mRNA_E-fasciculatus_F_contig10603.482.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig10603.482.1 vs. uniprot
Match: A0A6H5KRA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRA3_9PHAE) HSP 1 Score: 576 bits (1485), Expect = 5.450e-199 Identity = 353/523 (67.50%), Postives = 366/523 (69.98%), Query Frame = 1
Query: 1 MDGVSSASPGRAVGKTADRLVKVEQPTAVPRSSSSSSSGRSADHGVSSMAEAVAAELAAAENGGTGGGQGAVSDEHLYQDPASLKWKIFEAVAKANGQRAFETYWSALRDFMHGWLSRGGLDEALDASLGKDNLHLHNELILCLLNNARCRYLPADLVSQVPASFRGKVVHAPAAQAPAVRPTTAAATAAIPRRLVP-----MPNGRSSGNSPGGKSGLSNGXXXXXXXXXXASLSFQGKRAEGLLLNAEGYVAAAAGRGSPAGGSSLSAVPLKAEFGSGEKPVTQAPGVAKLEA-AAXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRIPRGERGGVDRFGEAELLSRDAQVLEDEIESSFGSGSDLWHPWSSRKEWSSGRLGRSSSSSRGVKRPAPLSQETDSTGCCANDRDTKSLKTEGGVAVAVAGGGGSAANGALHCPGDEVPRLCTLVSPPAPASLKGATPALEQAAARAAAEQLSPSHRSQRVPGARALAPFLQAVTASQKMKVSHEVCRVMTAGVK 1551
MDGV+S SPG +GK +DRLVKVEQPT VPRSS++ G SADHGVS MAEAVAAELAAAE GGTGGGQ AV+DEHLYQDP SLKWKIFEAVAKANGQRAFETYWSALRDFMHGWLSRGGLDEALDASLG DNLHLHNELILCLLNNARCRYLPADLVSQVPASFRGKVVH A + P G SGLSN ASL FQGKRAEGLLLNAEGY G SLSA PLK E+GS EKP TQAPGVAKLEA AA DRIPRGERGGVD EAELLSRDAQ+LEDEIE+SFG+GSDLWHPWSSR+EW SGRL RSSS RGVKRPAPLSQETDSTGC AN+RD K LKTE VA AANGALHC GA PALEQA ARAAAEQLSPSHRSQRVPGARALAPFLQAVTASQKMKVSHEVCRVMTAGVK
Sbjct: 1 MDGVNSPSPGIIIGKNSDRLVKVEQPT-VPRSSNT---GSSADHGVS-MAEAVAAELAAAETGGTGGGQNAVTDEHLYQDPGSLKWKIFEAVAKANGQRAFETYWSALRDFMHGWLSRGGLDEALDASLGADNLHLHNELILCLLNNARCRYLPADLVSQVPASFRGKVVHTTAXXXXXXXXXXXXXXXXXXXXXXXXXXPVLXXXXXXXXPPCGNSGLSNAAAA-------ASLPFQGKRAEGLLLNAEGYAV---------DGGSLSAAPLKTEYGSVEKPATQAPGVAKLEATAARSGLTAAVTPSAGDDAVSSPEGERRRDDDRIPRGERGGVDCLVEAELLSRDAQLLEDEIEASFGTGSDLWHPWSSREEWGSGRLERSSS--RGVKRPAPLSQETDSTGCYANERDAKYLKTESEVAAXXXXXXXXAANGALHC--------------------AGAAPALEQAPARAAAEQLSPSHRSQRVPGARALAPFLQAVTASQKMKVSHEVCRVMTAGVK 480
BLAST of mRNA_E-fasciculatus_F_contig10603.482.1 vs. uniprot
Match: D8LER5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LER5_ECTSI) HSP 1 Score: 570 bits (1470), Expect = 1.170e-196 Identity = 349/480 (72.71%), Postives = 363/480 (75.62%), Query Frame = 1
Query: 145 MAEAVAAELAAAENGGTGGGQGAVSDEHLYQDPASLKWKIFEAVAKANGQRAFETYWSALRDFMHGWLSRGGLDEALDASLGKDNLHLHNELILCLLNNARCRYLPADLVSQVPASFRGKVVHAPAAQAPAVRPTTAAATA-----AIPRRLVPMPNGRSSGNSPGGKSGLSNGXXXXXXXXXX-----ASLSFQGKRAEGLLLNAEGYVAAAAGRGSPAGGSSLSAVPLKAEFGSGEKPVTQAPGVAKLEA-AAXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRIPRGERGGVDRFGEAELLSRDAQVLEDEIESSFGSGSDLWHPWSSRKEWSSGRLGRSSSSSRGVKRPAPLSQETDSTGCCANDRDTKSLKTEGGVAVAVAGGGGSAANGALHCPGDEVPRLCTLVSPPAPASLKGATPALEQAAARAAAEQLSPSHRSQRVPGARALAPFLQAVTASQKMKVSHEVCRVMTAGVK 1551
MAEAVAAELAAAE GGTGGGQ AV+DEHLYQDPASLKWKIFEAVAKANGQRAFETYWSALRDFMHGWL RGGLDEALDASLG DNLHLHNELILCLLNNARCRYLPADLVSQVPASFRGKVVH AIPRR VP+ NG +SG+SP GKSGLSNG XXXXXXXXX ASL FQGKRAEGLLLNAEGY GS LSA P+K EFGSG KP TQAPGVAKLE AA DRIPRGERGGVD EAELLSRDAQ+LEDEIE+SFG+GSDLWHPWSSR+EW SGRL RSSS +GVKRPAPLSQET+STGC AN+RDTKSLKTEGGVA SAANGAL+CP PR T +KGA PALEQAAARAAAEQLSPSHRSQRVPGARALAPFLQAVTASQKMKVSHEVCRVMTAGVK
Sbjct: 1 MAEAVAAELAAAETGGTGGGQNAVTDEHLYQDPASLKWKIFEAVAKANGQRAFETYWSALRDFMHGWLPRGGLDEALDASLGADNLHLHNELILCLLNNARCRYLPADLVSQVPASFRGKVVHTTXXXXXXXXXXXXXXXXXXXXXAIPRRPVPVLNGSNSGSSPCGKSGLSNGSXXXXXXXXXXXXXXASLPFQGKRAEGLLLNAEGYAV---------DGSGLSAAPVKTEFGSGAKPATQAPGVAKLETTAARSGLTSAVAPSAGDDAVSSPGGERRRDDDRIPRGERGGVDCLVEAELLSRDAQLLEDEIEASFGTGSDLWHPWSSREEWGSGRLERSSS--QGVKRPAPLSQETNSTGCYANERDTKSLKTEGGVAAXXXXX--SAANGALYCP---EPRSTTR-------EMKGAAPALEQAAARAAAEQLSPSHRSQRVPGARALAPFLQAVTASQKMKVSHEVCRVMTAGVK 457 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10603.482.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig10603.482.1 >prot_E-fasciculatus_F_contig10603.482.1 ID=prot_E-fasciculatus_F_contig10603.482.1|Name=mRNA_E-fasciculatus_F_contig10603.482.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=517bp MDGVSSASPGRAVGKTADRLVKVEQPTAVPRSSSSSSSGRSADHGVSSMAback to top mRNA from alignment at E-fasciculatus_F_contig10603:1626..4547+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig10603.482.1 ID=mRNA_E-fasciculatus_F_contig10603.482.1|Name=mRNA_E-fasciculatus_F_contig10603.482.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2922bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10603:1626..4547+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10603:1626..4547+ >mRNA_E-fasciculatus_F_contig10603.482.1 ID=mRNA_E-fasciculatus_F_contig10603.482.1|Name=mRNA_E-fasciculatus_F_contig10603.482.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=3102bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10603:1626..4547+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |