mRNA_E-fasciculatus_F_contig1059.472.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1059.472.1
Unique NamemRNA_E-fasciculatus_F_contig1059.472.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1059.472.1 vs. uniprot
Match: D8LHY8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHY8_ECTSI)

HSP 1 Score: 316 bits (809), Expect = 3.990e-102
Identity = 163/211 (77.25%), Postives = 179/211 (84.83%), Query Frame = 1 
Query:    1 MITTAVFLGLLVAANAHLSQQRMFGTSGRALGGRATRSSMAFSCQRPRCHRDICPATRGQTKTTPAAGKSYRLQGSRQLWLAAPRSAGEWRKENGAGAAAKCLGQEIAQVLRINGTRLILHFDLNKTLIMVDPAGRKTQSQVLNSVLAEICWGHVEPSGADKSSVWTWDGSFSAPVRKAPPSTDPPLSRTPSGSHGPQQHHQQETAPVVLV 633
            MITTAVFLGLLV+ NAH SQQRMFGTSGR +GGRATRSS AF CQRPRCHR I PAT G  K TP +G++YRLQ  R++ LAAPR + EW KENGAGAAAK LGQEIAQVLR  GTRLILHFDLNKTLIMVDPAGRKTQSQVLNSVLA+ICWGHVE SGA ++SVWTW+GSFS+P+RKAPPST+P L RTPSG  G Q  + QETAPV LV
Sbjct:    1 MITTAVFLGLLVSGNAHRSQQRMFGTSGRTIGGRATRSSTAFFCQRPRCHRGIYPATWG--KVTPPSGRNYRLQDCRRVCLAAPRPSEEWGKENGAGAAAKRLGQEIAQVLRTTGTRLILHFDLNKTLIMVDPAGRKTQSQVLNSVLADICWGHVEHSGAKETSVWTWNGSFSSPIRKAPPSTEPSLRRTPSGPRGLQPQNHQETAPVALV 209
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BLAST of mRNA_E-fasciculatus_F_contig1059.472.1 vs. uniprot
Match: A0A6H5L7S9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7S9_9PHAE)

HSP 1 Score: 256 bits (654), Expect = 2.650e-79
Identity = 139/189 (73.54%), Postives = 150/189 (79.37%), Query Frame = 1 
Query:   67 MFGTSGRALGGRATRSSMAFSCQRPRCHRDICPATRGQTKTTPAAGKSYRLQGSRQLWLAAPRSAGEWRKENGAGAAAKCLGQEIAQVLRINGTRLILHFDLNKTLIMVDPAGRKTQSQVLNSVLAEICWGHVEPSGADKSSVWTWDGSFSAPVRKAPPSTDPPLSRTPSGSHGPQQHHQQETAPVVLV 633
            MFGTSGR +GGRATR+S A  CQRPR +RDI  A  G  KTTP AG+SYRLQG RQL LA PR A EW KENGAG AAK LGQEIAQVLR NGTRLILHFDLNKTLIMVDPAGRKTQ+QVLNSVLAEICWGHVE SGA+++SVWTW+G        APPST+PPL RT SGS G QQ +   TAPV LV
Sbjct:    1 MFGTSGRTIGGRATRTSTALFCQRPRRYRDIYHAAPG--KTTPPAGRSYRLQGCRQLCLAPPRPAVEWGKENGAGDAAKRLGQEIAQVLRTNGTRLILHFDLNKTLIMVDPAGRKTQAQVLNSVLAEICWGHVEHSGAEETSVWTWNG--------APPSTEPPLRRTLSGSRGLQQQNHHVTAPVALV 179
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BLAST of mRNA_E-fasciculatus_F_contig1059.472.1 vs. uniprot
Match: A0A7S0ARF8_9DINO (Hypothetical protein (Fragment) n=1 Tax=Pyrodinium bahamense TaxID=73915 RepID=A0A7S0ARF8_9DINO)

HSP 1 Score: 52.8 bits (125), Expect = 1.010e-5
Identity = 22/45 (48.89%), Postives = 32/45 (71.11%), Query Frame = 1 
Query:  352 LILHFDLNKTLIMVDPAGRKTQSQVLNSVLAEICWGHVEPSGADK 486
            L+LHFD+NKT++MVD A +K+   V + V   + WG VEP+G D+
Sbjct:   39 LVLHFDVNKTIVMVDSATKKSIRDVAHEVFTCVSWGTVEPAGDDR 83
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BLAST of mRNA_E-fasciculatus_F_contig1059.472.1 vs. uniprot
Match: A0A0D2WYT6_CAPO3 (Uncharacterized protein n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2WYT6_CAPO3)

HSP 1 Score: 54.3 bits (129), Expect = 3.940e-5
Identity = 31/77 (40.26%), Postives = 38/77 (49.35%), Query Frame = 1 
Query:  352 LILHFDLNKTLIMVDPAGRKTQSQVLNSVLAEICWGHVEPSGADKSSVWTWDGSFSAPVRKAPPSTDPPLSRTPSGS 582
            ++LHFD+NKT++M D AG K    +LN VLAE CWG V  +G                 R AP S DP     P  S
Sbjct:    3 VVLHFDVNKTVVMDDAAGSKDFIDILNEVLAESCWGRVALNG-----------------RGAPTSADPATDPAPPAS 62
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BLAST of mRNA_E-fasciculatus_F_contig1059.472.1 vs. uniprot
Match: A0A7S0DKZ4_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DKZ4_9EUKA)

HSP 1 Score: 53.9 bits (128), Expect = 5.600e-5
Identity = 23/50 (46.00%), Postives = 33/50 (66.00%), Query Frame = 1 
Query:  352 LILHFDLNKTLIMVDPAGRKTQSQVLNSVLAEICWGHVEPSG-ADKSSVW 498
            L+LHFD+NKT+IM+D A  K+ S +LN V+A   WGH+      +  +VW
Sbjct:   30 LVLHFDVNKTIIMIDKAAGKSTSDLLNIVIANAAWGHIHKGEEGEGKAVW 79
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BLAST of mRNA_E-fasciculatus_F_contig1059.472.1 vs. uniprot
Match: A0A6B2L6Y9_9EUKA (Uncharacterized protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2L6Y9_9EUKA)

HSP 1 Score: 53.1 bits (126), Expect = 8.890e-5
Identity = 24/60 (40.00%), Postives = 37/60 (61.67%), Query Frame = 1 
Query:  352 LILHFDLNKTLIMVDPAGRKTQSQVLNSVLAEICWGH---VEPSGADKSSV------WTW 504
            +ILHFD+NKT+I+ DPAG K+ S+ +N ++ E+ WG    +  + AD+  V      W W
Sbjct:    1 MILHFDINKTIIISDPAGGKSVSECINGIIGEVVWGTKKALSAASADELKVSLVIDQWVW 60
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1059.472.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LHY8_ECTSI3.990e-10277.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L7S9_9PHAE2.650e-7973.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S0ARF8_9DINO1.010e-548.89Hypothetical protein (Fragment) n=1 Tax=Pyrodinium... [more]
A0A0D2WYT6_CAPO33.940e-540.26Uncharacterized protein n=1 Tax=Capsaspora owczarz... [more]
A0A7S0DKZ4_9EUKA5.600e-546.00Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
A0A6B2L6Y9_9EUKA8.890e-540.00Uncharacterized protein n=1 Tax=Arcella intermedia... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1059contigE-fasciculatus_F_contig1059:17193..20376 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score319.3
Seed ortholog evalue1.3e-84
Seed eggNOG ortholog2880.D8LHY8
EggNOG OGs2CXG7@1,2RX7W@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons4
Model size633
Cds size633
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1059.472.1prot_E-fasciculatus_F_contig1059.472.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1059 17193..20376 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927556.7509778-CDS-E-fasciculatus_F_contig1059:17192..172321622927556.7509778-CDS-E-fasciculatus_F_contig1059:17192..17232Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1059 17193..17232 +
1695995594.1722047-CDS-E-fasciculatus_F_contig1059:17192..172321695995594.1722047-CDS-E-fasciculatus_F_contig1059:17192..17232Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1059 17193..17232 +
1622927556.7631168-CDS-E-fasciculatus_F_contig1059:17959..183421622927556.7631168-CDS-E-fasciculatus_F_contig1059:17959..18342Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1059 17960..18342 +
1695995594.1904228-CDS-E-fasciculatus_F_contig1059:17959..183421695995594.1904228-CDS-E-fasciculatus_F_contig1059:17959..18342Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1059 17960..18342 +
1622927556.7747898-CDS-E-fasciculatus_F_contig1059:19400..194871622927556.7747898-CDS-E-fasciculatus_F_contig1059:19400..19487Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1059 19401..19487 +
1695995594.2052634-CDS-E-fasciculatus_F_contig1059:19400..194871695995594.2052634-CDS-E-fasciculatus_F_contig1059:19400..19487Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1059 19401..19487 +
1622927556.786883-CDS-E-fasciculatus_F_contig1059:20253..203761622927556.786883-CDS-E-fasciculatus_F_contig1059:20253..20376Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1059 20254..20376 +
1695995594.2244406-CDS-E-fasciculatus_F_contig1059:20253..203761695995594.2244406-CDS-E-fasciculatus_F_contig1059:20253..20376Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1059 20254..20376 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1059.472.1

>prot_E-fasciculatus_F_contig1059.472.1 ID=prot_E-fasciculatus_F_contig1059.472.1|Name=mRNA_E-fasciculatus_F_contig1059.472.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=211bp
MITTAVFLGLLVAANAHLSQQRMFGTSGRALGGRATRSSMAFSCQRPRCH
RDICPATRGQTKTTPAAGKSYRLQGSRQLWLAAPRSAGEWRKENGAGAAA
KCLGQEIAQVLRINGTRLILHFDLNKTLIMVDPAGRKTQSQVLNSVLAEI
CWGHVEPSGADKSSVWTWDGSFSAPVRKAPPSTDPPLSRTPSGSHGPQQH
HQQETAPVVLV
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mRNA from alignment at E-fasciculatus_F_contig1059:17193..20376+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1059.472.1 ID=mRNA_E-fasciculatus_F_contig1059.472.1|Name=mRNA_E-fasciculatus_F_contig1059.472.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3184bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1059:17193..20376+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGATCACCACCGCAGTCTTCCTGGGTTTGCTTGTAGCCGGTGAGTCACT
CTGATCTGCAATAACTCTGTCTGCTGTCTGCGCTCTGGTGAAAGCCAAGA
CAGCAGTAGTGCCTGTGTCTCCTCTGTGCTCTGCGTGCAAGACCTGTCAG
CTATACAGCAAGTAGGTACAACCCGCCCTGGTGAGTGCGAGAGGACACGT
GTAGTGGCTGCAGGCGATAGGCCCCTTGCTTCATCAGCGAGAACTAAGCA
CGTGTTTGTGGTACATGTAGACTAAAAGAGCTCTTCTCCTGCAGGCACCT
GCTTTGTACAGGTACACAACAACGTAGGCAGGGTACCGGATTACTGCTGT
AGACTATGTAGTCTGATCGCGTTGGTGATTTGCTGCTTCCATCTCTTTTT
GGTTCCCTTTCTACTGTGCGGGGCTTCCTCTGTCGCCTATAGGTAGAAAA
TTCCGGTGCTCCCTCCAACGTTATCAATGGACTTGATGTTTCTACGCAGG
CCGCAACGAGTACTCTCGGCAGGCCCGGTGGTGGGGGGACCTAGACCAAT
TTGGTGACTGCTTGCGTAGTGTGCGTCTTGCCCGAGTGGAGTATGGAAGA
GTTGCGGTTGATTCCCTGGCAGAAGATACCTTTCATCAACTCCGTGGGAT
GGCCACGCTGTTCACCCACTGCGGAACTTCTTGCAACCAAGATACCACAA
CGGAGTTCTAACACATACTTTTGCATGTACCCTAACCCATGTACGAACAA
CATCCCGCATGCCACAGCGAACGCACACCTCAGCCAGCAACGCATGTTCG
GGACCAGCGGCCGAGCTCTCGGTGGTCGGGCCACGAGGAGTTCGATGGCG
TTCTCCTGCCAAAGACCGCGATGCCACCGCGATATCTGCCCCGCTACACG
AGGGCAGACAAAGACAACCCCCGCCGCCGGCAAGAGCTACAGGCTCCAGG
GTTCCAGACAGTTGTGGTTGGCAGCTCCACGCTCCGCGGGGGAATGGAGG
AAGGAAAATGGGGCTGGAGCAGCAGCTAAGTGCCTCGGACAGGAAATAGC
GCAGGTCCTACGAATCAATGGGACGCGATTGATTCTGCACTTCGACCTGA
ACAAGACTCTGATCATGGTTGACCCAGCCGGTCGGAAGACCCAATCCCAG
GTATTTACAATACTTGATTGGAGGATCTTCGGTAGTCCTTGATACTGCTA
TACCGATGATATGACCATCTTCCCACGCTATGAAATTTGATGAAAAGCAG
CATGAGTGATGTGATGTTTAGCGCTGCTGCCGCCTGCGACGCGTTGTTTT
GACGTAAAAGAGTACAGCAACGATGCGGGGATGCTTTGTACTACAGTCTC
CGATCAGGCAGCTTGTCGATCAGCTTGTGTAAGAAACCGAAACACCAACG
ACAGTAATCGATTAAACCAGCAGAAAAAACAGAGGCGGCAGCGACAGCAG
CCAACCTGAAGCTCTCTGATTGCAGACGCTGCCCTTGTGGGAAAATCGTC
CTGGAATACAGATTTGTTTCATTCAGGAATCAGGAGTAGAACAACAGTAG
CTGAGGTGTATCTTCGCCAATCCTCCTGATCTTGTGTGCCTGGCACCCGC
GATAGGACTGAGAAAGCTGCGAATCCACCGGCAGGCAGCACTCTAGCAAC
ACGGGTGGTTCTAGTCTAACTGGCTGTCGTTGGATACGCACTCAGTGCCT
GACTATTTCCGGCCTATGCACACCATCGTGTTAAGGAAGGCATGTTGCGC
GTTAACCAGAGCTCATTCGTGCAATCTCATCGGTGATAAACCGGTGCGCT
TGTGTCACCACCTCTCTCGGAAGAAGCTGTTTGTGTGCCGTCGCTTCACC
TCCCTTCTACGCCGTAAAACCTTCAAGGCTCCGGAGGTACCAACATTTTC
CTTGATCTTGTTCCAGCGGGTGCAGTCTTTGTTCCTCGGGCGCCTGTCCC
CTGGCTGTCTAACGTCACAAGGTCGCTCGCGGCGTGGTTGTAAGCGGAGC
TTTCCCCCCCCCCAGCGCACCGTGCGCACACGGTATATCCCGCTGTTTGG
GAGGCACAAAACGCACGAAACACCCGTAAACATTCCCTCCAAGTGTCTCA
GATTGTGGCTCAACGAAATGCCCCCGGTTACAACGCTTTAGACGCCAAAC
GCACACGGCATGCCGAACGCTGGCATGGCCTCTGCTTTCACCGACTCGCG
TGGAATAGGTCCTCAACAGCGTGCTCGCGGAGATATGCTGGGGGCACGTG
GAACCTTCCGGAGCAGATAAATCGTCAGTATGGACATGGGATGGGGTGAG
TTGAGAGCTTGTTCGAAAGGGGCGCCAGAAGGGGAAATCATAGCGGTGTT
TCTGCCCTGACGATGGCTGACAAGGCGGGGGCAGGTAGCTGGAACTGGTG
GCTTTTCCAGACGTACCTAGGATGGAGTGTGCACAAAGTGTTGCTTGAAA
AGAGGGTGACAGTGCGAGAATGGTACGTCGAACGTGTCTCGCAACCTTAA
CTCCATTTCGCTTTTGGGGTGAGGTATGCCACGGATGTGAGAGGCTCCAT
GCGTTTCGCAGCGCCCTTTCATCTGGAATTCGTAGTCCCTTGGATACCGG
GCGCCTCCGCTGGCGGTGTTAACGGATGGTACAGGGGTAAGACATTGTTC
CAGTGCACACGTAAACGCGCTCTATCTTCGCCTCTATTGTTTGTAGGCCG
TCCCTTTGAAGGCCATATCCTCTCGCCGTAGTTTACTCCTTCTTCCCCGT
CTGGACACCGTCAATTCCCCATTAAGCTTGTTCGTTCTGTTTCACAGTTC
TGCCGCCCACTCATCGGTGGCAATCTCCTTGATCACCGTTCATCCACGGC
CGTTCCATTTGATACCGTCCATCTCCCACGCGCGTGTGCACTGCAGCTAC
GGTGCCCCCCTCCCCTCACCCTATTCGCCCTTTCAACGCCCGATTTCGTC
GAATTTTTTTATTCTTCACCACATCAACTGTGTGAAACTGCCCGTGTTCT
AGCTACCATAGGCCGCATCCATTATCTTCTTTCTCGACGCAACCAGAACA
TCGCGTCTTAGAGTTTCTCCGCCCCTGTCCGGAAGGCCCCCCCCTCGACA
GACCCTCCCCTGTCGAGAACGCCATCTGGGTCGCATGGCCCGCAGCAACA
TCACCAACAGGAGACCGCCCCAGTAGTTCTCGTC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1059:17193..20376+

>mRNA_E-fasciculatus_F_contig1059.472.1 ID=mRNA_E-fasciculatus_F_contig1059.472.1|Name=mRNA_E-fasciculatus_F_contig1059.472.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1266bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1059:17193..20376+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGATCACCACCGCAGTCTTCCTGGGTTTGCTTGTAGCCGATGATCACCA
CCGCAGTCTTCCTGGGTTTGCTTGTAGCCGCGAACGCACACCTCAGCCAG
CAACGCATGTTCGGGACCAGCGGCCGAGCTCTCGGTGGTCGGGCCACGAG
GAGTTCGATGGCGTTCTCCTGCCAAAGACCGCGATGCCACCGCGATATCT
GCCCCGCTACACGAGGGCAGACAAAGACAACCCCCGCCGCCGGCAAGAGC
TACAGGCTCCAGGGTTCCAGACAGTTGTGGTTGGCAGCTCCACGCTCCGC
GGGGGAATGGAGGAAGGAAAATGGGGCTGGAGCAGCAGCTAAGTGCCTCG
GACAGGAAATAGCGCAGGTCCTACGAATCAATGGGACGCGATTGATTCTG
CACTTCGACCTGAACAAGACTCTGATCATGGTTGACCCAGCCGGTCGGAA
GACCCAATCCCAGCGAACGCACACCTCAGCCAGCAACGCATGTTCGGGAC
CAGCGGCCGAGCTCTCGGTGGTCGGGCCACGAGGAGTTCGATGGCGTTCT
CCTGCCAAAGACCGCGATGCCACCGCGATATCTGCCCCGCTACACGAGGG
CAGACAAAGACAACCCCCGCCGCCGGCAAGAGCTACAGGCTCCAGGGTTC
CAGACAGTTGTGGTTGGCAGCTCCACGCTCCGCGGGGGAATGGAGGAAGG
AAAATGGGGCTGGAGCAGCAGCTAAGTGCCTCGGACAGGAAATAGCGCAG
GTCCTACGAATCAATGGGACGCGATTGATTCTGCACTTCGACCTGAACAA
GACTCTGATCATGGTTGACCCAGCCGGTCGGAAGACCCAATCCCAGGTCC
TCAACAGCGTGCTCGCGGAGATATGCTGGGGGCACGTGGAACCTTCCGGA
GCAGATAAATCGTCAGTATGGACATGGGATGGGGTCCTCAACAGCGTGCT
CGCGGAGATATGCTGGGGGCACGTGGAACCTTCCGGAGCAGATAAATCGT
CAGTATGGACATGGGATGGGAGTTTCTCCGCCCCTGTCCGGAAGGCCCCC
CCCTCGACAGACCCTCCCCTGTCGAGAACGCCATCTGGGTCGCATGGCCC
GCAGCAACATCACCAACAGGAGACCGCCCCAGTAGTTCTCGTCAGTTTCT
CCGCCCCTGTCCGGAAGGCCCCCCCCTCGACAGACCCTCCCCTGTCGAGA
ACGCCATCTGGGTCGCATGGCCCGCAGCAACATCACCAACAGGAGACCGC
CCCAGTAGTTCTCGTC
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