mRNA_E-fasciculatus_F_contig106.476.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig106.476.1 vs. uniprot
Match: A0A6H5KN60_9PHAE (PseudoU_synth_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN60_9PHAE) HSP 1 Score: 615 bits (1587), Expect = 5.970e-219 Identity = 310/330 (93.94%), Postives = 314/330 (95.15%), Query Frame = 3
Query: 93 MPRRALPACVLSSSPSRLRCLAVLTAAWGSHGFRSISSGNGGTRVRAAT--AATNEVGEVQVEERPWLGNGPDPMASTGKARPGTSASLGAAAVGEAGGKGKGVAPEEMWLNGPFNAPVPPGPLEVLFVDDEIVVCNKPSDLLCVPGRIEKDSLATRAALELGHYRVDRMIVHRLDMATSGCVIMARTDAALKDLNRQFRERQVRKRYVAMVHGVLSADEGEVDLPLCRNRGCPPLHMVNFEHGKPSLTKWRVLDRAADRTRVELIPVSGRSHQLRLHMNAIGHPILGDHFYGTKDSLALADRCLLHAHTLCLRHPKTGERTMFTAPCEF 1076
MPRRA PA VLSSSP RLRCL VLTAAWGSHGFRSISS NGGTRV AT AATNEV EVQVEERPWLGNGPDPMASTGK RPGTSASLGAA VGE GGKGKGVA EEMWLNGPFNAPVPPGPL++LFVD+EIVVCNKPSDLLCVPGRIEKDSLATRAALELGHYRVDRMIVHRLDMATSGCVIMARTDAALKDLNRQFRERQVRKRYVAMVHGVL ADEGEVDLPLCRNRGCPPLHMVNFEHGKPSLTKWRVL+RAADRTRVELIPVSGRSHQLRLHMNAIGHPILGDHFYGTKDSL LADRCLLHAHTLCLRHPKTGERTMFTAPCEF
Sbjct: 1 MPRRAQPAGVLSSSPGRLRCLTVLTAAWGSHGFRSISSCNGGTRVHVATTAAATNEVREVQVEERPWLGNGPDPMASTGKIRPGTSASLGAAVVGEPGGKGKGVAAEEMWLNGPFNAPVPPGPLDILFVDEEIVVCNKPSDLLCVPGRIEKDSLATRAALELGHYRVDRMIVHRLDMATSGCVIMARTDAALKDLNRQFRERQVRKRYVAMVHGVLWADEGEVDLPLCRNRGCPPLHMVNFEHGKPSLTKWRVLERAADRTRVELIPVSGRSHQLRLHMNAIGHPILGDHFYGTKDSLDLADRCLLHAHTLCLRHPKTGERTMFTAPCEF 330
BLAST of mRNA_E-fasciculatus_F_contig106.476.1 vs. uniprot
Match: D8LR37_ECTSI (Pseudouridylate synthases, 23S RNA-specific n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR37_ECTSI) HSP 1 Score: 498 bits (1281), Expect = 1.290e-173 Identity = 246/256 (96.09%), Postives = 250/256 (97.66%), Query Frame = 3
Query: 309 MASTGKARPGTSASLGAAAVGEAGGKGKGVAPEEMWLNGPFNAPVPPGPLEVLFVDDEIVVCNKPSDLLCVPGRIEKDSLATRAALELGHYRVDRMIVHRLDMATSGCVIMARTDAALKDLNRQFRERQVRKRYVAMVHGVLSADEGEVDLPLCRNRGCPPLHMVNFEHGKPSLTKWRVLDRAADRTRVELIPVSGRSHQLRLHMNAIGHPILGDHFYGTKDSLALADRCLLHAHTLCLRHPKTGERTMFTAPCEF 1076
MASTG+ RPGTSASLGAA VGEAGGKGKGVA EEMWLNGPFNAPVPPGPLE+LFVD+EIVVCNKPSDLLCVPGRIEKDSLATRAALELGHYRVDRMIVHRLDMATSGCVIMARTDAALKDLNRQFRERQVRKRYVA+VHGVL ADEGEVDLPLCRNRGCPPLHMVNFEHGKPSLTKWRVLDRAADRTRVELIPVSGRSHQLRLHMNAIGHPILGDHFYGT DSLALA RCLLHAHTLCLRHPKTGERTMFTAPCEF
Sbjct: 1 MASTGQVRPGTSASLGAAVVGEAGGKGKGVAAEEMWLNGPFNAPVPPGPLEILFVDEEIVVCNKPSDLLCVPGRIEKDSLATRAALELGHYRVDRMIVHRLDMATSGCVIMARTDAALKDLNRQFRERQVRKRYVAIVHGVLWADEGEVDLPLCRNRGCPPLHMVNFEHGKPSLTKWRVLDRAADRTRVELIPVSGRSHQLRLHMNAIGHPILGDHFYGTTDSLALAGRCLLHAHTLCLRHPKTGERTMFTAPCEF 256
BLAST of mRNA_E-fasciculatus_F_contig106.476.1 vs. uniprot
Match: A0A836CD05_9STRA (Pseudouridylate synthase, 23S RNA-specific n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CD05_9STRA) HSP 1 Score: 225 bits (574), Expect = 2.300e-67 Identity = 119/232 (51.29%), Postives = 150/232 (64.66%), Query Frame = 3
Query: 396 VAPEEMWLNGPFNAPVPPGPLEVLFVDDEIVVCNKPSDLLCVPGRIEKDSLATRAALELGHYRVDRMIVHRLDMATSGCVIMARTDAALKDLNRQFRERQVRKRYVAMVHGVLSADEGEVDLPLCRNRGCPPLHMVNFEHGKPSLTKWRVLDR-----AADRTRVELIPVSGRSHQLRLHMNAIGHPILGDHFYGTKDSLALADRCLLHAHTLCLRHPKTGERTMFTAPCEF 1076
++PEE W+ GP++V++ DD I+VCNKPS LL VPG KD L +R A++ G R+D+M+VHRLD ATSG V+ ARTD AL+ L+ FR R+V K Y A+V+G ++ D GEV P+ ++ PPL +++ GKP T W VL R AD TRV L PV+GRSHQLRLHM +GHPILGD Y + ALA RCLLHA TL RHP TGE F P EF
Sbjct: 3 LSPEERWMR-------VAGPVDVVYSDDHIIVCNKPSGLLSVPGITLKDCLVSRVAVKFGQARIDKMVVHRLDQATSGLVLFARTDEALRALHEDFRLRRVSKCYEAVVYGSVAGDSGEVTEPMRKDMDNPPLQLIDHVQGKPCQTLWSVLSRETRGGGADATRVALTPVTGRSHQLRLHMQVLGHPILGDDLYAHAAARALAPRCLLHARTLRFRHPATGEDLSFEVPPEF 227
BLAST of mRNA_E-fasciculatus_F_contig106.476.1 vs. uniprot
Match: A0A369WRJ6_9GAMM (Pseudouridine synthase n=1 Tax=Motiliproteus coralliicola TaxID=2283196 RepID=A0A369WRJ6_9GAMM) HSP 1 Score: 206 bits (525), Expect = 2.190e-60 Identity = 110/209 (52.63%), Postives = 145/209 (69.38%), Query Frame = 3
Query: 456 LEVLFVDDEIVVCNKPSDLLCVPGR--IEKDSLATRAALELGHYRVDRMIVHRLDMATSGCVIMARTDAALKDLNRQFRERQVRKRYVAMVHGVLSADEGEVDLPLCRNRGCPPLHMVNFEHGKPSLTKWRVLDRAADRTRVELIPVSGRSHQLRLHMNAIGHPILGDHFYGTKDSLALADRCLLHAHTLCLRHPKTGERTMFTAPCEF 1076
+EVL+ DD +V+ KP+DLL VPGR +D L R E R IVHRLD ATSG +++A + ++L+RQF +R+ RKRY+A+V G L +G V+LPL + P MV+ + GKP+LT++R+LD+A DR+RVELIP++GRSHQLR+HM A+GHPILGD FY T +LA ADR LHA L +RHP +GER FTAPC F
Sbjct: 2 IEVLYQDDSLVIAVKPADLLSVPGRGPENQDCLLHRLQSEFPTAR----IVHRLDCATSGVMVLALDADSHRELSRQFHDRETRKRYIAVVDGTLKQHQGRVELPLRCDWPNRPKQMVDHDQGKPALTEYRLLDQADDRSRVELIPITGRSHQLRVHMQALGHPILGDRFYATPSALAKADRLNLHAEQLGIRHPVSGERMEFTAPCPF 206
BLAST of mRNA_E-fasciculatus_F_contig106.476.1 vs. uniprot
Match: A0A291HLR0_9GAMM (Pseudouridine synthase n=4 Tax=Zobellella denitrificans TaxID=347534 RepID=A0A291HLR0_9GAMM) HSP 1 Score: 206 bits (523), Expect = 7.450e-60 Identity = 111/218 (50.92%), Postives = 146/218 (66.97%), Query Frame = 3
Query: 429 FNAPVPPGPLEVLFVDDEIVVCNKPSDLLCVPGR--IEKDSLATRAALELGHYRVDRMIVHRLDMATSGCVIMARTDAALKDLNRQFRERQVRKRYVAMVHGVLSADEGEVDLPLCRNRGCPPLHMVNFEHGKPSLTKWRVLDRAADRTRVELIPVSGRSHQLRLHMNAIGHPILGDHFYGTKDSLALADRCLLHAHTLCLRHPKTGERTMFTAPCEF 1076
++ P+ P EVL+ D+ ++V NKPS LL VPGR I +DSL+ R A +V VHRLDMATSG ++MA A ++L+RQFRER+ KRY A VHG L D G +DLPLC + P HMV+ EHGKP+LT WR L R DR+ VEL P++GRSHQLR+HM ++GHPILGD+ Y + ++LA+A LHA L RHP++ + F+AP F
Sbjct: 6 YDPPMDPQ-FEVLYQDNSLIVLNKPSGLLSVPGRELIHRDSLSYRVARVYPGVQV----VHRLDMATSGVIVMALHPKAHRELSRQFRERETAKRYYAWVHGRLEQDAGSIDLPLCCDWPNRPRHMVSLEHGKPALTHWRCLRREPDRSLVELTPITGRSHQLRVHMLSLGHPILGDNLYASGEALAMAPHLQLHAAWLAFRHPRSKQWLEFSAPAPF 218
BLAST of mRNA_E-fasciculatus_F_contig106.476.1 vs. uniprot
Match: UPI000371F359 (RluA family pseudouridine synthase n=1 Tax=Kordiimonas gwangyangensis TaxID=288022 RepID=UPI000371F359) HSP 1 Score: 204 bits (520), Expect = 1.880e-59 Identity = 109/210 (51.90%), Postives = 144/210 (68.57%), Query Frame = 3
Query: 453 PLEVLFVDDEIVVCNKPSDLLCVPGRIEK--DSLATRAALELGHYRVDRMIVHRLDMATSGCVIMARTDAALKDLNRQFRERQVRKRYVAMVHGVLSADEGEVDLPLCRNRGCPPLHMVNFEHGKPSLTKWRVLDRAADRTRVELIPVSGRSHQLRLHMNAIGHPILGDHFYGTKDSLALADRCLLHAHTLCLRHPKTGERTMFTAPCEF 1076
PL+++ VDD+I+V NKP+ LL VPGR E+ D LATRA E R IVHRLDM TSG +IMAR AL+ L RQF +R+ K Y A+++G L+ DEGEVDLPL + P H V+FE+GKP+ T+++V++R TRV L PV+GRSHQLR+HM ++GH I+GD+ Y ++ LADR LHA L + HP++GE FTAP F
Sbjct: 15 PLDIIHVDDDILVLNKPNGLLSVPGRTEEKFDCLATRAEAEFTGVR----IVHRLDMETSGVIIMARHMDALRHLGRQFEDRKTDKVYEALIYGNLARDEGEVDLPLLVDWPNRPKHRVDFENGKPAFTRYKVIERTEKTTRVALYPVTGRSHQLRVHMLSLGHAIIGDNLYAEGEAFTLADRLCLHARELTVTHPESGESLTFTAPVPF 220
BLAST of mRNA_E-fasciculatus_F_contig106.476.1 vs. uniprot
Match: A0A371RL31_9PROT (RNA pseudouridine synthase n=1 Tax=Parvularcula marina TaxID=2292771 RepID=A0A371RL31_9PROT) HSP 1 Score: 201 bits (512), Expect = 2.610e-58 Identity = 102/207 (49.28%), Postives = 136/207 (65.70%), Query Frame = 3
Query: 456 LEVLFVDDEIVVCNKPSDLLCVPGRIEKDSLATRAALELGHYRVDRMIVHRLDMATSGCVIMARTDAALKDLNRQFRERQVRKRYVAMVHGVLSADEGEVDLPLCRNRGCPPLHMVNFEHGKPSLTKWRVLDRAADRTRVELIPVSGRSHQLRLHMNAIGHPILGDHFYGTKDSLALADRCLLHAHTLCLRHPKTGERTMFTAPCEF 1076
L+VL+ DD ++V NK + LL VPG + +DSL TRAA G+ ++ HRLDMATSG ++M R L + QF +RQ KRY+A+V G ++ D+G VDLP+ + PL M+ E G+P++T W VL R D+TR+ L P++GRSHQLRLHM +GHPILGD +Y ++ A + R LLHA L L HP GER FTAPC F
Sbjct: 15 LDVLYGDDALIVLNKQAGLLSVPGNVSRDSLETRAAERFGN----TLVAHRLDMATSGVIVMPRGKENLAAVGLQFEKRQTEKRYIAVVWGDVAEDKGTVDLPIRCDWPNRPLQMICHERGRPAVTHWEVLTREGDKTRLALTPITGRSHQLRLHMKELGHPILGDEWYADGEARAASPRLLLHAEVLTLTHPANGERMSFTAPCPF 217
BLAST of mRNA_E-fasciculatus_F_contig106.476.1 vs. uniprot
Match: A0A233RBH1_9GAMM (Pseudouridine synthase n=4 Tax=Oceanimonas TaxID=129577 RepID=A0A233RBH1_9GAMM) HSP 1 Score: 201 bits (511), Expect = 4.160e-58 Identity = 108/218 (49.54%), Postives = 141/218 (64.68%), Query Frame = 3
Query: 429 FNAPVPPGPLEVLFVDDEIVVCNKPSDLLCVPGR--IEKDSLATRAALELGHYRVDRMIVHRLDMATSGCVIMARTDAALKDLNRQFRERQVRKRYVAMVHGVLSADEGEVDLPLCRNRGCPPLHMVNFEHGKPSLTKWRVLDRAADRTRVELIPVSGRSHQLRLHMNAIGHPILGDHFYGTKDSLALADRCLLHAHTLCLRHPKTGERTMFTAPCEF 1076
++ PV P ++L+ DD ++V NKPS LL VPGR + DSL+ R + +V VHRLDMATSG ++MA A ++L+RQFRER+ KRY A VHG S DEG +DLPLC + P HMV+ EHGK +LT WR L R R+ +EL P++GRSHQLR+HM ++GHPILGD+ Y ++L +A LHA L RHP+ R FTAP F
Sbjct: 6 YDPPVDPQ-FDILYQDDSLIVLNKPSGLLSVPGRDPVHFDSLSLRVSRVFPAVQV----VHRLDMATSGVIVMALNPKAHRELSRQFRERETEKRYYAWVHGQPSEDEGSIDLPLCCDWPNRPRHMVSHEHGKKALTHWRCLRREGQRSLMELTPITGRSHQLRVHMLSLGHPILGDNLYAEGEALTMAPHLQLHAAWLAFRHPRYKHRLEFTAPAPF 218
BLAST of mRNA_E-fasciculatus_F_contig106.476.1 vs. uniprot
Match: A0A2P7QL36_9GAMM (Pseudouridine synthase n=1 Tax=Zobellella taiwanensis TaxID=347535 RepID=A0A2P7QL36_9GAMM) HSP 1 Score: 200 bits (509), Expect = 8.740e-58 Identity = 106/208 (50.96%), Postives = 139/208 (66.83%), Query Frame = 3
Query: 459 EVLFVDDEIVVCNKPSDLLCVPGR--IEKDSLATRAALELGHYRVDRMIVHRLDMATSGCVIMARTDAALKDLNRQFRERQVRKRYVAMVHGVLSADEGEVDLPLCRNRGCPPLHMVNFEHGKPSLTKWRVLDRAADRTRVELIPVSGRSHQLRLHMNAIGHPILGDHFYGTKDSLALADRCLLHAHTLCLRHPKTGERTMFTAPCEF 1076
EVL+ D+ ++V NKPS LL VPGR + +DSL+ R A D +VHRLDMATSG ++MA A ++L+RQFRER+ KRY A V+G +AD G VDLPLC + P HMV+ EHGKP+LT WR L R R+ +EL P++GRSHQLR+HM ++GHPILGD+ Y + ++L +A + LHA L RHP+ FTAP F
Sbjct: 15 EVLYQDNSLIVLNKPSGLLSVPGREAVHRDSLSYRVA----RVYPDVQVVHRLDMATSGVIVMALHPKAHRELSRQFRERETEKRYYAWVYGSPAADAGSVDLPLCCDWPNRPRHMVSLEHGKPALTHWRCLRREPGRSLLELTPITGRSHQLRVHMLSLGHPILGDNLYASGEALTMAPQLQLHAAHLAFRHPRYRHWLEFTAPAPF 218
BLAST of mRNA_E-fasciculatus_F_contig106.476.1 vs. uniprot
Match: UPI001AA08F5F (bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA n=1 Tax=Oceanisphaera sp. DM8 TaxID=2818389 RepID=UPI001AA08F5F) HSP 1 Score: 199 bits (505), Expect = 3.200e-57 Identity = 110/218 (50.46%), Postives = 139/218 (63.76%), Query Frame = 3
Query: 429 FNAPVPPGPLEVLFVDDEIVVCNKPSDLLCVPGR--IEKDSLATRAALELGHYRVDRMIVHRLDMATSGCVIMARTDAALKDLNRQFRERQVRKRYVAMVHGVLSADEGEVDLPLCRNRGCPPLHMVNFEHGKPSLTKWRVLDRAADRTRVELIPVSGRSHQLRLHMNAIGHPILGDHFYGTKDSLALADRCLLHAHTLCLRHPKTGERTMFTAPCEF 1076
+N P+ P E+L+ DD I+V NKPS LL VPGR + DSLA R A IVHRLDMATSG +++A A +L+RQFRER+ KRY A V+G + D G VD+PLC + P MVN+E+GK +LT WR L R ADR+ VEL P++GRSHQLR+HM ++GH ILGD+ Y ++L +A LLHA L HP T E FTAP F
Sbjct: 6 YNPPMDPA-FEILYQDDSIIVLNKPSGLLSVPGRERVHHDSLALRVA----RVYPTAKIVHRLDMATSGVIVIALHAKAHSELSRQFRERETAKRYYAWVYGRPAEDAGSVDVPLCCDWPNRPRQMVNYEYGKAALTHWRCLRRLADRSLVELTPITGRSHQLRVHMKSLGHVILGDNLYAEGEALTMAPHLLLHASELAFYHPDTHEWLTFTAPAPF 218 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig106.476.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig106.476.1 >prot_E-fasciculatus_F_contig106.476.1 ID=prot_E-fasciculatus_F_contig106.476.1|Name=mRNA_E-fasciculatus_F_contig106.476.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=329bp MPRRALPACVLSSSPSRLRCLAVLTAAWGSHGFRSISSGNGGTRVRAATAback to top mRNA from alignment at E-fasciculatus_F_contig106:3975..7420+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig106.476.1 ID=mRNA_E-fasciculatus_F_contig106.476.1|Name=mRNA_E-fasciculatus_F_contig106.476.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3446bp|location=Sequence derived from alignment at E-fasciculatus_F_contig106:3975..7420+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig106:3975..7420+ >mRNA_E-fasciculatus_F_contig106.476.1 ID=mRNA_E-fasciculatus_F_contig106.476.1|Name=mRNA_E-fasciculatus_F_contig106.476.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1974bp|location=Sequence derived from alignment at E-fasciculatus_F_contig106:3975..7420+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |