mRNA_E-fasciculatus_F_contig107.555.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig107.555.1
Unique NamemRNA_E-fasciculatus_F_contig107.555.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig107.555.1 vs. uniprot
Match: D7FN17_ECTSI (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FN17_ECTSI)

HSP 1 Score: 423 bits (1088), Expect = 9.650e-146
Identity = 212/221 (95.93%), Postives = 216/221 (97.74%), Query Frame = 1 
Query:    1 MASPVKDVYLIAYNLACASGWGYVLFVCVSHILAGNEPQALYDEVEKVLQIVQTAALMEVLHAMLGVVRSPWVTTLMQVSSRIVLVWGFMWAVPSTQGQLGSMLCITSWACVEIPRYLFYTFGVLKSSPYPLFYLRYSLFAVLYPTGIAGEVMTMLAGLLDLKNAQDTLRLGVGPVSVSGYIVTLALLAVYVPGGPYMYMNMVGNRRSAFKKRNAAASKKA 663
            M SP+KDVYLIAYNLACASGW YVLF CVSHILAGNEPQALYDEVEKVLQIVQTAALMEVLHAMLGVVRSPWVTTLMQVSSRI+LVWGFMWAVPSTQGQLGSMLCITSWACVEIPRYLFYTFGVLKSSP+PLFYLRYSLFAVLYPTGIAGEVMTMLAGL DLKNAQDTLRLGVGP+SVSGYIVTLALLAVYVPGGPYMYMNMVGNRRSAFKKRNA ASKKA
Sbjct:    1 MGSPIKDVYLIAYNLACASGWSYVLFACVSHILAGNEPQALYDEVEKVLQIVQTAALMEVLHAMLGVVRSPWVTTLMQVSSRIILVWGFMWAVPSTQGQLGSMLCITSWACVEIPRYLFYTFGVLKSSPFPLFYLRYSLFAVLYPTGIAGEVMTMLAGLPDLKNAQDTLRLGVGPISVSGYIVTLALLAVYVPGGPYMYMNMVGNRRSAFKKRNAGASKKA 221
[Close]
BLAST of mRNA_E-fasciculatus_F_contig107.555.1 vs. uniprot
Match: A0A835ZGJ3_9STRA (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGJ3_9STRA)

HSP 1 Score: 201 bits (510), Expect = 1.300e-58
Identity = 102/213 (47.89%), Postives = 142/213 (66.67%), Query Frame = 1 
Query:   19 DVYLIAYNLACASGWGYVLFVCVSHILAGNEPQALYDEVEKVLQIVQTAALMEVLHAMLGVVRSPWVTTLMQVSSRIVLVWGFMWAVPSTQGQLGSMLCITSWACVEIPRYLFYTFGVLKSSPYPLFYLRYSLFAVLYPTGIAGEVMTMLAGLLDLKNAQDTLRLGVGPVSVSGYIVTLALLAVYVPGGPYMYMNMVGNRRSAFKKRNAAASK 657
              YL AYNLACA GW + L +       G   +  ++ +   +  VQT A+ME+LH+++G+V SPW+TTL+QVSSR+V+ WGF+++  ++Q      L   SWA VE+PRYLFY F ++ + PYPLF+LRYSLFAVLYP+GI GE+MT++ G  D   A   + L  G +S+S Y + L +LA YVPG P+MY +MV  RR  FK+R AA+ K
Sbjct:    5 SAYLGAYNLACAGGWAFALVLFAKAQYEGASWRETWNSMSTTVMAVQTVAVMEILHSLVGLVPSPWMTTLLQVSSRLVVAWGFLYSCEASQDHYAMALTTVSWALVEVPRYLFYVFNIMGNVPYPLFWLRYSLFAVLYPSGITGEIMTIVNGF-DCLKALKPVPLA-GGISISMYHMALLVLATYVPGAPFMYSHMVTTRRKQFKRRKAASKK 215
[Close]
BLAST of mRNA_E-fasciculatus_F_contig107.555.1 vs. uniprot
Match: A0A7S3HHK7_9STRA (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HHK7_9STRA)

HSP 1 Score: 182 bits (462), Expect = 2.240e-51
Identity = 102/215 (47.44%), Postives = 136/215 (63.26%), Query Frame = 1 
Query:    1 MASPVKDVYLIAYNLACASGWGYVLFVCVSHILAGNEPQALYDEVEKVLQIVQTAALMEVLHAMLGVVRSPWVTTLMQVSSRIVLVWGFMWAVPSTQGQLGSMLCITSWACVEIPRYLFYTFGVLKSSPYPLFYLRYSLFAVLYPTGIAGEVMTMLAGL---LDLKNAQDTLRLGVGPVSVSGYIVTLALLAV-YVPGGPYMYMNMVGNRRSAFK 633
            MA  +  VYL+AYNLAC +GW YVLF+CV HI A       + EVE  L+IVQTAA++EVLH+M+G+V+SPW T  MQV SR+  +W  M    + Q  +  +L  TSW  VE+PRYLFY   +L + PYPLF+LRYSLFAVLYPTGI GE+ TM       +     QD       P+    ++V++ L+A+ Y+PG P M+ +MV  R   F+
Sbjct:    1 MAKGLALVYLLAYNLACCAGWAYVLFICVKHIRAETIADT-WSEVELPLKIVQTAAVLEVLHSMVGLVKSPWATAFMQVFSRVWTLWAIMDTTDAAQTTVFFVLACTSWGLVEVPRYLFYALNLLNAVPYPLFWLRYSLFAVLYPTGITGELGTMYHAFNFFITQAPIQDQ------PLFRQIHLVSIVLVAITYIPGSPKMFGHMVKTRSKQFE 208
[Close]
BLAST of mRNA_E-fasciculatus_F_contig107.555.1 vs. uniprot
Match: A0A7S2U8Y3_9STRA (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U8Y3_9STRA)

HSP 1 Score: 182 bits (461), Expect = 9.310e-50
Identity = 109/223 (48.88%), Postives = 139/223 (62.33%), Query Frame = 1 
Query:   13 VKDVYLIAYNLACASGWGYVLFVCVSHIL-AGNEPQALYDEVEKV------LQIVQTAALMEVLHAMLGVVRSPWVTTLMQVSSRIVLVWGFMWAVPSTQGQLGSMLCITSWACVEIPRYLFYTFGVL-----KSSPYPLFYLRYSLFAVLYPTGIAGEVMTMLAGLLDLKNAQDTLRLGVGPVSVSGYIVTLALLAVYVPGGPYMYMNMVGNRRSAFKKRNA 645
            +KD YLIAYN AC  GW YVL + +  ++ + + P     +V  V      L IVQ+AALME++HA +G+VRSP V T MQV+SRI  ++    + P  Q Q G+ L + SWA VE+PRY FY   +L     K +PYPLF+LRYSLFA+LYPTGI GEV   LA   D       L L    +S+  Y + L+L  +YVPG P M MNMVGNR+SAFKKR A
Sbjct:    3 LKDAYLIAYNAACCGGWAYVLSLALPSVIGSASSPLEALSQVYAVPNLALVLNIVQSAALMEIVHAAVGLVRSPLVVTAMQVASRIAAIFAISNS-PQAQVQFGAGLMVISWALVEVPRYAFYMAALLTGDATKKTPYPLFWLRYSLFAILYPTGITGEVTVFLAAAKD----DAFLNLYGESLSIIMYYLVLSLPIIYVPGSPVMIMNMVGNRKSAFKKRFA 220
[Close]
BLAST of mRNA_E-fasciculatus_F_contig107.555.1 vs. uniprot
Match: A0A6G0XHX3_9STRA (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XHX3_9STRA)

HSP 1 Score: 173 bits (438), Expect = 7.320e-48
Identity = 97/221 (43.89%), Postives = 137/221 (61.99%), Query Frame = 1 
Query:   13 VKDVYLIAYNLACASGWGYVLFVCVSHILAGNEPQA----LYDEVEKVLQIVQTAALMEVLHAMLGVVRSPWVTTLMQVSSRIVLVWGFMWAVPSTQGQLGSMLCITSWACVEIPRYLFYTFGVLKSSPYPLFYLRYSLFAVLYPTGIAGEVMTMLAGLLDLKNAQDTLRL-GVGPVSVSGYIVTLALLAVYVPGGPYMYMNMVGNRRSAFKKRNAAASKK 660
            +K++YL  YNLAC +GW YVL +    +            L+  VE  L+IVQTAA+ME+LHAM+G+VRSP  +T++QVSSR+ L+W     VP T+   G ++ +TSW+ VE+PRY FY   +  + P  LF+LRY LF VLYPTGI+GEV  ML+ L  + N    +++     V++S   +    L VYVPG P+MY NM   R+ A+ K+N A + K
Sbjct:    2 IKNLYLTLYNLACCAGWAYVLGLTFQTVNQDRNIDVSAAKLWAIVEIPLKIVQTAAIMEILHAMVGIVRSPVFSTVLQVSSRLALLWMINDLVPETRAHWGFVMMVTSWSLVEVPRYAFYALNLWNAVPDWLFFLRYHLFMVLYPTGISGEVSCMLSALPYVTNGAYAIQMPNDHNVAISLQFMIYLTLVVYVPGSPFMYQNMNNMRKKAYAKKNEAKTLK 222
[Close]
BLAST of mRNA_E-fasciculatus_F_contig107.555.1 vs. uniprot
Match: A0A2D4CGE6_PYTIN (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CGE6_PYTIN)

HSP 1 Score: 172 bits (435), Expect = 2.350e-47
Identity = 98/223 (43.95%), Postives = 139/223 (62.33%), Query Frame = 1 
Query:    1 MASP--VKDVYLIAYNLACASGWGYVLFVCVSHILAGNEP--------QALYDEVEKVLQIVQTAALMEVLHAMLGVVRSPWVTTLMQVSSRIVLVWGFMWAVPSTQGQLGSMLCITSWACVEIPRYLFYTFGVLKSSPYPLFYLRYSLFAVLYPTGIAGEVMTMLAGLLDLKNAQDTLRLGVG-PVSVSGYIVTLALLAVYVPGGPYMYMNMVGNRRSAFKK 636
            MA P  + ++YL+AYN A A+GW YVLF+ V+ +LAG E         ++ +D VE  L++VQ+AA ME+LHA LG+VRSP  +T MQV SR+ LVWG     P ++ Q G  L + SW  VE+PRY FY   +    P  +F+LR  LF VLYP+G+ GEV+ M++ L  LK+    ++L     V+VS Y V + +L +Y+PG P MY +M+  R  A+ K
Sbjct:    1 MAKPNALLNLYLLAYNAASAAGWAYVLFLTVTTVLAGREQGKDWSAISRSTWDTVELPLKVVQSAAFMEILHAALGLVRSPLGSTFMQVGSRLWLVWGINVLCPDSRYQFGFPLMVASWGLVEVPRYTFYALNLFNIVPSFVFFLRXHLFMVLYPSGVGGEVLCMISALPYLKSGAYAVQLPNSLNVAVSLYTVVIMMLIIYIPGLPVMYSHMLTQRNRAYSK 223
[Close]
BLAST of mRNA_E-fasciculatus_F_contig107.555.1 vs. uniprot
Match: A0A485KQR1_9STRA (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KQR1_9STRA)

HSP 1 Score: 165 bits (417), Expect = 8.930e-45
Identity = 96/221 (43.44%), Postives = 133/221 (60.18%), Query Frame = 1 
Query:   13 VKDVYLIAYNLACASGWGYVLFVCVSHILAGNE----PQALYDEVEKVLQIVQTAALMEVLHAMLGVVRSPWVTTLMQVSSRIVLVWGFMWAVPSTQGQLGSMLCITSWACVEIPRYLFYTFGVLKSSPYPLFYLRYSLFAVLYPTGIAGEVMTMLAGLLDLKNAQDTLRL-GVGPVSVSGYIVTLALLAVYVPGGPYMYMNMVGNRRSAFKKRNAAASKK 660
            +K  YL+ +NLA   GW YVL      + A  +     Q L+  VE  L+IVQT ALMEVLHAMLG+VRSP  +T MQVSSR+ L+W      P ++   G +L + SW+ VE+PRY FY   +L + P  LF+LRY LF VLYP+GI GEV  ML  L  L +   ++++     V++S YIV +  L  Y+PG P+M+ +M   R+ A+ K+N   + K
Sbjct:    2 IKTTYLVLFNLASCLGWAYVLGQTFQLVYADQDIEKSSQTLWGVVEGPLKIVQTMALMEVLHAMLGLVRSPVGSTFMQVSSRLFLLWAINVLCPDSRYHWGFILMVASWSLVEVPRYAFYALNLLDAVPDWLFFLRYHLFMVLYPSGITGEVTCMLKALPLLASGAYSVQMPNTHNVAISLYIVVVITLITYIPGSPFMFNHMNIQRKKAYAKKNEVKTLK 222
[Close]
BLAST of mRNA_E-fasciculatus_F_contig107.555.1 vs. uniprot
Match: A0A3R7HWY0_9STRA (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7HWY0_9STRA)

HSP 1 Score: 164 bits (415), Expect = 1.920e-44
Identity = 95/221 (42.99%), Postives = 136/221 (61.54%), Query Frame = 1 
Query:    1 MASPVKDVYLIAYNLACASGWGYVLFVCVSHIL----AG----NEPQALYDEVEKVLQIVQTAALMEVLHAMLGVVRSPWVTTLMQVSSRIVLVWGFMWAVPSTQGQLGSMLCITSWACVEIPRYLFYTFGVLKSSPYPLFYLRYSLFAVLYPTGIAGEVMTMLAGLLDLKNAQDTLRL-GVGPVSVSGYIVTLALLAVYVPGGPYMYMNMVGNRRSAFKK 636
            MA+ + ++YL+A+N A  +GW YVL++ VS +     AG    N  Q+ +D V   LQIVQT A+ME++HA +G VRSP  +TLMQVSSR+ LVWG     P ++ Q G  L + SW  VE+PRY FY   +    P  LF+LRY LF VLYP+G+ GE + M++ L  L      ++L     +++S Y+V + +L VY+PG P MY +M+  R  A+ K
Sbjct:    1 MANALLNLYLLAFNAASCAGWAYVLYLTVSTVHKSYEAGQDWENVAQSTWDVVALPLQIVQTMAVMEIVHAAVGFVRSPLGSTLMQVSSRLWLVWGINVLCPVSRYQFGFPLMVASWGLVEVPRYAFYALNLYNKVPSFLFFLRYHLFMVLYPSGVLGETLCMVSSLSFLSTGAYAIQLPNTHNIALSLYLVVILVLIVYIPGLPVMYGHMLTQRNRAYAK 221
[Close]
BLAST of mRNA_E-fasciculatus_F_contig107.555.1 vs. uniprot
Match: A0A024TZ79_9STRA (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=5 Tax=Aphanomyces TaxID=100860 RepID=A0A024TZ79_9STRA)

HSP 1 Score: 164 bits (414), Expect = 2.610e-44
Identity = 92/221 (41.63%), Postives = 133/221 (60.18%), Query Frame = 1 
Query:   13 VKDVYLIAYNLACASGWGYVLFVCVSHILAGNE----PQALYDEVEKVLQIVQTAALMEVLHAMLGVVRSPWVTTLMQVSSRIVLVWGFMWAVPSTQGQLGSMLCITSWACVEIPRYLFYTFGVLKSSPYPLFYLRYSLFAVLYPTGIAGEVMTMLAGLLDLKNAQDTLRL-GVGPVSVSGYIVTLALLAVYVPGGPYMYMNMVGNRRSAFKKRNAAASKK 660
            +K  YL+ +NLA + GW YVL      + A  +       L+  ++  L++VQT A+ EVLHAMLG+VRSP  +TLMQVSSR+ LVW      P ++   G +L + SW+ VE+PRY FY   +L++ P  LF+LRY LF VLYP+G+ GEV  M+  L  L     ++++     +SVS Y++ L  L VY PG P+MY +M   R+ A+ K+N   + K
Sbjct:    4 IKTAYLVLFNLASSLGWAYVLGQTFQLVYADQDIALSSAKLWGVIDTPLKVVQTMAVFEVLHAMLGLVRSPVGSTLMQVSSRLFLVWAINVLCPDSRYHWGFILMVASWSLVEVPRYAFYALNLLEAVPDWLFFLRYHLFMVLYPSGVTGEVTCMVKALPFLSTGAYSIQMPNTHNISVSLYVIVLLTLVVYAPGLPFMYTHMNVQRKKAYAKKNETKTLK 224
[Close]
BLAST of mRNA_E-fasciculatus_F_contig107.555.1 vs. uniprot
Match: K3XAL3_GLOUD (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3XAL3_GLOUD)

HSP 1 Score: 162 bits (410), Expect = 1.040e-43
Identity = 90/224 (40.18%), Postives = 135/224 (60.27%), Query Frame = 1 
Query:    4 ASPVKDVYLIAYNLACASGWGYVLFVCVSHILAGNEP--------QALYDEVEKVLQIVQTAALMEVLHAMLGVVRSPWVTTLMQVSSRIVLVWGFMWAVPSTQGQLGSMLCITSWACVEIPRYLFYTFGVLKSSPYPLFYLRYSLFAVLYPTGIAGEVMTMLAGLLDLKNAQDTLRL-GVGPVSVSGYIVTLALLAVYVPGGPYMYMNMVGNRRSAFKKRNAA 648
            +SP+ ++YL+A+N    +GW ++L+  V+ +LA  E         +A +D V   LQIVQT A ME++HA +G VRSP  +TLMQVSSR+ LVWG    +P ++ Q G  L + SW+ VE+PRY FY   +    P  L +LRY LF VLYP+G++GEV+ M++ L  L     +++      ++VS Y+V + +L  Y+PG P MY +M+  R   + K   A
Sbjct:    4 SSPLLNLYLLAFNALSGAGWAFILYTTVTTVLAAREQGKDWEHVSRATWDAVGFPLQIVQTMAAMEIVHAAIGFVRSPLGSTLMQVSSRLWLVWGINVLIPDSRYQFGFPLMVLSWSLVEVPRYSFYALNLYNKVPAFLTFLRYHLFMVLYPSGVSGEVLCMVSALPFLSTGAYSIQQPNTHNIAVSLYVVVILVLLTYIPGLPVMYGHMLTQRNRVYSKPKTA 227
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig107.555.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FN17_ECTSI9.650e-14695.93Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]
A0A835ZGJ3_9STRA1.300e-5847.89Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]
A0A7S3HHK7_9STRA2.240e-5147.44Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]
A0A7S2U8Y3_9STRA9.310e-5048.88Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]
A0A6G0XHX3_9STRA7.320e-4843.89Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]
A0A2D4CGE6_PYTIN2.350e-4743.95Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]
A0A485KQR1_9STRA8.930e-4543.44Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]
A0A3R7HWY0_9STRA1.920e-4442.99Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]
A0A024TZ79_9STRA2.610e-4441.63Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]
K3XAL3_GLOUD1.040e-4340.18Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig107contigE-fasciculatus_F_contig107:5070..9520 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score423.3
Seed ortholog evalue6.9e-116
Seed eggNOG ortholog2880.D7FN17
KEGG rclassRC00770,RC01095
KEGG koko:K10703
KEGG ReactionR07760,R10827
KEGG Pathwayko00062,ko01040,ko01110,ko01212,map00062,map01040,map01110,map01212
KEGG ModuleM00415
EggNOG free text desc.3-hydroxy-lignoceroyl-CoA dehydratase activity
EggNOG OGsCOG5198@1,KOG3187@2759
EC4.2.1.134
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01004
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPutative tyrosine phosphatase
Ec32 orthologEc-25_001190.1
Exons4
Model size1353
Cds size666
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig107.555.1prot_E-fasciculatus_F_contig107.555.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig107 5070..8833 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927568.8612385-CDS-E-fasciculatus_F_contig107:5069..52461622927568.8612385-CDS-E-fasciculatus_F_contig107:5069..5246Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig107 5070..5246 +
1695995599.9289253-CDS-E-fasciculatus_F_contig107:5069..52461695995599.9289253-CDS-E-fasciculatus_F_contig107:5069..5246Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig107 5070..5246 +
1622927568.8730927-CDS-E-fasciculatus_F_contig107:7257..74271622927568.8730927-CDS-E-fasciculatus_F_contig107:7257..7427Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig107 7258..7427 +
1695995599.9557197-CDS-E-fasciculatus_F_contig107:7257..74271695995599.9557197-CDS-E-fasciculatus_F_contig107:7257..7427Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig107 7258..7427 +
1622927568.8831935-CDS-E-fasciculatus_F_contig107:7966..81081622927568.8831935-CDS-E-fasciculatus_F_contig107:7966..8108Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig107 7967..8108 +
1695995599.9659436-CDS-E-fasciculatus_F_contig107:7966..81081695995599.9659436-CDS-E-fasciculatus_F_contig107:7966..8108Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig107 7967..8108 +
1622927568.895271-CDS-E-fasciculatus_F_contig107:8656..88331622927568.895271-CDS-E-fasciculatus_F_contig107:8656..8833Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig107 8657..8833 +
1695995599.9757583-CDS-E-fasciculatus_F_contig107:8656..88331695995599.9757583-CDS-E-fasciculatus_F_contig107:8656..8833Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig107 8657..8833 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927568.99195-UTR-E-fasciculatus_F_contig107:8833..95201622927568.99195-UTR-E-fasciculatus_F_contig107:8833..9520Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig107 8834..9520 +
1695995599.9872994-UTR-E-fasciculatus_F_contig107:8833..95201695995599.9872994-UTR-E-fasciculatus_F_contig107:8833..9520Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig107 8834..9520 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig107.555.1

>prot_E-fasciculatus_F_contig107.555.1 ID=prot_E-fasciculatus_F_contig107.555.1|Name=mRNA_E-fasciculatus_F_contig107.555.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=222bp
MASPVKDVYLIAYNLACASGWGYVLFVCVSHILAGNEPQALYDEVEKVLQ
IVQTAALMEVLHAMLGVVRSPWVTTLMQVSSRIVLVWGFMWAVPSTQGQL
GSMLCITSWACVEIPRYLFYTFGVLKSSPYPLFYLRYSLFAVLYPTGIAG
EVMTMLAGLLDLKNAQDTLRLGVGPVSVSGYIVTLALLAVYVPGGPYMYM
NMVGNRRSAFKKRNAAASKKA*
back to top

mRNA from alignment at E-fasciculatus_F_contig107:5070..9520+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig107.555.1 ID=mRNA_E-fasciculatus_F_contig107.555.1|Name=mRNA_E-fasciculatus_F_contig107.555.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=4451bp|location=Sequence derived from alignment at E-fasciculatus_F_contig107:5070..9520+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCTTCCCCCGTGAAAGACGTGTACCTCATTGCCTACAACCTCGCCTG
CGCGAGCGGGTGGGGCTACGTTCTCTTCGTGTGCGTGAGCCATATCCTTG
CCGGCAACGAGCCGCAGGCGCTTTATGATGAAGTTGAGAAGGTGCTGCAG
ATCGTGCAGACGGCAGCGCTGATGGAGGTAGGTGGGCGGGTTCGTGAGCC
ACGTGCTGTGCATCCCTTGGCAAGTAACTCATGGTGTGCTTAACATGCTC
GGTAGCGTGTCGGGAGTGCAATTATCTTGCGAAAGACCTCCAACAATATA
AAGACTCGTGTGATCAGTAGGGGTGGTTGCACGCACTGCTGTCGATCTTG
CTACATAGCTCCTGTCTACAATACTACATGTGCATATGCATACGACGGGT
GTACTCAACGGTATCTGCATACAAGCTGCGCCTGCTGTGTGCAGGGAGAT
GCGAAGCCAGCGGTGGCGAGCTCTGCAGAGATGTTTACCACAGGCCATGT
GGTACTGCTGTCAGTACTGTTTACTGTTGTGTAGTGTAGTCCAGCAGGAC
GCACGTCTGGCCTGGCGGTATGCCCGGTGCGGGCGACAGCAGCGGGCAAC
AGAGTAATCGTAGATTTCGAGTCACCGCACCGTCCAGAGTTATCGCACAG
GAGTCCGGCCCCCCGTGCAATAACAATTAGCTTCGCATGATTTAATTCGA
CTTCCGCACAGGGTGTATGACTCGTAACCCCAGGGTGGTTGAGCGCCAAC
AATTCCGAGGCAATTTGTTTCATACTCTCTACCCCCGCCAACATCCCGGA
GCTGGCATGTTGGCTCCGCTGTACTGGAGGTCCATGGCATCGTTGCAAGT
CACTGCAGTGGTTTGAAGGAGTATGACCTACCGGATGCATGTTTCTATTG
ATATTTTCATTGGATTGGTAGCCTTTCTCTACGCAACCAAACACGAGAGG
GCAGCGACAGCCAAGACTACCACCCTCTGACATATATGGCACAACTCGAC
GGCGGGATAATTCATGTGTTCGTGTGTTCGTGGTTCCTATTTCGCCGCAT
TTTATTTCGCCGCTTATTTGTTGTTGGGTGTGTGGGTGGGTGTGTTTCTC
AAGTAGACTCCATTGCGCCATCTGGCCGAACGAATGTACGCGTTTGTGCG
CGCGTTGTGTGTGGAGCCTGCAACCGAAGCAAAACTTAGATATCCGTACG
TTCGTCCGTGAAGATTCCTCCCTTGCACCGCACACACCTGAGTTATCGCA
CAGGGGGTGTGCGGTAAAATTTTACCCCCAGGGTCCTGAGTGATCGCACA
GTTCGGAGTCATCGCACCAACGAGAGATCGGAACGGTTCTTAATATGAAG
ACAACGACCCGACCGCACCGGGTTGCAGTGACTCGCAGCCTTCGGTAGTC
GTAGATACGAGCGTACAAACGGCATCCGTGTACCCCCACGCCTTCCGTTC
ATTGAACTATAAACACCGACGCCTTGTCCTTGTGAAAGGCGGTTAGGTTT
CGAGACACAAGTAGACTGCACGCAGGCGCGGCAGCTGGACATTGCCGGTA
GTCGTTAGACCCCTGCCTTTGGACCTTTTGAGGACACGCAGCGACAGATG
CGCTCAATGCGCGACCATCGTAAAGCGGTTCTTCTCAACACATTCGTGCA
ATCGAGATCGTGCCCTGTACAGCATAATCTGCTACGCAGGTCGAAAGACG
TTTGCCAAGCGCGAGAATGGCGTTTGTTCGTTTCGGATGGGATAGTCTTG
CAAAGGGAGGTCTAGTCAAGAGCGCAACGGCCAAGGTCGATCATGGGATC
TTGTCCCATTCCGTGAGGGATCTGTATGACGTTACCTTTCGCACGCTTCG
GTCGGAGAACCTTGCTACGGCATCCTCCACCCTTTGTGCACCATCCTGAC
CTCGTTATTTCCCACCGCTCCTTCCCCACGCACCCGGGACGCCAGCCCCC
CTACACATGGTGAAAAGTGCAGCAGATCGATCGTGCAAGAAGGCAGGTAG
CACGGCATGCTCACATCATTTCGAAAAAGAAAGCACATTCAACACTCAAC
CGCGTTGCAATGGGCTCGCTCTGTTGAATGTATGAACCAGCAGGATCAAC
CATGATGCGTGGCGGGCCCAAACAAGCGACGCTACACAACCAAACGACTA
TACCCCCCCCCTCCCCTCATCCGCGCGCCCGCCTTCAGGTTCTGCACGCG
ATGCTAGGAGTGGTGCGCTCCCCTTGGGTGACGACCCTCATGCAGGTGAG
CTCGAGGATCGTCCTGGTGTGGGGTTTCATGTGGGCGGTACCGTCCACCC
AGGGGCAGCTGGGCTCCATGCTGTGCATCACGAGCTGGGCGTGCGTCGAG
ATCCCGAGGTGAGAGCTTGGACGGCCGTTGCGTACATGTGTGCCTACAGC
AGTAGTAGCGTTGGTGACTCGTGCGTGAAGCAGCTTGTTTCGCGCAGTAT
ACCCAGCGGCAATCGCCGAAGATGATTGGAAGGTTTTATATTTCTTTTTC
TTTTCCGGAGATGCCGAGTCAAAGCCGGGATTAACAGCATCTTCGCCCTA
AGGAATGTTGCGTTTTGGGTATTCGCAGCGGCAGCTGTGGCCATTTTTCG
CCCTTCGGTTTTTCCGCACCACTTGCCGATATGGGGTTCACCACGCAGCA
TGATTCTGGTTACCTCTAACAACAAGCAAGGCGTACGGCACTCCGCCCAT
CCCACCTATTGCTGTATTGCTGTGACCTTTCGTATAGGAGGTAGAGGCTA
GGATCTCCCTACGAGCAACCACGCGATGTACGGTAAACGGTGTTGAGGTG
GAATGCTCTCTCTGCAACGCTGTCAAGCAGGCGATATTTCCTGGTATCAT
TTCCGCGAATCCCTCTTTAATGCGCTTGCACTGCGGTGTTTGCGCAGGTA
TCTGTTCTACACGTTCGGCGTGCTCAAGAGCTCCCCGTACCCGCTGTTCT
ACCTGCGGTATTCCCTGTTTGCTGTCCTGTACCCGACCGGGATCGCGGGC
GAGGTCATGACAATGCTGGCCGGCCTCCTGGACCTGAAGGTAAGTGTTTC
AGGTTTTGATTGCAGTCTCGTTTTGTTATCCTCCCCTGCTGCATATCCAC
ACCTTCGTGTAGTAGCGGTAATGGTAGTAGTACAAGTATAGTATGGACAG
AAGTAGTGGTGCTACTGTTGTAGTTTTCACTAGGTTTGTTGCGATCTTGT
CGACGACCTGGAACACATTGCTTCGATCTCAGGCGGCCCAACACAAGGAA
TCTGGTCTCTGAATATATATATTTCCCAACTTCGTTTGATTTCGGCGCGG
ACTTGCTTGTTCTTCAGCCACAAGTAGATCAGTTCGAGTGCCTTTACGGG
CGGGACGTGTTTCATTCCGACAAGCCAAGGATAAACAATCGCGGTTGTCC
GACCCACTATCCAAGACATGACCTCACGAGCGCCCGGACAAGCAAATGCT
CGTCCCGAGACTTGGAAGCCTCCGGCTGTCTCTCTAATTCACGGCTTCAC
ACAACCTTGAACCTGTTCTCCGTACAATATTTCGTATTCTACAGATCCCT
ACTTCCGTTTTTTTTTTGTGTGCCCCCCCGCTCCCAGAATGCCCAGGACA
CGCTGCGGCTGGGCGTGGGACCGGTTTCGGTGTCCGGCTACATCGTCACA
CTTGCCCTTCTGGCCGTGTACGTCCCGGGTGGACCGTACATGTACATGAA
CATGGTGGGCAACCGGCGTTCCGCGTTCAAGAAAAGGAACGCCGCTGCTT
CAAAGAAAGCTTGATAGTTAGAATTCAACTTTTTTCCCACCGCAAACCGC
GGTTGCGCACGAGGGCGGAGATCAACCTGCCGCTACGTAGAATAGAGAGG
TTTGGAATTTCGTGTTTCAAGGCAGTTGGGGAGTCTTTTCACGGCTACAC
CCTATCCCGTAATTTGGGCCAAAGGGACAACTAGGCGGGATATCAGGTCG
AGATCGAACGATCTCAGGGCGCGCGCGAAGCGGTAGAGCCCGGTGCGTCG
ATCATTGCAGTTAGAGCACTCGCCGTGGGCGTAGGTTTATTACAGGACGA
TGCAGATGGACGTGAATGATCCGTAGAAGGGGTCTGACTTATTTTTCCGT
TTCAATGACTTTCCGTTCATGCTTGCACTGCTGTGCGTGCATGCATACGT
GCGTGCTTGTGTGTGTGTGTTTTGTTCATCAACCGCGTTGTTAGCCGGCT
GACCAATAGAAACGCGTTAGTCGCAGTGCGGCTGAAACTAGAGCGCTCCT
CAAGGAGATGATCCGGTACACGGTGCGTAATGGGAGGCTAGGCTGTTCTG
ACGTGCGTGTGTGTATGGGCGAGGCCTGCCCCATACGTGGGGCCTGTTGC
TCCCTGCCATCTCAGACTCTGTCGGTGCACGTTCTTGCAGTAGCCTTAGC
GGGGTGGGGTCATTTTTTTTTTCAGGGTTAGGTTAGGGTAGGGGGCATAT
A
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig107:5070..9520+

>mRNA_E-fasciculatus_F_contig107.555.1 ID=mRNA_E-fasciculatus_F_contig107.555.1|Name=mRNA_E-fasciculatus_F_contig107.555.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1332bp|location=Sequence derived from alignment at E-fasciculatus_F_contig107:5070..9520+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCTTCCCCCGTGAAAGACGTGTACCTCATTGCCTACAACCTCGCCTG
CGCGAGCGGGTGGGGCTACGTTCTCTTCGTGTGCGTGAGCCATATCCTTG
CCGGCAACGAGCCGCAGGCGCTTTATGATGAAGTTGAGAAGGTGCTGCAG
ATCGTGCAGACGGCAGCGCTGATGGAGATGGCTTCCCCCGTGAAAGACGT
GTACCTCATTGCCTACAACCTCGCCTGCGCGAGCGGGTGGGGCTACGTTC
TCTTCGTGTGCGTGAGCCATATCCTTGCCGGCAACGAGCCGCAGGCGCTT
TATGATGAAGTTGAGAAGGTGCTGCAGATCGTGCAGACGGCAGCGCTGAT
GGAGGTTCTGCACGCGATGCTAGGAGTGGTGCGCTCCCCTTGGGTGACGA
CCCTCATGCAGGTGAGCTCGAGGATCGTCCTGGTGTGGGGTTTCATGTGG
GCGGTACCGTCCACCCAGGGGCAGCTGGGCTCCATGCTGTGCATCACGAG
CTGGGCGTGCGTCGAGATCCCGAGGTTCTGCACGCGATGCTAGGAGTGGT
GCGCTCCCCTTGGGTGACGACCCTCATGCAGGTGAGCTCGAGGATCGTCC
TGGTGTGGGGTTTCATGTGGGCGGTACCGTCCACCCAGGGGCAGCTGGGC
TCCATGCTGTGCATCACGAGCTGGGCGTGCGTCGAGATCCCGAGGTATCT
GTTCTACACGTTCGGCGTGCTCAAGAGCTCCCCGTACCCGCTGTTCTACC
TGCGGTATTCCCTGTTTGCTGTCCTGTACCCGACCGGGATCGCGGGCGAG
GTCATGACAATGCTGGCCGGCCTCCTGGACCTGAAGGTATCTGTTCTACA
CGTTCGGCGTGCTCAAGAGCTCCCCGTACCCGCTGTTCTACCTGCGGTAT
TCCCTGTTTGCTGTCCTGTACCCGACCGGGATCGCGGGCGAGGTCATGAC
AATGCTGGCCGGCCTCCTGGACCTGAAGAATGCCCAGGACACGCTGCGGC
TGGGCGTGGGACCGGTTTCGGTGTCCGGCTACATCGTCACACTTGCCCTT
CTGGCCGTGTACGTCCCGGGTGGACCGTACATGTACATGAACATGGTGGG
CAACCGGCGTTCCGCGTTCAAGAAAAGGAACGCCGCTGCTTCAAAGAAAG
CTTGAAATGCCCAGGACACGCTGCGGCTGGGCGTGGGACCGGTTTCGGTG
TCCGGCTACATCGTCACACTTGCCCTTCTGGCCGTGTACGTCCCGGGTGG
ACCGTACATGTACATGAACATGGTGGGCAACCGGCGTTCCGCGTTCAAGA
AAAGGAACGCCGCTGCTTCAAAGAAAGCTTGA
back to top