mRNA_E-fasciculatus_F_contig10581.463.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig10581.463.1
Unique NamemRNA_E-fasciculatus_F_contig10581.463.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10581.463.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10581contigE-fasciculatus_F_contig10581:571..1187 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size445
Cds size243
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10581.463.1prot_E-fasciculatus_F_contig10581.463.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig10581 772..1187 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927555.905461-UTR-E-fasciculatus_F_contig10581:570..7711622927555.905461-UTR-E-fasciculatus_F_contig10581:570..771Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10581 571..771 -
1695995593.6793602-UTR-E-fasciculatus_F_contig10581:570..7711695995593.6793602-UTR-E-fasciculatus_F_contig10581:570..771Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10581 571..771 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927555.9162316-CDS-E-fasciculatus_F_contig10581:771..9871622927555.9162316-CDS-E-fasciculatus_F_contig10581:771..987Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10581 772..987 -
1695995593.6930673-CDS-E-fasciculatus_F_contig10581:771..9871695995593.6930673-CDS-E-fasciculatus_F_contig10581:771..987Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10581 772..987 -
1622927555.9266968-CDS-E-fasciculatus_F_contig10581:1160..11871622927555.9266968-CDS-E-fasciculatus_F_contig10581:1160..1187Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10581 1161..1187 -
1695995593.7057729-CDS-E-fasciculatus_F_contig10581:1160..11871695995593.7057729-CDS-E-fasciculatus_F_contig10581:1160..1187Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10581 1161..1187 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig10581.463.1

>prot_E-fasciculatus_F_contig10581.463.1 ID=prot_E-fasciculatus_F_contig10581.463.1|Name=mRNA_E-fasciculatus_F_contig10581.463.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=81bp
AERARVWSQLHLAAYTALCIYDPKGTRNCGYFGYHRWEQIQQHSVDCCVR
IACLQLFLWDRSAGGMAASCSWSGGQFAAR*
back to top

mRNA from alignment at E-fasciculatus_F_contig10581:571..1187-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig10581.463.1 ID=mRNA_E-fasciculatus_F_contig10581.463.1|Name=mRNA_E-fasciculatus_F_contig10581.463.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=617bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10581:571..1187- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCAGAGCGTGCACGTGTGTGGTCACAGGTAGGAGTGTCACGGTTGCTCGC
GTTTTGTGATCGTCGAAGGCTAAGGGTTCTACCTACAACCTACAACCGTG
TTTGAGGTTTGAATCTGCAATCCCGCCGCGTTTGCAATCGGTAATCCCGC
CGCGTCCTCCGTCCCCACCTCCCACCTGTACTATGTACCCACCTCGCCAG
CTCCACCTCGCTGCCTACACGGCGCTGTGCATCTACGATCCGAAGGGGAC
AAGGAACTGCGGGTACTTTGGCTATCACCGATGGGAACAGATACAGCAAC
ATTCGGTGGACTGCTGTGTGCGTATTGCCTGTCTCCAGCTTTTTCTTTGG
GATCGTTCTGCGGGTGGCATGGCGGCATCGTGTAGCTGGTCGGGTGGTCA
ATTCGCCGCACGGTGATCGACCGTCTTTCGCGATGGTCAGTCAACAGCAA
CAGAGCAGTGGAAGGTGCAGCAATGATCAGTCCCGCTATGGTTGTGTTAA
CCTATGCAGTGCCAATTTAACCACCGCTTTGCCGCTACATGTATTGCCGG
TATGTAGTGTCCTGTACTTTAATTTGCCTACATAGGCGTGGCTCTTGTCT
TGAGTTTGACTTGTTCC
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10581:571..1187-

>mRNA_E-fasciculatus_F_contig10581.463.1 ID=mRNA_E-fasciculatus_F_contig10581.463.1|Name=mRNA_E-fasciculatus_F_contig10581.463.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=486bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10581:571..1187- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCAGAGCGTGCACGTGTGTGGTCACAGGCAGAGCGTGCACGTGTGTGGTC
ACAGCTCCACCTCGCTGCCTACACGGCGCTGTGCATCTACGATCCGAAGG
GGACAAGGAACTGCGGGTACTTTGGCTATCACCGATGGGAACAGATACAG
CAACATTCGGTGGACTGCTGTGTGCGTATTGCCTGTCTCCAGCTTTTTCT
TTGGGATCGTTCTGCGGGTGGCATGGCGGCATCGTGTAGCTGGTCGGGTG
GTCAATTCGCCGCACGGTGACTCCACCTCGCTGCCTACACGGCGCTGTGC
ATCTACGATCCGAAGGGGACAAGGAACTGCGGGTACTTTGGCTATCACCG
ATGGGAACAGATACAGCAACATTCGGTGGACTGCTGTGTGCGTATTGCCT
GTCTCCAGCTTTTTCTTTGGGATCGTTCTGCGGGTGGCATGGCGGCATCG
TGTAGCTGGTCGGGTGGTCAATTCGCCGCACGGTGA
back to top