mRNA_E-fasciculatus_F_contig10614.492.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig10614.492.1
Unique NamemRNA_E-fasciculatus_F_contig10614.492.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig10614.492.1 vs. uniprot
Match: D7FUE1_ECTSI (Hydroxymethylglutaryl-CoA reductase (NADPH) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUE1_ECTSI)

HSP 1 Score: 765 bits (1976), Expect = 2.180e-272
Identity = 423/442 (95.70%), Postives = 426/442 (96.38%), Query Frame = 1
Query:    1 RPVKQRPAEPRPRWEVLRVLNYLVIGLFVCSITYVVFNYRTMSHAENGNGGLFPILVIWSVCMAYFFGFFGISFLDTSAMERSPSSFGLSHLDTHLYTSERKRAVQFAEPPAKG-ASNGTMCGKETPQLASSXXXXXXXXXXXXXXXXXXSAKSLKDKTAGTPPASLGPVPDGEDYSTMTDEEVAACVVTGKLKDHQLEKKLGDHARAVVVRRSLFERRIGRSMESLPVEGYDYERIFGANCEIVCGYIPIPVGIVGPLTLNGQEVYVPMATTEGCLVASTXXXXXXXXXXXXXXAALLKDGITRAPCLRMPDAMAAADLKKWSEMPENFEAIKAAFQTTTRFGKLQGLMSTVAGRNVYLRFNCFAGDAMGMNMVSKGVLAVIDLLQKEFPEMELVAISGNMCTDKKSAAINWVEGRGKSIVCEARIPGKHVEATLKTTVKV 1323
            RPVKQRPAEPRPRWEVLRVLNYLVIGLFVCSITYVVFNYRTMSHAENGNGGLFPILVIWSVCMAYFFGFFGISFLDTSAMERSPSSFGLSHLDTHLY SERKRAVQFAEPPAKG ASNGTMCGKETPQLASSXXXXXXXXXXXXXXXXXX            P  +LGPVPDGEDYSTMTDEEVAACVVTGKLKDHQLEKKLGDHARAVVVRRSLFERRIGRSMESLPVEGYDYERIFGANCEIVCGYIPIPVGIVGPLTLNGQEVYVPMATTEGCLVASTXXXXXXXXXXXXXXAALLKDGITRAPCLRMPDAMAAADLKKWSEMP+NFEAIKAAFQTTTRFGKLQGLMSTVAGRNVYLRFNCFAGDAMGMNMVSKGVLAV+DLLQKEFPEMELVAISGNMCTDKKSAAINWVEGRGKSIVCEARIPGKHVEATLKTTVKV
Sbjct:   54 RPVKQRPAEPRPRWEVLRVLNYLVIGLFVCSITYVVFNYRTMSHAENGNGGLFPILVIWSVCMAYFFGFFGISFLDTSAMERSPSSFGLSHLDTHLYASERKRAVQFAEPPAKGSASNGTMCGKETPQLASSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXP--ALGPVPDGEDYSTMTDEEVAACVVTGKLKDHQLEKKLGDHARAVVVRRSLFERRIGRSMESLPVEGYDYERIFGANCEIVCGYIPIPVGIVGPLTLNGQEVYVPMATTEGCLVASTXXXXXXXXXXXXXXAALLKDGITRAPCLRMPDAMAAADLKKWSEMPDNFEAIKAAFQTTTRFGKLQGLMSTVAGRNVYLRFNCFAGDAMGMNMVSKGVLAVVDLLQKEFPEMELVAISGNMCTDKKSAAINWVEGRGKSIVCEARIPGKHVEATLKTTVKV 493          
BLAST of mRNA_E-fasciculatus_F_contig10614.492.1 vs. uniprot
Match: A0A835YX65_9STRA (3-hydroxy-3-methylglutaryl coenzyme A reductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX65_9STRA)

HSP 1 Score: 460 bits (1184), Expect = 3.150e-155
Identity = 238/442 (53.85%), Postives = 289/442 (65.38%), Query Frame = 1
Query:   16 RPAEPRPRWEVLRVLNYLVIGLFVCSITYVVFNYRTMS---HAENGN--GGLFPILVIWSVCMAYFFGFFGISFLDTSAMERSPSSFGLSHLDTHLYTSERKRAVQFAEPPAKGASNGTMCGKETPQLASSXXXXXXXXXXXXXXXXXXSAKSLKDKTAGTPPASLGPVPDGEDYSTMTDEEVAACVVTGKLKDHQLEKKLGDHARAVVVRRSLFERRIGR--SMESLPVEGYDYERIFGANCEIVCGYIPIPVGIVGPLTLNGQEVYVPMATTEGCLVASTXXXXXXXXXXXXXXAALLKDGITRAPCLRMPDAMAAADLKKWSEMPENFEAIKAAFQTTTRFGKLQGLMSTVAGRNVYLRFNCFAGDAMGMNMVSKGVLAVIDLLQKEFPEMELVAISGNMCTDKKSAAINWVEGRGKSIVCEARIPGKHVEATLKTTVK 1320
            R  EP PRWEVL VLNY V+G+F  S+ YV FNYR +S    A +G+  GGL+PIL++W  C+AYFFGFFG+SFLD  AM+RSPS+FGL HLD  L  S  +                                                                       D + ++DEEVA  V++G +KDHQLE +LGDH RAV VRR +F  R+GR  ++ +LP  GYDY R+FGANCEIVCGY+P+PVGIVGPL L+G+EVYVPMATTEGCLVAST              + +LKDGITRAPCLRMPD + AA +K+W E P NF  +KAAF++TT FG+L  +   VAGRNVYLRF C AGDAMGMNMVSKG LA +DLL + FPE+EL+AISGNMCTDKK AAINW+EGRGKS+VCEARIPG++VE+TLKTTV+
Sbjct:   19 RKPEPLPRWEVLSVLNYFVVGVFAASLAYVAFNYRAVSSDMQAGSGSKGGGLYPILLVWCGCLAYFFGFFGVSFLDKEAMQRSPSTFGLGHLDAGLAPSSPRARXXXXXXXXXXXXXXXXXXXXXXXXT--------------------------------------------DLAALSDEEVAEAVLSGAVKDHQLEPRLGDHTRAVAVRRRVFAARLGRDDALRALPHAGYDYARVFGANCEIVCGYVPLPVGIVGPLLLDGREVYVPMATTEGCLVASTNRGCKAISQGGGARSVVLKDGITRAPCLRMPDTIGAARVKQWVEAPANFARVKAAFESTTSFGRLNAVTGAVAGRNVYLRFVCAAGDAMGMNMVSKGCLAAVDLLTEAFPELELIAISGNMCTDKKPAAINWIEGRGKSVVCEARIPGRYVESTLKTTVR 416          
BLAST of mRNA_E-fasciculatus_F_contig10614.492.1 vs. uniprot
Match: A0A7S3GVF0_9STRA (3-hydroxy-3-methylglutaryl coenzyme A reductase n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GVF0_9STRA)

HSP 1 Score: 408 bits (1049), Expect = 5.020e-134
Identity = 226/443 (51.02%), Postives = 295/443 (66.59%), Query Frame = 1
Query:   16 RPAEP--RPRWEVLRVLNYLVIGLFVCSITYVVFNYR-TMSHAENGNGGL----FPILVIWSVCMAYFFGFFGISFLDTSAMERSPSSFGLSHLDTHLYTSERKRAVQFAEPPAK-GASNGTMCGKETPQLASSXXXXXXXXXXXXXXXXXXSAKSL-KDKTAGTPPASLGPVPDGEDYSTMTDEEVAACVVTGKLKDHQLEKKLGDHARAVVVRRSLFERRIGRSMESLPVEGYDYERIFGANCEIVCGYIPIPVGIVGPLTLNGQEVYVPMATTEGCLVASTXXXXXXXXXXXXXXAALLKDGITRAPCLRMPDAMAAADLKKWSEMPENFEAIKAAFQTTTRFGKLQGLMSTVAGRNVYLRFNCFAGDAMGMNMVSKGVLAVIDLLQKEFPEMELVAISGNMCTDKKSAAINWVEGRGKSIVCEARIPGKHVEATLKTTV 1317
            +P +P   P+W VL+ +N +V+ +FV SI Y+V NYR ++S        +    FP++V+WS C+AYFFGFFGISF+DT  +  SPS++GL H      +   +      E  AK  A  G++    T    S                   S   +  DK   T PA      D  D++ + DEEV   ++TG LKD+QLEKKLGD+ RAV VRRSL+E  + + +  +P  GYDY ++FGANCEIV GY+P+P+G+ GPL +NG+ VY+PMATTEGCLVAST XXXXXXXXXXXX + ++KD ITRAPCLRMP AM AA +K+W  +PEN+  ++ AF +TT +GKL G+ +TVAGRNVYLRFNC +GDAMGMNMVSKG L  ID+LQ +FP++ L+AISGNMCTDKK AAINW+ GRGKS+V EA IP   V + LK+ V
Sbjct:    9 KPLKPASEPKWAVLQAMNVIVLAVFVGSIAYMVVNYRNSLSQPTESPSPITNMFFPMMVLWSCCLAYFFGFFGISFVDTKVLSESPSTYGLQHFPQPGESESEEEEPANQETKAKTNAPFGSLYVAPTHNTLSQNFTPGAGFNAPATSHTARSDGPICSDKRPATTPAVSA---DDIDFTVLADEEVLGHLITGTLKDYQLEKKLGDYERAVAVRRSLYEHVLEKDLSLIPHTGYDYNKVFGANCEIVIGYVPLPLGLAGPLIINGEPVYIPMATTEGCLVASTNXXXXXXXXXXXXYSVVMKDAITRAPCLRMPSAMRAAAVKRWVGVPENYALLEQAFNSTTNYGKLAGVEATVAGRNVYLRFNCMSGDAMGMNMVSKGCLKAIDVLQAQFPDLVLIAISGNMCTDKKPAAINWILGRGKSVVVEAIIPESVVTSVLKSNV 448          
BLAST of mRNA_E-fasciculatus_F_contig10614.492.1 vs. uniprot
Match: A0A6H5KHX7_9PHAE (Hydroxymethylglutaryl-CoA reductase (NADPH) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHX7_9PHAE)

HSP 1 Score: 398 bits (1023), Expect = 6.940e-134
Identity = 214/224 (95.54%), Postives = 219/224 (97.77%), Query Frame = 1
Query:  664 SMESLPVEGYDYERIFGANCEIVCGYIPIPVGIVGPLTLNGQEVYVPMATTEGCLVASTXXXXXXXXXXXXXXAALLKDGITRAPCLRMPDAMAAADLKKWSEMPENFEAIKAAFQTTTRFGKLQGLMSTVAGRNVYLRFNCFAGDAMGMNMVSKGVLAVIDLLQKEFPEMELVAISGNMCTDKKSAAINWVEGRGKSIVCEARIPGKHVEATLKTTVKVKAKG 1335
            S+  LP +GYDYERIFGANCEIVCGYIPIPVGIVGPLTLNGQEVYVPMATTEGCLVASTXXXXXXXXXXXXXXAALLKDGITRAPCLRMPDAMAAADLKKWSE PENFEAIKAAFQTTTRFGKLQGLMSTVAGRNVYLRFNCFAGDAMGMNMVSKGVLAV+DLLQ+EFPEMELVAISGNMCTDKKSAAINWVEGRGKSIVCEARIPGKHVEATLKTTVK +AKG
Sbjct:   10 SLAILP-QGYDYERIFGANCEIVCGYIPIPVGIVGPLTLNGQEVYVPMATTEGCLVASTXXXXXXXXXXXXXXAALLKDGITRAPCLRMPDAMAAADLKKWSETPENFEAIKAAFQTTTRFGKLQGLMSTVAGRNVYLRFNCFAGDAMGMNMVSKGVLAVVDLLQEEFPEMELVAISGNMCTDKKSAAINWVEGRGKSIVCEARIPGKHVEATLKTTVKARAKG 232          
BLAST of mRNA_E-fasciculatus_F_contig10614.492.1 vs. uniprot
Match: A0A7S2EB74_TRICV (3-hydroxy-3-methylglutaryl coenzyme A reductase (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EB74_TRICV)

HSP 1 Score: 352 bits (902), Expect = 1.180e-111
Identity = 204/434 (47.00%), Postives = 255/434 (58.76%), Query Frame = 1
Query:   34 PRWEVLRVLNYLVIGLFVCSITYVVFNYRTMSHAENGNGGLFPILVIWSVCMAYFFGFFGISFLDTSAMERSPSSFGLSHLDTHLYTSERKRAVQFAEPPAKGASNGTMCGKETPQLASSXXXXXXXXXXXXXXXXXXSAKSLKDKTAGTPPASLGPVPDGEDYSTMTDEEVAACVVTGKLKDHQLEKKLGDHARAVVVRRSLFERRI-----GRSMESLPVE-GYDYERIFGANCEIVCGYIPIPVGIVGPLTLNGQEVYVPMATTEGCLVASTXXXXXXXXXXXXXXAALLKDGITRAPCLRMPDAMAAADLKKWSEMPENFEAIKAAFQTTTRFGKLQGLMSTVAGRNVYLRFNCFAGDAMGMNMVSKGVLAVIDLLQKEFPEMELVAISGNMCTDKKSAAINWVEGRGKSIVCEARIPGKHVEATLKTTV 1317
            P+W VL+ LN +    F+ S+  + F      H  +    L   + IWS  + YFFGFFGISF+D      +      +                   P  K A  G+    E PQ A+                   SA    D T+  P       P+      M D E+AA V++G +KDHQLEK L   ARAV VRR +FER++     G +++ LP E   DY R+ GANCEIV GY+P+P G++GPLTL+G+ VYVPMATTEGCLVAS               +A+++DGITRAPC+RM  AM AA+LK W E P NF  +K+AF++TT FGKL G   TVAGRNVYLR  CF+GDAMGMNMVSKG LAVI+LL+  FP +ELVA+SGNMCTDKK+AA NW+EGRGKS+V EA IP   V ATLKTTV
Sbjct:   99 PKWGVLKALNVVAALAFLFSV--IRFASDASRHMSDSTS-LLKFMSIWSALLCYFFGFFGISFVDAEGFSVAGEETKTTEXXXXXXXXXXXXXXXXXGPGKKTAPAGSRSIPEKPQHAN-------------LHPPAPSAPVCSDPTSRAPITKKALPPN---LQGMPDNEIAALVLSGVVKDHQLEKLLSP-ARAVPVRRIVFERKLSSLNRGGALDELPHEPSLDYGRVHGANCEIVVGYVPLPCGVIGPLTLDGETVYVPMATTEGCLVASANRGCKAISQGGGARSAVIRDGITRAPCVRMRSAMEAAELKLWCEDPANFARLKSAFESTTSFGKLLGAHPTVAGRNVYLRLRCFSGDAMGMNMVSKGSLAVIELLRSTFPSLELVALSGNMCTDKKAAATNWIEGRGKSVVVEATIPKDVVRATLKTTV 512          
BLAST of mRNA_E-fasciculatus_F_contig10614.492.1 vs. uniprot
Match: A0A7S1Y0Q7_9STRA (3-hydroxy-3-methylglutaryl coenzyme A reductase n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1Y0Q7_9STRA)

HSP 1 Score: 343 bits (881), Expect = 4.000e-111
Identity = 173/269 (64.31%), Postives = 204/269 (75.84%), Query Frame = 1
Query:  520 DYSTMTDEEVAACVVTGKLKDHQLEKKLGDHARAVVVRRSLFERRIGRS--MESLPVEGYDYERIFGANCEIVCGYIPIPVGIVGPLTLNGQEVYVPMATTEGCLVASTXXXXXXXXXXXXXXAALLKDGITRAPCLRMPDAMAAADLKKWSEMPENFEAIKAAFQTTTRFGKLQGLMSTVAGRNVYLRFNCFAGDAMGMNMVSKGVLAVIDLLQKEFPEMELVAISGNMCTDKKSAAINWVEGRGKSIVCEARIPGKHVEATLKTTVK 1320
            + + + DEE+   V  G +KDH LEKKLGD  RAV VRR+L+ERR+G +   E LPV+ +DYERIFGANCEIV GY+P+P G+VGPL L+G+ VYVPMATTEGCLVAST              A +LKDGITRAPC+ MP AMAAADLK W E PENF+AI+ AF +TT FG+L+    T+AGRNVYLR  CFAGDAMGMNMVSKG L VI+LL++ FPEMELVAISGN+C DKK AAINW+EGRGKS+V EA I    V  TLKTTV+
Sbjct:   24 ELAVLPDEELVRMVEAGAIKDHALEKKLGDFNRAVKVRRTLYERRMGNAGVFEKLPVDHFDYERIFGANCEIVVGYVPLPCGVVGPLLLDGEPVYVPMATTEGCLVASTNRGCKAITACGGARARVLKDGITRAPCILMPSAMAAADLKAWVEEPENFQAIQNAFNSTTSFGRLKSCTPTIAGRNVYLRCVCFAGDAMGMNMVSKGCLKVIELLEEHFPEMELVAISGNVCCDKKPAAINWIEGRGKSVVVEATITADVVRKTLKTTVE 292          
BLAST of mRNA_E-fasciculatus_F_contig10614.492.1 vs. uniprot
Match: A0A7S1CUQ8_9STRA (Hydroxymethylglutaryl-CoA reductase (NADPH) (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S1CUQ8_9STRA)

HSP 1 Score: 346 bits (888), Expect = 4.450e-111
Identity = 198/437 (45.31%), Postives = 263/437 (60.18%), Query Frame = 1
Query:   25 EPRPRWEVLRVLNYLVIGLFVCSITYVVFNYRTMSHAENGNGGLFPILVIWSVCMAYFFGFFGISFLDTSAMERSPSSFGLSHLDTHLYTSERKRAVQFAEPPAKGASNGTMCGKETPQLASSXXXXXXXXXXXXXXXXXXSAKSLKDKTAGTPPASLGPVPDGEDYSTMTDEEVAACVVTGKLKDHQLEKKLGDHARAVVVRRSLFERRI-----GRSMESLPVE-GYDYERIFGANCEIVCGYIPIPVGIVGPLTLNGQEVYVPMATTEGCLVASTXXXXXXXXXXXXXXAALLKDGITRAPCLRMPDAMAAADLKKWSEMPENFEAIKAAFQTTTRFGKLQGLMSTVAGRNVYLRFNCFAGDAMGMNMVSKGVLAVIDLLQKEFPEMELVAISGNMCTDKKSAAINWVEGRGKSIVCEARIPGKHVEATLKTTV 1317
            EP+P+W +LR+ NY+V   F+ S+     N  T     + +  L   L+IWS+ M YFFGFFGISF++   +E  P +     L   + T E       AEPP K         K  P  +S                    A    D T+   P+   P     +   +++ E+A+ V+  K+KDHQLEK L  H RAV VRR   + ++     G ++  LP +   DY+R+ GANCEIV GYIPIPVG+ GP+TLNG+ VY+PMATTEGCLVAST              +++L+DGITRAPC+R+P A  A+++  W E PENF+ +K  F++TT FGKL     TVAG+NVY+R  CFAGDAMGMNM+SKG LAVI+ L++ FP + LVA+SGNMCTDKK+AAINW+EGRGKS+V EA IP   V +TLKT+V
Sbjct:   82 EPQPKWHILRLTNYVVTFGFLLSVLKFASNATTYL---DDSTSLLQFLIIWSISMCYFFGFFGISFIELDELESEPQNHQHQMLRKPMPTKES------AEPPVKVV-------KMHPPASS--------------------APVCTDPTSFKKPSPSIPA----NIKELSNGEIASLVLQDKVKDHQLEKLLDPH-RAVEVRRLKVDNQLDSLGRGGALAELPHKHDLDYKRVLGANCEIVVGYIPIPVGMAGPITLNGESVYIPMATTEGCLVASTNRGCKAITQGSGAVSSILRDGITRAPCVRLPSAKEASEVFLWIERPENFQKLKEVFESTTSFGKLLEARPTVAGKNVYIRLRCFAGDAMGMNMISKGSLAVIECLRQVFPNISLVALSGNMCTDKKAAAINWIEGRGKSVVIEATIPKGVVRSTLKTSV 477          
BLAST of mRNA_E-fasciculatus_F_contig10614.492.1 vs. uniprot
Match: A0A7S4W3S1_9STRA (3-hydroxy-3-methylglutaryl coenzyme A reductase n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4W3S1_9STRA)

HSP 1 Score: 345 bits (885), Expect = 1.230e-109
Identity = 198/434 (45.62%), Postives = 252/434 (58.06%), Query Frame = 1
Query:   28 PRPRWEVLRVLNYLVIGLFVCSITYVVFNYRTMSHAENGNGGLFPILVIWSVCMAYFFGFFGISFLDTSAMERSPSSFGLSHLDTHLYTSERKRAVQFAEPPAKGASNGTMCGK-ETPQLASSXXXXXXXXXXXXXXXXXXSAKSLKDKTAGTPPASLGPVPDGEDYSTMTDEEVAACVVTGKLKDHQLEKKLGDHARAVVVRRSLFERRI-----GRSMESLPV-EGYDYERIFGANCEIVCGYIPIPVGIVGPLTLNGQEVYVPMATTEGCLVASTXXXXXXXXXXXXXXAALLKDGITRAPCLRMPDAMAAADLKKWSEMPENFEAIKAAFQTTTRFGKLQGLMSTVAGRNVYLRFNCFAGDAMGMNMVSKGVLAVIDLLQKEFPEMELVAISGNMCTDKKSAAINWVEGRGKSIVCEARIPGKHVEATLK 1308
            P P+W +L++LNY  +  F+ S+          S   N +  LF  L  WS  + YFFGFFGISF+D   +       G +   +   TS + +AV    PPA+     T+    E P L+ +                                          D  + ++EE++  V+TG++KDHQLEK L DH RAV VRR  F+ ++     G ++  LP     DY R+FGANCEIV GY+P+PVG+VGPLTLNG+ VY+PMATTEGCLVAST              + +L+DGITRAPC+RM  A  AA+LK W EMP NF  +K AF++TT FGKL  +  TVAG+NVYLR  CFAGDAMGMNMVSKG LAVID L+  FP + LVA+SGNMCTDKK+AA NW+ GRGKS+V EA IP   V  TLK
Sbjct:   78 PEPKWHILKILNYAAVSSFLVSVGCFA---SDASRHMNDSSSLFKFLFGWSFFLCYFFGFFGISFVDADEIME-----GQNFESSERSTSSKSKAVH---PPAESTPVCTVPSSFEKPSLSKT------------------------------------------DLQSKSNEELSNMVLTGQIKDHQLEKLL-DHHRAVDVRRLAFDSKLSSVGCGGALTDLPSGPSLDYSRVFGANCEIVVGYVPLPVGMVGPLTLNGRSVYIPMATTEGCLVASTNRGCKAITQGSGATSVILRDGITRAPCVRMNSAKEAAELKLWCEMPANFATLKHAFESTTGFGKLLSVEPTVAGKNVYLRLQCFAGDAMGMNMVSKGSLAVIDFLKSVFPTLVLVALSGNMCTDKKAAATNWIHGRGKSVVVEAIIPQHVVRTTLK 457          
BLAST of mRNA_E-fasciculatus_F_contig10614.492.1 vs. uniprot
Match: A0A1Z5KS57_FISSO (3-hydroxy-3-methylglutaryl coenzyme A reductase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KS57_FISSO)

HSP 1 Score: 341 bits (875), Expect = 3.750e-108
Identity = 199/436 (45.64%), Postives = 259/436 (59.40%), Query Frame = 1
Query:   28 PRPRWEVLRVLNYLVIGLFVCSITYVVFNYRTMSHAENGNGGLFPILVIWSVCMAYFFGFFGISFLDTSAMERSPSSFGLSHLDTHLYTSERKRAVQFAEPPAKGASNGTMCGKETPQLASSXXXXXXXXXXXXXXXXXXSAKSLKDKTAGTPPASLGPVPDGEDYSTMTDEEVAACVVTGKLKDHQLEKKLGDHARAVVVRRSLFERRIGR-----SMESLPVE-GYDYERIFGANCEIVCGYIPIPVGIVGPLTLNGQEVYVPMATTEGCLVASTXXXXXXXXXXXXXXAALLKDGITRAPCLRMPDAMAAADLKKWSEMPENFEAIKAAFQTTTRFGKLQGLMSTVAGRNVYLRFNCFAGDAMGMNMVSKGVLAVIDLLQKEFPEMELVAISGNMCTDKKSAAINWVEGRGKSIVCEARIPGKHVEATLKTTV 1317
            P P+W + R +N LV+  F CS+    F+    ++  N    L   L+ WS+ + YFFGFFG+ F+    +E S +      + T +  S +        PPA   S+  +C                            + +S ++K               ED     D E+A  V T ++KDH+LEK+L  H RAV VRR + E+++       ++E LP E   DY R+ GANCEIV GY+P+PVGI+GPLT+NG+  Y+PMATTEGCLVAST              A +++DGITRAPC+RMP AMAAA LK W E PENF  +KAAF++TT FGKL    +T+AG+NVYLR  CF+GDAMGMNMVSKG LAVI+ L+KEFPE+ LVA+SGNMCTDKK+AA NW+EGRGKS+V EA IP   V  TLKTTV
Sbjct:   65 PEPQWHLFRWINMLVVVAFACSVAE--FSLNATAYDSNV---LCQFLMAWSLLLCYFFGFFGVMFVHD--LEDSET------VSTPVTKSSK------IHPPA---SSTPICSD--------------------------AIQSKQNKLLII-----------EDIKDKKDAEIAQLVFTNQIKDHELEKQLDCH-RAVTVRRLVVEQKLASLGHSGALEGLPYETDLDYSRVHGANCEIVVGYVPLPVGIIGPLTINGESFYIPMATTEGCLVASTNRGAKAITEGGGALAQIVRDGITRAPCIRMPTAMAAAQLKLWCETPENFVQMKAAFESTTSFGKLHECKATIAGKNVYLRLVCFSGDAMGMNMVSKGTLAVIECLRKEFPELSLVALSGNMCTDKKAAATNWLEGRGKSVVVEATIPKDVVRKTLKTTV 440          
BLAST of mRNA_E-fasciculatus_F_contig10614.492.1 vs. uniprot
Match: A0A7S2I1A6_9STRA (3-hydroxy-3-methylglutaryl coenzyme A reductase n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2I1A6_9STRA)

HSP 1 Score: 334 bits (857), Expect = 1.610e-106
Identity = 196/412 (47.57%), Postives = 242/412 (58.74%), Query Frame = 1
Query:  103 VVFNYRTMSHAENGNGGLFPILVIWSVCMAYFFGFFGISFLDTSAMERSPSSFGLSHLDTHLYTSERKRAVQFAEPPAKGASNGTMCGKETPQLASSXXXXXXXXXXXXXXXXXXSAKSLKDKTAGTPPASLGPVPDGEDYSTMTDEEVAACVVTGKLKDHQLEKKLGDHARAVVVRRSLFERRI-----GRSMESLPV-EGYDYERIFGANCEIVCGYIPIPVGIVGPLTLNGQEVYVPMATTEGCLVASTXXXXXXXXXXXXXXAALLKDGITRAPCLRMPDAMAAADLKKWSEMPENFEAIKAAFQTTTRFGKLQGLMSTVAGRNVYLRFNCFAGDAMGMNMVSKGVLAVIDLLQKEFPEMELVAISGNMCTDKKSAAINWVEGRGKSIVCEARIPGKHVEATLKTTVK 1320
            V F     S   N +  LF  L  WSV + YFFGFFGISF+D                D  L T E      F++   + AS      K+  Q+  +                  +   LK+K                      DEE+A  V+ G++KDHQLEK L D  RAV VRR+ F+ ++     G +++ LP     DY R+FGANCEIV GY+PIPVG+VGPLTLNGQ VY+PMATTEGCLVAST              + +L+DGITRAPC+RM  A  AADLK W E P NF  +K AF++TT FGKL  +  TVAG+NVYLR  CFAGDAMGMNMVSKG LAVID L++ FP+++LVA+SGNMCTDKK+AA NW+ GRGKS+V EA IP   V +TLKTTV+
Sbjct:    7 VAFFASDASRHMNDSSSLFKFLFAWSVFLCYFFGFFGISFVDA---------------DDILATEE----PIFSQVQPESASRS----KKLKQVHPAAGSAPVCSVPSSFEKASVNKAELKEKA---------------------DEELARMVLAGQIKDHQLEKLL-DPRRAVDVRRAAFDSKLSTVGCGGALKDLPSGPSLDYSRVFGANCEIVVGYVPIPVGMVGPLTLNGQTVYIPMATTEGCLVASTNRGCKAITQGSGATSVILRDGITRAPCVRMSSAKQAADLKLWCEQPNNFATLKQAFESTTSFGKLLTVEPTVAGKNVYLRLQCFAGDAMGMNMVSKGSLAVIDHLKQVFPDLDLVALSGNMCTDKKAAATNWIHGRGKSVVIEATIPNHIVRSTLKTTVQ 373          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10614.492.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FUE1_ECTSI2.180e-27295.70Hydroxymethylglutaryl-CoA reductase (NADPH) n=1 Ta... [more]
A0A835YX65_9STRA3.150e-15553.853-hydroxy-3-methylglutaryl coenzyme A reductase n=... [more]
A0A7S3GVF0_9STRA5.020e-13451.023-hydroxy-3-methylglutaryl coenzyme A reductase n=... [more]
A0A6H5KHX7_9PHAE6.940e-13495.54Hydroxymethylglutaryl-CoA reductase (NADPH) n=1 Ta... [more]
A0A7S2EB74_TRICV1.180e-11147.003-hydroxy-3-methylglutaryl coenzyme A reductase (F... [more]
A0A7S1Y0Q7_9STRA4.000e-11164.313-hydroxy-3-methylglutaryl coenzyme A reductase n=... [more]
A0A7S1CUQ8_9STRA4.450e-11145.31Hydroxymethylglutaryl-CoA reductase (NADPH) (Fragm... [more]
A0A7S4W3S1_9STRA1.230e-10945.623-hydroxy-3-methylglutaryl coenzyme A reductase n=... [more]
A0A1Z5KS57_FISSO3.750e-10845.643-hydroxy-3-methylglutaryl coenzyme A reductase n=... [more]
A0A7S2I1A6_9STRA1.610e-10647.573-hydroxy-3-methylglutaryl coenzyme A reductase n=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10614contigE-fasciculatus_F_contig10614:350..4571 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score768.1
Seed ortholog evalue2.3e-219
Seed eggNOG ortholog2880.D7FUE1
Preferred nameHMGR
KEGG rclassRC00004,RC00644
KEGG koko:K00021
KEGG ReactionR02082
KEGG Pathwayko00900,ko01100,ko01110,ko01130,ko04152,ko04976,map00900,map01100,map01110,map01130,map04152,map04976
KEGG ModuleM00095
EggNOG free text desc.hydroxymethylglutaryl-CoA reductase (NADPH) activity
EggNOG OGsCOG1257@1,KOG2480@2759
EC1.1.1.34
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categorysignal anchor
Exons8
Model size1338
Cds size1338
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10614.492.1prot_E-fasciculatus_F_contig10614.492.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig10614 350..4571 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927560.349123-CDS-E-fasciculatus_F_contig10614:349..5251622927560.349123-CDS-E-fasciculatus_F_contig10614:349..525Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10614 350..525 +
1695995596.09576-CDS-E-fasciculatus_F_contig10614:349..5251695995596.09576-CDS-E-fasciculatus_F_contig10614:349..525Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10614 350..525 +
1622927560.4348707-CDS-E-fasciculatus_F_contig10614:1003..11671622927560.4348707-CDS-E-fasciculatus_F_contig10614:1003..1167Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10614 1004..1167 +
1695995596.1065917-CDS-E-fasciculatus_F_contig10614:1003..11671695995596.1065917-CDS-E-fasciculatus_F_contig10614:1003..1167Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10614 1004..1167 +
1622927560.448433-CDS-E-fasciculatus_F_contig10614:1592..17981622927560.448433-CDS-E-fasciculatus_F_contig10614:1592..1798Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10614 1593..1798 +
1695995596.1153193-CDS-E-fasciculatus_F_contig10614:1592..17981695995596.1153193-CDS-E-fasciculatus_F_contig10614:1592..1798Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10614 1593..1798 +
1622927560.4643672-CDS-E-fasciculatus_F_contig10614:2393..25341622927560.4643672-CDS-E-fasciculatus_F_contig10614:2393..2534Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10614 2394..2534 +
1695995596.1249547-CDS-E-fasciculatus_F_contig10614:2393..25341695995596.1249547-CDS-E-fasciculatus_F_contig10614:2393..2534Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10614 2394..2534 +
1622927560.4785888-CDS-E-fasciculatus_F_contig10614:2747..28791622927560.4785888-CDS-E-fasciculatus_F_contig10614:2747..2879Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10614 2748..2879 +
1695995596.1356134-CDS-E-fasciculatus_F_contig10614:2747..28791695995596.1356134-CDS-E-fasciculatus_F_contig10614:2747..2879Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10614 2748..2879 +
1622927560.488671-CDS-E-fasciculatus_F_contig10614:3116..33241622927560.488671-CDS-E-fasciculatus_F_contig10614:3116..3324Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10614 3117..3324 +
1695995596.1434076-CDS-E-fasciculatus_F_contig10614:3116..33241695995596.1434076-CDS-E-fasciculatus_F_contig10614:3116..3324Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10614 3117..3324 +
1622927560.502007-CDS-E-fasciculatus_F_contig10614:3870..40041622927560.502007-CDS-E-fasciculatus_F_contig10614:3870..4004Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10614 3871..4004 +
1695995596.1513464-CDS-E-fasciculatus_F_contig10614:3870..40041695995596.1513464-CDS-E-fasciculatus_F_contig10614:3870..4004Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10614 3871..4004 +
1622927560.5162506-CDS-E-fasciculatus_F_contig10614:4394..45711622927560.5162506-CDS-E-fasciculatus_F_contig10614:4394..4571Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10614 4395..4571 +
1695995596.1592584-CDS-E-fasciculatus_F_contig10614:4394..45711695995596.1592584-CDS-E-fasciculatus_F_contig10614:4394..4571Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10614 4395..4571 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig10614.492.1

>prot_E-fasciculatus_F_contig10614.492.1 ID=prot_E-fasciculatus_F_contig10614.492.1|Name=mRNA_E-fasciculatus_F_contig10614.492.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=446bp
RPVKQRPAEPRPRWEVLRVLNYLVIGLFVCSITYVVFNYRTMSHAENGNG
GLFPILVIWSVCMAYFFGFFGISFLDTSAMERSPSSFGLSHLDTHLYTSE
RKRAVQFAEPPAKGASNGTMCGKETPQLASSSSPPPVAEPASCSSNNGGS
AKSLKDKTAGTPPASLGPVPDGEDYSTMTDEEVAACVVTGKLKDHQLEKK
LGDHARAVVVRRSLFERRIGRSMESLPVEGYDYERIFGANCEIVCGYIPI
PVGIVGPLTLNGQEVYVPMATTEGCLVASTNRGCKAISQGGGCRAALLKD
GITRAPCLRMPDAMAAADLKKWSEMPENFEAIKAAFQTTTRFGKLQGLMS
TVAGRNVYLRFNCFAGDAMGMNMVSKGVLAVIDLLQKEFPEMELVAISGN
MCTDKKSAAINWVEGRGKSIVCEARIPGKHVEATLKTTVKVKAKG*
back to top

mRNA from alignment at E-fasciculatus_F_contig10614:350..4571+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig10614.492.1 ID=mRNA_E-fasciculatus_F_contig10614.492.1|Name=mRNA_E-fasciculatus_F_contig10614.492.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=4222bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10614:350..4571+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGGCCCGTCAAGCAACGCCCGGCGGAGCCGAGGCCCCGTTGGGAGGTGCT GCGGGTTCTCAACTACCTGGTGATCGGGCTGTTCGTGTGCTCCATCACGT ACGTGGTCTTCAACTATCGGACCATGAGCCACGCCGAGAACGGGAACGGT GGTCTCTTCCCGATCCTCGTCATCTGGTGAGGGATGCTGCCCCGTGCGAC AGATAGCACGTGATGCATTTTTAGTTGCTACGATCGAGTCCCTTCGTGCA CACACGAACAGTAGTGCTGTTTTTTATGTTGAAGACGGGCATGAGTGTTT TTGTTCGTGGTACATCGTTCGTGGTGTACTTGTGGTACGCACGCGGTATT GTAGGTTTGTCAACGTTCGGGAGCAGTGTGTTAAATGATCCTCAGGCCTG CGTCGGTGCTCATGTCTCATGCCACAAGAGGTCTCGATCTGCCCTGAAGT CTCGTACAGAGCCGGCCCCATACTCGCCCGATTGGAACACCAGATGGATG ATACCCTAGACACTTTGGGGCTACAAAGATCTTCTCATTCTGTATGTCGA CAAACGCACAGCAGTTTAGCGTCCGTGTGCGTGGACATGAGCCCCCTCAT GTTCATCTTCTCTCGCACACAACACTGCTGTCCACTTCTTCCGTTCTTGT GAAGGTCCGTGTGCATGGCGTACTTTTTCGGATTTTTCGGCATTTCTTTC CTGGACACGAGCGCGATGGAGAGAAGCCCCTCCTCGTTCGGCCTGTCCCA CCTCGACACCCACCTGTACACGTCCGAGCGCAAGAGAGCTGTGCAGTTCG CGGAGCCCCCTGCTAAAGGTAGATAAGACTTGATTGAGGATTGCGGAGTC CTCTGCTTAGCGTAGTGAGATGAGGAATCACGAGGGGTTGAAGTGCACAG CACTGGTAGGGTGAGAACAATGAGCGCCAGGCGTAGCCTTTCGGGTGGCG TGCACAGTTTTAGGGTGGTATGCGTAAAAGAGGGCGGAAAGAATCGAGGC TCACTTGTGTAGGTTTGGTCGGAGCAGGCATCGATTTGCCGCATCAGGCG ACTATGCATGGTGGTGCACATTTGTCGCCCCGGTTTACAGGCATGCTCGA TCTCCATTAGACATGGTTACGACACATGCCACGTCAATTCTCTTCACGCT TGTTTTCACAGCAGCAAGACTAAGATTCCGTCTTTTTTTTGTTCGCCCTG TCACTTGTGTTGTACACTCCCTCTGTTCGCGTCCGTTCGTCAGGTGCTTC GAACGGCACCATGTGTGGGAAGGAGACGCCGCAACTGGCCTCTTCTTCCT CACCGCCGCCGGTGGCGGAGCCTGCCTCGTGCAGCAGCAACAACGGCGGT AGCGCGAAATCGCTCAAGGATAAGACCGCTGGTACGCCGCCGGCCTCCCT CGGGCCCGTCCCTGATGGAGAGGACTACTCCACCATGACCGACGAGGAGG TATGTTACATATCATATCGTATCATATCATACATATCATATCGTATCATA TCATACATATCATATCACATCATATAATATGAATACCGTCGATGCCGTTG GTTACTAGTCCTTGGGGTCAACGTAAAGTGCGGGAATTGCAGACACATGG TCGGTCAGTTTTTTCTACAAAGGATTGCCGGGCAACAAGAGGGTGCTATC GACATGCGACCTACATGTGCAAGGAAAAAATCCCTCGACGAGATGTTTCC GAAACCATCCTCTTCGGCATCGATCAGCAGCCAGATAAGTATTAACTGTG GAATAAGATCGACGTTTCAAAGTGGACCGATCGCACATCATTTGATCGAG GCTCTGCGACCGCCTCGATAACATGCAGCGGTGAGACCAAAGTCTCAGGA ACAATTCGAGTCATGGTTGCAGAATGAGAACGATACTGCTGGATATTCTC CGTTTTAGGTCTTGCGCATGTTTCATAGTCTTGTAGCTGTCAGGCACCAC AAGTTGCTCAACGTGTACGGCGATGGGTGTGTGGATGTGTCCTTTCCTTC ACGTGCGTTCCTTTTTTCTTCGTTTCTCTCCCTGTGTTGAGTAGGTGGCT GCGTGCGTGGTGACGGGCAAGCTGAAGGACCACCAGCTGGAGAAGAAGCT CGGCGATCACGCCCGTGCGGTCGTCGTGCGCCGCAGCCTGTTTGAGAGGC GCATCGGCCGTTCCATGGAAAGCCTCCCCGTCGAGGTGCGTGCGCGTTGC GTTTTTCCAAGCACACGGGAAGTTAGAAAGTTAGTTGTGTTGCGTTGTGT TGTGTGGTCGTGGACCGAAGAACACGCACAAATTGCTCCAGAACAAGTGT TTTGTTACTGCGAGCAGATAGAGGACAAGACACCCAAACCCCCCGTCTGG TTATGCACACGAACTTCCCTTGGCTGTATTGTATTCTGTCTGTCTCAGGG CTACGACTACGAGCGCATCTTCGGCGCCAACTGCGAAATCGTGTGCGGGT ACATCCCCATCCCCGTGGGCATCGTGGGACCCCTCACGCTCAACGGGCAG GAGGTGTACGTGCCGATGGCCACCACCGAGGTGAGCTATTATAGCTTTAT TACAGCTATTGGCCCGTCTAGGCCAAGTAACCAGTGACAAGGGTCCGAGG GTCTGGTTGCGAGCACCAGGGGAGATATTTTTGCGGAGAAATCACACCCC GCTGGTGTGATGTGTGGTTGTTCGTATGTGGTACGCTGGCAGCGGGGAGA TAGACTTCGCCGGGAAATAAATTAAACACGCCGCTGCTGTGTGTTTCGTT GGGTTGTACGCCGGCAGGGGTGCCTCGTTGCCAGCACCAACCGCGGCTGC AAGGCTATCTCCCAGGGAGGCGGGTGCCGCGCAGCGCTTCTGAAGGACGG TATCACGCGGGCACCGTGCCTGCGGATGCCCGACGCGATGGCCGCGGCGG ACCTTAAGAAGTGGTCGGAGATGCCGGAGAACTTCGAGGCCATCAAGGCC GCCTTCCAGACTACCACTCGGTTCGGTGAGATGGCTTGTGAACGTTGTTG TTGTGGTCGGTATTTGTTTTGGTGTTGGTGTTGCTGGTGGTGGTGTTGTT GGTGACGTGTTATATTTGTTCTTCTATTGCATCTATTGTAATTGTTGTGG TTGCGGTCGATATTTCTCGTGATTTTGCTGCTGCTATTGCTGTTGTGGTT GACATTGCGTTTGACGACGTTGTTCTGCTTACACGTAGACTCGTTCTGAC TCTCTAAGGCACCTCATTTGGGCACCAACCAAGAGTTGAGAAACCTGGTG AGGTTGCGATCAAATAGTCTGTACTCCTGTTCCCGTTGACACACCCACTC CCGTTCAGGCTTCGCCAAAAATACGGCCTGTAGGGAAGCACGCTCGCTAG CAACCTCGTTGCATTTGTTTGTGTGAGGCGCGTTTGTCCTATGTCCTGAG AAAACCTGCAGGGTTGTTTGTGCTTTGGTTCTCTCGTTTGGCATTTTGAA CCCAAGACATGGTGATTACATCAGCGGCGGCGCGTTTTTGTTTACGTTTG CGTTTTTTTTCTTGTGTGTAGGCAAGCTGCAGGGGCTCATGTCCACCGTG GCTGGGCGCAACGTGTACCTTCGGTTCAACTGCTTCGCCGGAGACGCTAT GGGGATGAACATGGTCTCCAAGGGGGTTCTGGCTGTCATCGACCTCTTGC AGAAGGTGACAAGTGGTTGGTTGTCGTAGCATCTAATAGCCGTTGACAAA AGTTGATACCGATGGTAAAGGTGATGACTGCATGGCCGTGGAATGGCATG TTTCGTCCGACCCATCGCTCAACAGCAATGCGGGCACTTGCGTTAAAGTC AAAACAGCCCTCTAGCGGTGCAGTAGTAGAGCCTTCGAGTCATCGTACGT GTCGAGCAGGCTTTTTTCGGGCAGCACGACCAAGCCCCTAGGTCCGAGGA TGAACGCGCAGATTGGCCGATCTCTACCTGTTGCGACAAGAGATATAACA GAGCTCTCTCGCTCACTCTCGGCCTCCCTGTCTCTCTCTGTCTCTGCCTC TCGATCGGCCTCTCTCGTCAAAACTGTCGCATTGTGCGTGCTCAGGAATT CCCTGAGATGGAGCTGGTGGCGATTTCTGGCAACATGTGCACGGACAAGA AGTCGGCCGCGATCAACTGGGTAGAAGGCCGCGGAAAGTCGATTGTTTGC GAGGCGCGTATCCCGGGGAAGCACGTGGAGGCCACCCTCAAGACCACCGT GAAGGTGAAGGCTAAAGGCTAA
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10614:350..4571+

>mRNA_E-fasciculatus_F_contig10614.492.1 ID=mRNA_E-fasciculatus_F_contig10614.492.1|Name=mRNA_E-fasciculatus_F_contig10614.492.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2676bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10614:350..4571+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGGCCCGTCAAGCAACGCCCGGCGGAGCCGAGGCCCCGTTGGGAGGTGCT
GCGGGTTCTCAACTACCTGGTGATCGGGCTGTTCGTGTGCTCCATCACGT
ACGTGGTCTTCAACTATCGGACCATGAGCCACGCCGAGAACGGGAACGGT
GGTCTCTTCCCGATCCTCGTCATCTGAGGCCCGTCAAGCAACGCCCGGCG
GAGCCGAGGCCCCGTTGGGAGGTGCTGCGGGTTCTCAACTACCTGGTGAT
CGGGCTGTTCGTGTGCTCCATCACGTACGTGGTCTTCAACTATCGGACCA
TGAGCCACGCCGAGAACGGGAACGGTGGTCTCTTCCCGATCCTCGTCATC
TGGTCCGTGTGCATGGCGTACTTTTTCGGATTTTTCGGCATTTCTTTCCT
GGACACGAGCGCGATGGAGAGAAGCCCCTCCTCGTTCGGCCTGTCCCACC
TCGACACCCACCTGTACACGTCCGAGCGCAAGAGAGCTGTGCAGTTCGCG
GAGCCCCCTGCTAAAGGTCCGTGTGCATGGCGTACTTTTTCGGATTTTTC
GGCATTTCTTTCCTGGACACGAGCGCGATGGAGAGAAGCCCCTCCTCGTT
CGGCCTGTCCCACCTCGACACCCACCTGTACACGTCCGAGCGCAAGAGAG
CTGTGCAGTTCGCGGAGCCCCCTGCTAAAGGTGCTTCGAACGGCACCATG
TGTGGGAAGGAGACGCCGCAACTGGCCTCTTCTTCCTCACCGCCGCCGGT
GGCGGAGCCTGCCTCGTGCAGCAGCAACAACGGCGGTAGCGCGAAATCGC
TCAAGGATAAGACCGCTGGTACGCCGCCGGCCTCCCTCGGGCCCGTCCCT
GATGGAGAGGACTACTCCACCATGACCGACGAGGAGGTGCTTCGAACGGC
ACCATGTGTGGGAAGGAGACGCCGCAACTGGCCTCTTCTTCCTCACCGCC
GCCGGTGGCGGAGCCTGCCTCGTGCAGCAGCAACAACGGCGGTAGCGCGA
AATCGCTCAAGGATAAGACCGCTGGTACGCCGCCGGCCTCCCTCGGGCCC
GTCCCTGATGGAGAGGACTACTCCACCATGACCGACGAGGAGGTGGCTGC
GTGCGTGGTGACGGGCAAGCTGAAGGACCACCAGCTGGAGAAGAAGCTCG
GCGATCACGCCCGTGCGGTCGTCGTGCGCCGCAGCCTGTTTGAGAGGCGC
ATCGGCCGTTCCATGGAAAGCCTCCCCGTCGAGGTGGCTGCGTGCGTGGT
GACGGGCAAGCTGAAGGACCACCAGCTGGAGAAGAAGCTCGGCGATCACG
CCCGTGCGGTCGTCGTGCGCCGCAGCCTGTTTGAGAGGCGCATCGGCCGT
TCCATGGAAAGCCTCCCCGTCGAGGGCTACGACTACGAGCGCATCTTCGG
CGCCAACTGCGAAATCGTGTGCGGGTACATCCCCATCCCCGTGGGCATCG
TGGGACCCCTCACGCTCAACGGGCAGGAGGTGTACGTGCCGATGGCCACC
ACCGAGGGCTACGACTACGAGCGCATCTTCGGCGCCAACTGCGAAATCGT
GTGCGGGTACATCCCCATCCCCGTGGGCATCGTGGGACCCCTCACGCTCA
ACGGGCAGGAGGTGTACGTGCCGATGGCCACCACCGAGGGGTGCCTCGTT
GCCAGCACCAACCGCGGCTGCAAGGCTATCTCCCAGGGAGGCGGGTGCCG
CGCAGCGCTTCTGAAGGACGGTATCACGCGGGCACCGTGCCTGCGGATGC
CCGACGCGATGGCCGCGGCGGACCTTAAGAAGTGGTCGGAGATGCCGGAG
AACTTCGAGGCCATCAAGGCCGCCTTCCAGACTACCACTCGGTTCGGGGT
GCCTCGTTGCCAGCACCAACCGCGGCTGCAAGGCTATCTCCCAGGGAGGC
GGGTGCCGCGCAGCGCTTCTGAAGGACGGTATCACGCGGGCACCGTGCCT
GCGGATGCCCGACGCGATGGCCGCGGCGGACCTTAAGAAGTGGTCGGAGA
TGCCGGAGAACTTCGAGGCCATCAAGGCCGCCTTCCAGACTACCACTCGG
TTCGGCAAGCTGCAGGGGCTCATGTCCACCGTGGCTGGGCGCAACGTGTA
CCTTCGGTTCAACTGCTTCGCCGGAGACGCTATGGGGATGAACATGGTCT
CCAAGGGGGTTCTGGCTGTCATCGACCTCTTGCAGAAGGCAAGCTGCAGG
GGCTCATGTCCACCGTGGCTGGGCGCAACGTGTACCTTCGGTTCAACTGC
TTCGCCGGAGACGCTATGGGGATGAACATGGTCTCCAAGGGGGTTCTGGC
TGTCATCGACCTCTTGCAGAAGGAATTCCCTGAGATGGAGCTGGTGGCGA
TTTCTGGCAACATGTGCACGGACAAGAAGTCGGCCGCGATCAACTGGGTA
GAAGGCCGCGGAAAGTCGATTGTTTGCGAGGCGCGTATCCCGGGGAAGCA
CGTGGAGGCCACCCTCAAGACCACCGTGAAGGTGAAGGCTAAAGGCTAAG
AATTCCCTGAGATGGAGCTGGTGGCGATTTCTGGCAACATGTGCACGGAC
AAGAAGTCGGCCGCGATCAACTGGGTAGAAGGCCGCGGAAAGTCGATTGT
TTGCGAGGCGCGTATCCCGGGGAAGCACGTGGAGGCCACCCTCAAGACCA
CCGTGAAGGTGAAGGCTAAAGGCTAA
back to top