mRNA_E-fasciculatus_F_contig1068.539.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1068.539.1
Unique NamemRNA_E-fasciculatus_F_contig1068.539.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1068.539.1 vs. uniprot
Match: D7FWH3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWH3_ECTSI)

HSP 1 Score: 347 bits (891), Expect = 2.850e-113
Identity = 174/180 (96.67%), Postives = 178/180 (98.89%), Query Frame = 1 
Query:    1 MPADSLPRDDEGSETPVFKRRKTAASPLLATPARVLNQIQNGDTLDTGRVLQALCNAVISSSVDEDEDPHALKLLAELLAEDGVDPNAGDEALWDNYGGSPLYQACALDLPSTAKALLDHGASVVQVYKGQTPLQAALAQKDSRCVKVIMEHIEKLETQAREGRGGRGPRRSNHGSQCER 540
            MP++SLPRDDEGSETPVFKRRKTAASPLLATPARVL+QIQNGDTLDTGRVLQALCNAVISSSVDEDEDPHALKLLAELLAEDGVDPNAGDEALWDNYGGSPLYQACALDLP TAKALLDHGASVVQVYKGQTPLQAALAQK SRCVKVIMEHIEKLETQAREGRGG+GPRRSNHGSQCER
Sbjct:    1 MPSESLPRDDEGSETPVFKRRKTAASPLLATPARVLSQIQNGDTLDTGRVLQALCNAVISSSVDEDEDPHALKLLAELLAEDGVDPNAGDEALWDNYGGSPLYQACALDLPCTAKALLDHGASVVQVYKGQTPLQAALAQKKSRCVKVIMEHIEKLETQAREGRGGKGPRRSNHGSQCER 180
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1068.539.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FWH3_ECTSI2.850e-11396.67Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1068contigE-fasciculatus_F_contig1068:9793..14802 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-26_006620.1
Exons4
Model size2085
Cds size543
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1068.539.1prot_E-fasciculatus_F_contig1068.539.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1068 9793..13260 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927566.0110047-CDS-E-fasciculatus_F_contig1068:9792..99151622927566.0110047-CDS-E-fasciculatus_F_contig1068:9792..9915Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1068 9793..9915 +
1695995599.0015438-CDS-E-fasciculatus_F_contig1068:9792..99151695995599.0015438-CDS-E-fasciculatus_F_contig1068:9792..9915Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1068 9793..9915 +
1622927566.0230432-CDS-E-fasciculatus_F_contig1068:11058..112231622927566.0230432-CDS-E-fasciculatus_F_contig1068:11058..11223Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1068 11059..11223 +
1695995599.01604-CDS-E-fasciculatus_F_contig1068:11058..112231695995599.01604-CDS-E-fasciculatus_F_contig1068:11058..11223Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1068 11059..11223 +
1622927566.0320804-CDS-E-fasciculatus_F_contig1068:12132..122851622927566.0320804-CDS-E-fasciculatus_F_contig1068:12132..12285Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1068 12133..12285 +
1695995599.0274537-CDS-E-fasciculatus_F_contig1068:12132..122851695995599.0274537-CDS-E-fasciculatus_F_contig1068:12132..12285Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1068 12133..12285 +
1622927566.0713024-CDS-E-fasciculatus_F_contig1068:13158..132601622927566.0713024-CDS-E-fasciculatus_F_contig1068:13158..13260Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1068 13159..13260 +
1695995599.0370257-CDS-E-fasciculatus_F_contig1068:13158..132601695995599.0370257-CDS-E-fasciculatus_F_contig1068:13158..13260Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1068 13159..13260 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927566.0891058-UTR-E-fasciculatus_F_contig1068:13260..148021622927566.0891058-UTR-E-fasciculatus_F_contig1068:13260..14802Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1068 13261..14802 +
1695995599.0518525-UTR-E-fasciculatus_F_contig1068:13260..148021695995599.0518525-UTR-E-fasciculatus_F_contig1068:13260..14802Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1068 13261..14802 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1068.539.1

>prot_E-fasciculatus_F_contig1068.539.1 ID=prot_E-fasciculatus_F_contig1068.539.1|Name=mRNA_E-fasciculatus_F_contig1068.539.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=181bp
MPADSLPRDDEGSETPVFKRRKTAASPLLATPARVLNQIQNGDTLDTGRV
LQALCNAVISSSVDEDEDPHALKLLAELLAEDGVDPNAGDEALWDNYGGS
PLYQACALDLPSTAKALLDHGASVVQVYKGQTPLQAALAQKDSRCVKVIM
EHIEKLETQAREGRGGRGPRRSNHGSQCER*
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mRNA from alignment at E-fasciculatus_F_contig1068:9793..14802+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1068.539.1 ID=mRNA_E-fasciculatus_F_contig1068.539.1|Name=mRNA_E-fasciculatus_F_contig1068.539.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=5010bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1068:9793..14802+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCCTGCCGACAGCTTGCCGAGGGATGACGAAGGGTCCGAAACACCAGT
CTTCAAGAGGAGGAAAACTGCGGCGTCTCCATTGCTCGCCACCCCGGCCC
GCGTTCTCAATCAAATCCAAAATGTGAGGAAGGAGAGTTGAGAGGGTTTT
ATGTTATGTACAATACACGGAGAGCCTGGTCTAGCCGCAACCATCCCTAG
CTCCCATAACGGCTAGCGTCTGAGCATGAGTTCAAGATGAACGCATTGCT
TCCTTCCAAATCTTGGCCAGAGTCCCGAGACCCTCACGTCGCTCGCTACA
ATACAATAGCTTCTCTCACGGCTGTTGTGTATTGTAGTCTAGTTGTACGT
GAAGATGTTTGGAGCTTGGAGCCGTCGAGCTGTTCGCTGCTGTTTCACAT
ACTGCTGTACATATGCATATTAGCCCGCAAAACACCACAAGACACACAGC
CGTCTTTGTATGCATACAAAACATGTGCAGCAGCTGCGATGGTCTTCTTG
CTATAATACGAATCGTTCGAATACGAATCGTTCGAATCGTTGTTATCTTG
TTATCTTCACCCCGTCCTTGCGCGCGTTGATGTTGTACATAGTAGTCTCA
GGGTAGTGGCCTTGTTACCCCGGCTTGCCGTTCCCATCACTGACGACATA
ATCAACCTGCACCTTGAGGCCTTGAGGTGGCATGTGTACCAAAACTTGTA
GACTAGTCTAGAGATGGCCGGCTCTTCATCTACGAATACGTGTATGTCGG
AGCCCGATCCAATTTCGGTGCACAGGCGGTCACGGAGAACAAGTGTTACA
TATAATTGCACTCCGATATACTGCTGTACATATCGTGCAGTACCTGTCGT
AGAGAGAGCCGTGTGGTTTGCATGTTTACAGAGCTCTTGTTACACACGTA
GTTTGCTATTGTTGTCGACATGAGAGTCGGTACTCGAACTACAGCAGTAA
CGGGAAGGTATTGTATTGTAGTTACAGTACCGTGTTCCCGTCCTTTCACC
GCCANNNNNNNNNNCCGCCAATGTCGGTGCTGCAGTACACGGCTCGTAGC
GGATGCTCGCAGTGCAGTATGCTTCTGCAGCACGACAATCAATCTAGCTG
TAGCTGTAGCTGTAGCTGTAAGACCCTGGGCGCATCTATCTGCAGCATGC
ATGCCCTGGTCAGGTCAGGCTCTCCTCTCTTGTGGACGAGGGCCTTCTCT
GTCTCTCGCTCTTATTGCTGTGCTACTTTGCTGCTGCTGCTGCTGCTGCT
GCTGCTGCTGCTGCAGGGTGACACCCTCGACACCGGGCGGGTGCTCCAAG
CATTGTGCAACGCGGTGATATCTTCCAGCGTGGACGAGGACGAGGACCCG
CACGCCCTCAAGCTACTGGCCGAGCTGCTTGCCGAGGACGGGGTGGACCC
CAACGCCGGAGACGAAGCTCTGTGGGACAACGTGAGAAGAAGTTTCTTTT
TTGTTGTCTGCCCTGGGGGGGGGGCAGACCAGTGCTCACCTCTCTCTCTC
TCTATGTCCGTGGGAGTGTTTTAAGACGGGCATGGGTTTGTGTCTTTTGG
TGATGGTCACAGAGAACGTGTGCGTGTCGTGTTGTTTTCCAGAACTAACG
CCGCGTTTGCGAACCCGGCCTTCCGTTCGGACGTTTCGTAGAGCGGCAAC
AAAGCGACACACTGCTGTTTGGCTCACTCAACTGGTGGTGTAGACGTGTA
GACATACAGTAGATAGAACGTTCTAGGGTGCGCTATTGCGTTGCTGCTTT
CGACGGAGTTGGAGTCGGTGTTTGCGGAGTGCGTGCCGCAAGGAAGGGCG
ATCGATGCTCGTCTGGCTCTATTCAATCAGCAACGATATCAGCGAAGCTA
TTGCATTGTACAGCATTGTATCAATTGCATTGTATCAATAACCTTCCACG
CGTCCCGCAACGGGACAGTAGTCAGGCAGGAAAACGGCAACTGCAACAGT
ATGCCGCAAGTATTTCATCACACCCTGTGTCCCCCGTGTATGGATGTTTT
TCATGGTCGCCTCACGTACTGTATGCTAGAACAGAAAATATTAGAGAAGA
TAGAACACTATTAGAACACTATTAGACTACTATTAGAACACTATTAGACT
AGTATTTGTATGGTGGTTCCGGCCAGCTCGATATCTCGATATTTTCGACA
CGCGTAGATATAGCTCTTATTCTGAGCGTCGCTCAAGGCAATACGATCCC
CAGTTGACGTGTGCATCGCCCCCTATCCAACGTACCGCTGTCAAGCAGCA
CACACATGAGCATCTCCCTCCGTCCCTGCCTTCCCGTGCCAATATCGCCT
ACACACCTGCTGTTGGTGCTGCGCGTGTCGTGTGTTGCAGTACGGCGGCA
GCCCCCTGTACCAGGCGTGCGCGCTAGACCTCCCTTCCACTGCGAAGGCT
CTGCTGGACCACGGGGCGTCGGTCGTCCAGGTGTACAAGGGACAGACGCC
TCTACAGGCGGCGCTCGCCCAGAAAGATTCCCGCTGCGTCAAGGTGAGGA
GGGACTAGAATAGCCGTCGGTTGGTGCTGGTGCTGGTGCTGCTAGACAAC
GCTGTTTGGTTTGCGGCACTCGAAAGACTCTAAAGACTACGGGGGGCATG
CTTCTCGTGGTGGTGTGTTTGTGGCGTGGTAGATAAAAGCATGGATGGAG
GGATGAGGGGTGTATACTGTGACACGGTATGATGCGCATATTGGGGTTTT
GCTCGGAGTTGGGTGGGAAGTACTCGCACTCGAGGTTGGGTTTAGATGCA
CGCGCCGATAGGCATTGGCTGCCATCTACTTGACGGAGGACCTCGCCGTA
CAAACCTCCATTGCTGAGTTCGGCATGCTGCTGTTGGTGCACGGTTTCAT
GGGAACAGGGACACCTCTCCCCCCGTGCAGGAAGGGCTGCAGCAGGTGTA
GGGGTGTGCTCAACGCCATGTCGTCGCGATATGACGCTCGCGTTGGACAC
CTCCTGTGCTACCCCTCTTACCTACAATATCGAAACACTATTATTATTAT
TATTATTATTATTATTATTAGGTGTATTAGGTGTTCCTCTCCTCTCCTCT
GTCGTGACGTGACGTCTAATTTAACATTTACCATTTAACCCAAGAGCAAC
TGTCGTAGAAAGCGTCCGCGATTGTTTCGGCAAGGAGTTCCTGCGGCGGG
TCTGCCGCAGTCACGCACAACGGCCAAATCGACTTGGGTGCTGATTAATT
CATGGGACGTACCCCCTGCTCTTGCCGACAAGTTTAGCGCTACAGTAGTT
GTGAGAGGTTATGGGATGGTGCAGTCTCGTACATTGTAACCGCCGCCCTG
GTGTTACCCTAAAACACACGTTTTCCCCTCTTGTCTCCGTGTCGATCTTC
CTGCCACTACCGATAGGTCATCATGGAACACATCGAAAAGCTCGAGACGC
AAGCGCGCGAGGGGAGAGGAGGAAGGGGCCCCAGGCGCTCCAATCACGGT
AGCCAGTGCGAACGCTAGCAGCAGCCGGCGCACCGTAGCTAAATAGTGTC
GCAAGGGTAAAGGCGTGATGACGGGGGGGTTGGGGTAAAGTGAGTAAGGA
GGCACGCGTTGCTGTTGCTAGCGCAAGCACATACGCAAAGACGGCGAGTG
CAGGGGAGGCCTGATTCTCTCTCGCTCGCTCGAGATCGACGCGGTGTTGC
CATTTTTTGCGGGCATGGCACGTAATGTGTGGTTGCTGAGGCGATTGATT
GCAATGGAAAACCCGTGTTGGGCGTGTGAGGAAAAGCCACCCCTCCCCGC
ATGCTAGCTAGTGAAGTGTGTTGTTACACTTGGAAATAATTTCAATGACC
GAAGGAAGAAGGAAGAAGGAAGAAGGAAGGACCTCGACCGACAAAACAAT
CACGATGATGATGGTCGATGGTACAGTACCTTCGCGCAGCTGGTCCTGTT
TTGTCCTGTTTTGGGCGGCTTGTCAAGCGAACCAGCAGGTGCATGTGTAG
CCCCCCCCATTGTTGCTGCCGTACGTTGTACTAGAGTAAACAATAACAAT
GTGCCTGCTTGAAAACGTGGTACCAATAAGGACGTGTTTGCTGCGTTGTT
TTTCATTGTCTGGGTTGATGTGCTGTATCTTGTATGTGCCGTAACTAACT
ACTGTGGTGGGTATTGGTGCCGTGCGTGTTGCGATCGATAGCTAACGATA
AAAGTTTTTCTGATTTGGAAACACCCGGTCCACTTTCTGGCGACATGTTA
CCGAACCGTGCTGTATTACGTATGCGTTTTTTTTGTTTCCGTCGATTTTT
GCGGTTGGAATGCGTAAGTAAATATGCCCCCGCCGGACGACGTCGTAGCT
GTTGGAATGTAGCTTTGCACCGGTGGCAAGTTTTTGGTTTTTTGCCCGGA
GTTTTGCGATGCCGCTTTGGCCAAAGGAGGAAATTCCAATGCTTCAAGTC
ACGACTTCGATTTCTACAACACAGCTGTCCCGTGTGTGTAAGTTCTTTTT
TCGCACCCGACCGGTATGTATTGGTGGGTGTTTGGTGTATATGTAGAGGC
GATTTACAGCATGATCATTGCATTTTTATGGCGTTCTCGTGGAAAGATTG
AGAAAAGTGAGAGTGTTCTGGCTCGAGTTCGCGCGACCTTTGACGCCCAG
TGCGATAGGGGCAGGAGTAGACCGCAGGTGTTGATATCACTCAATTTGCT
CAAATGCATGGTGGGTGTGAAGTTGAGATGCAACGTTGACAGTTGTCGAC
ATGTTGGCGTGACGAGTGTGGCGCTATGCTGCTGTGGTAAAACTTCATGA
CTCACTTGACAAGCGTATTATTGCGAAGGCGTTCGCTTCGCGGTAGCACT
ATGTGTAACGTTGCCTACTTTGCCGTAAAGTCATGTCTGCGGTTTTGTAC
CGTCAAGTCACCAGAAGAACCCTCCAATAGTCTAATTGTGTGTTCGGTAT
TCCTAGTGTTGCTAGTAGACGGCGTGGCACTTGTAGCAGAAAAACGCCAT
ATTTTCGTAGTGCTTCCCGTCACAGAATCAGAAGCACACACAGTATCCAA
CGATGGGAGG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1068:9793..14802+

>mRNA_E-fasciculatus_F_contig1068.539.1 ID=mRNA_E-fasciculatus_F_contig1068.539.1|Name=mRNA_E-fasciculatus_F_contig1068.539.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1086bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1068:9793..14802+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCCTGCCGACAGCTTGCCGAGGGATGACGAAGGGTCCGAAACACCAGT
CTTCAAGAGGAGGAAAACTGCGGCGTCTCCATTGCTCGCCACCCCGGCCC
GCGTTCTCAATCAAATCCAAAATATGCCTGCCGACAGCTTGCCGAGGGAT
GACGAAGGGTCCGAAACACCAGTCTTCAAGAGGAGGAAAACTGCGGCGTC
TCCATTGCTCGCCACCCCGGCCCGCGTTCTCAATCAAATCCAAAATGGTG
ACACCCTCGACACCGGGCGGGTGCTCCAAGCATTGTGCAACGCGGTGATA
TCTTCCAGCGTGGACGAGGACGAGGACCCGCACGCCCTCAAGCTACTGGC
CGAGCTGCTTGCCGAGGACGGGGTGGACCCCAACGCCGGAGACGAAGCTC
TGTGGGACAACGGTGACACCCTCGACACCGGGCGGGTGCTCCAAGCATTG
TGCAACGCGGTGATATCTTCCAGCGTGGACGAGGACGAGGACCCGCACGC
CCTCAAGCTACTGGCCGAGCTGCTTGCCGAGGACGGGGTGGACCCCAACG
CCGGAGACGAAGCTCTGTGGGACAACTACGGCGGCAGCCCCCTGTACCAG
GCGTGCGCGCTAGACCTCCCTTCCACTGCGAAGGCTCTGCTGGACCACGG
GGCGTCGGTCGTCCAGGTGTACAAGGGACAGACGCCTCTACAGGCGGCGC
TCGCCCAGAAAGATTCCCGCTGCGTCAAGTACGGCGGCAGCCCCCTGTAC
CAGGCGTGCGCGCTAGACCTCCCTTCCACTGCGAAGGCTCTGCTGGACCA
CGGGGCGTCGGTCGTCCAGGTGTACAAGGGACAGACGCCTCTACAGGCGG
CGCTCGCCCAGAAAGATTCCCGCTGCGTCAAGGTCATCATGGAACACATC
GAAAAGCTCGAGACGCAAGCGCGCGAGGGGAGAGGAGGAAGGGGCCCCAG
GCGCTCCAATCACGGTAGCCAGTGCGAACGCTAGGTCATCATGGAACACA
TCGAAAAGCTCGAGACGCAAGCGCGCGAGGGGAGAGGAGGAAGGGGCCCC
AGGCGCTCCAATCACGGTAGCCAGTGCGAACGCTAG
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