8 n=1 Ta... [more]
UPI000331518D6.270e-1441.07alkylated DNA repair protein alkB homolog 8 n=1 Ta... [more]
A0A7K9YT32_9GALL1.600e-1342.99Alkylated DNA repair protein alkB homolog 8 (Fragm... [more]
A0A6P7VKD2_IXOSC2.040e-1344.76alkylated DNA repair protein alkB homolog 8 isofor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10766contigE-fasciculatus_F_contig10766:3948..4571 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score167.9
Seed ortholog evalue2.7e-39
Seed eggNOG ortholog2880.D8LH20
Preferred nameALKBH8
KEGG koko:K10770,ko:K14685,ko:K17867,ko:K18670
KEGG TC2.A.100.1
KEGG Pathwayko04216,ko04978,map04216,map04978
GOsGO:0000049,GO:0001510,GO:0002097,GO:0002098,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0005488,GO:0005506,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008198,GO:0008270,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016300,GO:0016491,GO:0016604,GO:0016705,GO:0016706,GO:0016740,GO:0016741,GO:0030488,GO:0031974,GO:0031981,GO:0032259,GO:0033554,GO:0034470,GO:0034641,GO:0034660,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0046872,GO:0046914,GO:0050896,GO:0051213,GO:0051716,GO:0055114,GO:0070013,GO:0071704,GO:0090304,GO:0097159,GO:0140098,GO:0140101,GO:1901360,GO:1901363
EggNOG free text desc.dioxygenase activity
EggNOG OGsCOG3145@1,KOG4176@2759
EC2.1.1.229,2.7.12.1
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko02000,ko03012,ko03016
Hectar predicted targeting categoryother localisation
Exons3
Model size351
Cds size348
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10766.610.1prot_E-fasciculatus_F_contig10766.610.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig10766 3948..4568 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927575.473475-CDS-E-fasciculatus_F_contig10766:3947..40871622927575.473475-CDS-E-fasciculatus_F_contig10766:3947..4087Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10766 3948..4087 -
1695995603.674207-CDS-E-fasciculatus_F_contig10766:3947..40871695995603.674207-CDS-E-fasciculatus_F_contig10766:3947..4087Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10766 3948..4087 -
1622927575.487637-CDS-E-fasciculatus_F_contig10766:4344..44191622927575.487637-CDS-E-fasciculatus_F_contig10766:4344..4419Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10766 4345..4419 -
1695995603.6884944-CDS-E-fasciculatus_F_contig10766:4344..44191695995603.6884944-CDS-E-fasciculatus_F_contig10766:4344..4419Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10766 4345..4419 -
1622927575.5002027-CDS-E-fasciculatus_F_contig10766:4435..45681622927575.5002027-CDS-E-fasciculatus_F_contig10766:4435..4568Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10766 4436..4568 -
1695995603.6959474-CDS-E-fasciculatus_F_contig10766:4435..45681695995603.6959474-CDS-E-fasciculatus_F_contig10766:4435..4568Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10766 4436..4568 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927575.512688-UTR-E-fasciculatus_F_contig10766:4568..45711622927575.512688-UTR-E-fasciculatus_F_contig10766:4568..4571Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10766 4569..4571 -
1695995603.703368-UTR-E-fasciculatus_F_contig10766:4568..45711695995603.703368-UTR-E-fasciculatus_F_contig10766:4568..4571Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10766 4569..4571 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig10766.610.1

>prot_E-fasciculatus_F_contig10766.610.1 ID=prot_E-fasciculatus_F_contig10766.610.1|Name=mRNA_E-fasciculatus_F_contig10766.610.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=116bp
MDMRHPDGVRVKNLYLPRGSLLVMEGPARYEWSHGIASRKTDMVSPPPPK
VPQMYAIMGCEVGSFSAVSFLRKRSTRISFTFRRVRDPTVACGCDFAKSC
DRETPVATATFLKKG*
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mRNA from alignment at E-fasciculatus_F_contig10766:3948..4571-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig10766.610.1 ID=mRNA_E-fasciculatus_F_contig10766.610.1|Name=mRNA_E-fasciculatus_F_contig10766.610.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=624bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10766:3948..4571- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTGATGGACATGCGACATCCGGACGGCGTGCGCGTAAAGAACTTGTACCT
CCCGCGAGGCTCGTTGCTTGTTATGGAGGGTCCCGCACGATACGAGTGGT
CCCACGGGATCGCCAGCCGCAAAACTGACATGGTATGTGCGCCCGAATGC
AGCCCCGCCCCCGCCTAAAGTCCCTCAGATGTATGCCATCATGGGTTGTG
AAGTTGGGTCGTTTAGCGCGGTGAGCTGTTGAGGAAGCCGGCGATAGAAC
ACGCGTGGTTCGCTTGTTTGCCTTTGTATCTATTTTGTGTATAAAGTCAA
AGTTTGAGCAATGGGTGAGTTGTCCTGGCTGAATACTGGATGGCCCGCAA
GGCGTTCTTCCTCGATTGCGCGCTGTTGAGGGTAGTGCCCAATTTCCGAG
CCTGACACCTCCACCCACCCTCCTCCATGTTCTTTCTCTTGGCACCGTTT
ATTGCCACACATGACATCTCTCAGGTTGACGGAGTTTTGAGGAAGCGATC
GACACGTATTTCGTTCACGTTCAGGCGCGTGCGAGACCCGACGGTGGCGT
GCGGGTGCGACTTCGCGAAGAGTTGCGATCGAGAGACGCCTGTGGCCACC
GCCACCTTTCTCAAGAAGGGGTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10766:3948..4571-

>mRNA_E-fasciculatus_F_contig10766.610.1 ID=mRNA_E-fasciculatus_F_contig10766.610.1|Name=mRNA_E-fasciculatus_F_contig10766.610.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=696bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10766:3948..4571- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGACATGCGACATCCGGACGGCGTGCGCGTAAAGAACTTGTACCTCCC
GCGAGGCTCGTTGCTTGTTATGGAGGGTCCCGCACGATACGAGTGGTCCC
ACGGGATCGCCAGCCGCAAAACTGACATGGTATATGGACATGCGACATCC
GGACGGCGTGCGCGTAAAGAACTTGTACCTCCCGCGAGGCTCGTTGCTTG
TTATGGAGGGTCCCGCACGATACGAGTGGTCCCACGGGATCGCCAGCCGC
AAAACTGACATGGTATCCCCGCCCCCGCCTAAAGTCCCTCAGATGTATGC
CATCATGGGTTGTGAAGTTGGGTCGTTTAGCGCGGTGAGCTCCCCGCCCC
CGCCTAAAGTCCCTCAGATGTATGCCATCATGGGTTGTGAAGTTGGGTCG
TTTAGCGCGGTGAGCTTTTTGAGGAAGCGATCGACACGTATTTCGTTCAC
GTTCAGGCGCGTGCGAGACCCGACGGTGGCGTGCGGGTGCGACTTCGCGA
AGAGTTGCGATCGAGAGACGCCTGTGGCCACCGCCACCTTTCTCAAGAAG
GGGTGATTTTGAGGAAGCGATCGACACGTATTTCGTTCACGTTCAGGCGC
GTGCGAGACCCGACGGTGGCGTGCGGGTGCGACTTCGCGAAGAGTTGCGA
TCGAGAGACGCCTGTGGCCACCGCCACCTTTCTCAAGAAGGGGTGA
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