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Homology
BLAST of mRNA_E-fasciculatus_F_contig10577.458.1 vs. uniprot
Match: D8LHS0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHS0_ECTSI) HSP 1 Score: 572 bits (1474), Expect = 8.010e-190 Identity = 360/658 (54.71%), Postives = 427/658 (64.89%), Query Frame = 1
Query: 55 QKPAHYAVLSGLGRLVRAVNTPTSHVCDEYTSEVMGEGWRGNMHPKGNLAGGKLDGAQKTVVAAGWKTLSYHVKKVLGGDTALKKMKGNTWETLVYGIGLDGESPIIRVIMERFLNEDDLNSTEASGDDNEVQAPPTPSPQCLTALFGLLRTTQASPTLRAAILRDGIVNSVKDLAFGEARLDIVRMLASSIAGGAMREADGKNRMPDVKGAAALLPTFVSPEEQAIFEADGGKRTKQLLDVVETYWKPVLSALG-RKAKFVTAINKKALSGEIGQSNKTNATPAAGKPVVVSTHATRVKFNQAVVEHFLGFVGAQESDEDERKSARLLAVEFAMLCVDRVLDDKNKFNDLYGALDEDSWTRKMLQTNPTSLRSSEGESFFDEARLSAMASPKPASSSKGDGATNKADGGAAEEGESVDGGNAGSPGGTGTANQPNVTIRRPGSGHAIPFTLPGPVVSELGLGRGSSVMVKISRLAAADVPAPAGREGRDSESGTGSDRERDNAQGGGDADTGGGAPDNGYVCSLNNSPSLSPDRRRVTSLSK-------SGDSSESVSSESGDGDATGGGDEANGRTGKRSSEDSEQGDTSRTRPSLQSHARPYGSRITAAEDTQNFSSGGTDFFTRRLGVAENDS-SRLLKAPVTANDVDDNSPDT 2001
+KP H+AV+SGLGRLVRA+N P +C+EY EVMG+GWR N+HP G++ G + Q TV AA WK L++HVKK+L G+ AL+KMKGN+WE+LVYG GLD +SPII+ IM RF ED+LN +++ P PQCLTA FGLLRTTQASP L A IL GIVNSVKD A E LD+VRMLA SIAGGA+R DG+NRM V+GAAALLPTFVSPEEQA+FEAD GKR KQLLDV+ETYWKPV+ ALG K KFVTAINKKALSG IGQSNKT TP GKP+ +S A+RV+F+QAVV FL F G QE D+ K AR LAVEFAMLCV+RVLDD+ KF+ +GALD++SW + +LQTNP S +S +GE FFDEARLSAMAS KP S G G T+ GG+AE ESVD G+ SPGG GT N+PNVTIRR GS HA PFT+P V++ELGLGRG SV ERD ++ G A+TG A DNG S + S SG E T KRSSE SE G+TSR R +S RITAA +TQNFSS G DF + +LG A DS + LK+PV +N VDDN P+T
Sbjct: 237 RKPGHFAVISGLGRLVRALNNPELRLCEEYAKEVMGDGWRRNLHPMGSVDGTRNKAEQATVAAA-WKVLNFHVKKILEGEGALRKMKGNSWESLVYGKGLDEDSPIIKAIMARFWKEDELNGLDSAAS--------KPLPQCLTACFGLLRTTQASPKLAAVILEHGIVNSVKDFALDEGHLDVVRMLALSIAGGALRAVDGENRMV-VEGAAALLPTFVSPEEQALFEADDGKRKKQLLDVLETYWKPVIYALGSNKNKFVTAINKKALSGRIGQSNKTVTTPGPGKPLHISIDASRVEFDQAVVTTFLLFEGTQEKDKVNSKLARQLAVEFAMLCVERVLDDRTKFDAFFGALDKNSWVKNVLQTNPASWQSRQGEKFFDEARLSAMASKKPESGKGGGGTTSTGHGGSAEREESVDSGDGDSPGGDGTTNEPNVTIRRSGSEHAFPFTMPERVIAELGLGRGDSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSERDISRSGDGAETGERALDNGEPRSCSEGGSXXXXXXXXXXXXXXXXXXXXSGSDCERXXXXXXXXXXXXXXXXXXXLTRKRSSESSE-GNTSRRRRRTESAGN---GRITAAGNTQNFSSRGGDFRSLKLGGARTDSPTSPLKSPVPSN-VDDNDPET 879
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-18_000210.1 |
| Exons | 6 |
| Model size | 2001 |
| Cds size | 2001 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig10577.458.1 >prot_E-fasciculatus_F_contig10577.458.1 ID=prot_E-fasciculatus_F_contig10577.458.1|Name=mRNA_E-fasciculatus_F_contig10577.458.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=667bp
MLASVPPTVRTGHAGVPVQKPAHYAVLSGLGRLVRAVNTPTSHVCDEYTS
EVMGEGWRGNMHPKGNLAGGKLDGAQKTVVAAGWKTLSYHVKKVLGGDTA
LKKMKGNTWETLVYGIGLDGESPIIRVIMERFLNEDDLNSTEASGDDNEV
QAPPTPSPQCLTALFGLLRTTQASPTLRAAILRDGIVNSVKDLAFGEARL
DIVRMLASSIAGGAMREADGKNRMPDVKGAAALLPTFVSPEEQAIFEADG
GKRTKQLLDVVETYWKPVLSALGRKAKFVTAINKKALSGEIGQSNKTNAT
PAAGKPVVVSTHATRVKFNQAVVEHFLGFVGAQESDEDERKSARLLAVEF
AMLCVDRVLDDKNKFNDLYGALDEDSWTRKMLQTNPTSLRSSEGESFFDE
ARLSAMASPKPASSSKGDGATNKADGGAAEEGESVDGGNAGSPGGTGTAN
QPNVTIRRPGSGHAIPFTLPGPVVSELGLGRGSSVMVKISRLAAADVPAP
AGREGRDSESGTGSDRERDNAQGGGDADTGGGAPDNGYVCSLNNSPSLSP
DRRRVTSLSKSGDSSESVSSESGDGDATGGGDEANGRTGKRSSEDSEQGD
TSRTRPSLQSHARPYGSRITAAEDTQNFSSGGTDFFTRRLGVAENDSSRL
LKAPVTANDVDDNSPDT back to topmRNA from alignment at E-fasciculatus_F_contig10577:513..3909+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig10577.458.1 ID=mRNA_E-fasciculatus_F_contig10577.458.1|Name=mRNA_E-fasciculatus_F_contig10577.458.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3397bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10577:513..3909+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTTGGCGTCTGTCCCGCCGACGGTTCGAACTGGCCATGCGGGCGTGCC
CGTACAGAAACCTGCGCACTACGCCGTCCTCTCAGGGCTTGGGCGTCTGG
TGCGCGCGGTGAATACCCCTACATCTCACGTGTGTGATGAGTACACAAGC
GAGGTGATGGGTGAGGGTTGGAGGGGGAACATGCATCCTAAGGGTAACTT
GGCGGGCGGGAAACTGGACGGAGCTCAGAAAACAGTGGTCGCAGCAGGGT
GGAAAACGCTTTCCTATCACGTGAAGAAGGTTCTCGGGGGTGACACCGCA
TTGAAGAAGATGAAGGGGAATACGTGGGAGACACTAGTGTACGGCATCGG
GCTTGATGGAGAGAGCCCCATCATCAGGGTCATCATGGAAAGGTTTTTGA
ACGAGGACGACCTGAACTCGACCGAGGTATGTATGTATCCGCGTATATAT
TGTATGCAGTTTTCTTTTCTCTTGGGGGCAATTGTGTGTTTTCCGGTGTG
GCGTGCATTGCGCCTCGTGTGCGCGCCGTTGCGTGTCTTCCAAGCTAGCT
ATAGCCATCAAGTACACGTTGAAAGGTTGGATGTTCATAAAGTCTATTAG
CAGTTCGCTGACGTATGCTTTCAATGCGATCAATGCCACGTCGCGCAATA
CGTATTTTCGATCAACTTGCAGGCGTCGGGAGACGACAACGAGGTCCAGG
CGCCTCCCACCCCATCGCCGCAGTGCCTTACGGCGTTGTTCGGATTGCTG
CGAACGACCCAGGCGAGCCCGACACTGAGAGCGGCGATTCTCAGGGATGG
AATCGTCAATAGCGTCAAGGACTTGGCGTTTGGTGAGGCGCGACTTGACA
TCGTTCGCATGCTTGCTTCTTCGATCGCTGGCGGAGCAATGCGCGAAGCT
GATGGCAAGAATAGGATGCCCGACGTGAAGGGCGCGGCGGCGCTGCTACC
GACGTTTGTTTCACCCGAGGAGCAAGCGATCTTCGAAGCGGACGGTGGGA
AGCGCACGAAGCAACTTCTAGATGTTGTGGAGACTTACTGGAAGCCGGTC
CTCTCCGCTCTCGGACGAAAGGCCAAGTTCGTAACCGCCATCAACAAGAA
AGCGCTGTCCGGGGAGATAGGACAGTCGAACAAGACCAACGCGACTCCTG
CGGCCGGTAAACCAGTGGTCGTCTCCACACACGCCACTCGTGTTAAATTC
AATCAGGCCGTGGTAGAACATTTTTTAGGCTTCGTAGGGGCTCAAGAGTC
CGACGAAGACGAACGTAAATCGGCGAGACTGCTGGCCGTTGAGTTCGCCA
TGCTCTGCGTAGACCGTGTGCTCGACGACAAGAACAAGTTCAACGATTTG
TACGGCGCGTTGGACGAGGACAGCTGGACGAGGAAGATGCTGCAGACGAA
CCCGACAAGCTTGCGATCATCGGAAGGAGAGAGCTTTTTCGACGAGGCCC
GTCTCTCGGCAATGGCAAGCCCTAAACCTGCCAGTAGCAGCAAGGGGGAT
GGCGCAACCAACAAGGCGGACGGGGGTGCAGCGGAGGAAGGGGAGTCAGT
GGATGGCGGGAATGCCGGCAGCCCAGGTATGTTCATGGTCTAGATACGCG
GGTAGGTTTCGTTCTCACGTGTGGCACTCTGGCCTGTAGGGTTCCGACTT
TAGCATCACCTCCACCCTCGCTGATAGTCACCGAATTATTCGGTCTGCTG
TGTCGGTTGCGTAACTGAGTAGCATAGCGTTGACCTTAAATCGGTCTGGC
AATCGGTCTGCGACGCCTTTCGAGACGCCGCATGAGGTCATGTATATAGC
CTAACCGCACAACCTTCCGCTGTTAATCCACTATTTACGACGCTACAGGC
GGCACTGGAACAGCGAACCAGCCGAACGTGACCATCCGCCGTCCCGGTAG
CGGGCATGCTATTCCCTTCACCTTGCCGGGACCTGTCGTCAGCGAGCTGG
GTTTGGGACGTGGCTCCAGTGTGATGGTGAAAATCTCTCGACTTGCAGCG
GCGGACGTTCCCGCCCCCGCGGGCCGCGAGGGGAGGGATTCTGAATCAGG
GACCGGCAGTGATCGCGAGCGAGATAACGCCCAGGGCGGTGGTGATGCTG
ACACTGGCGGAGGAGCCCCCGACAACGGGTACGTATGTAGTTTGAACAAT
TCCCCGTCCCTATCGCCTGATCGTCGACGAGTGACTTCTCTATCAAAGTA
CGGAATGCGGGAAATCGGTCCTGTTACAAACACACTTCGTTGCCTGTTTG
GTGACAGCTCAACCATGCCACCGCTGTGTCTTCTTGTCGATGACCTCGTT
CTCTTTGTACGGAACCCAGGAGCGGCGATAGTAGCGAGAGCGTCAGCAGC
GAGAGTGGTGATGGCGATGCGACCGGCGGCGGAGACGAGGCCAACGGGTA
TGTTGCTTGAACAATCCTCGGTCCCTTTCGCCTAATCGTCGACGAGTGAG
TTTTCTCTCAAGTATGGAATGCGGGAAAGTGGTGCGGTTAAAAATCGCAC
GTCATGTTGTACCTTTCTATGCCCCCGTTTGGTGACAGCTCAACCATGCT
GCCGCTCTGTCTTCTTGTCGAGTGACTTCTCTCTTAATGAACGGGAGACG
GGCGATTGGTGCTGTTGACAACCGCACTTGGTTCACGTACCGTCATGAAT
GCGCTGTGTAACGGTTACATGCAGGCGAACCGGGAAGCGGTCGAGTGAGG
ACTCCGAGCAGGGGGATACCTCAAGAACTCGTCCAAGGTGACACGATTGG
TTGGTTCGTTCTTGTCGATAATTTCTCTTCTCCATGTATGGAAACGAGCA
CGTGGTGAACGATGTTGTTGCCGTTGCCCCCGTGTGGTTACGGCCCCAGT
ATGTTCCTTGCTTTCTTTCGATGATCTATTCTGTTTTCGCATTGAATCAA
GCGCGCGGTGGACGGTGTTGCTGTCGTTGCCGGCGTGTGGTAACCGCGCC
GGTATGTTGCTGTGAGTGTTCTTGTTGGTGGCGACCTCGTTCTCCATGTA
TGGAACCTCTTTCTCCATGTATGGAACTTAGCACGTGGTGGACTACAGTG
CATGTGTTGCTGTCGTTGCCTCCCTGTGGTTACAGCGCCACTGTGTTCCT
GTGTTTTCTCTCCGATGGCCTCTTTTCTCCATGTATGGAAGTCAGCCACG
CGGTGTTGTTGATGGCCGTACTCGCTTGAACCGTCTCGTGGAACCGGCGT
TTCGACGTATATACAGTTTACAATCACACGCTCGTCCGTACGGCTCCAGG
ATCACCGCGGCTGAAGACACGCAGAACTTCAGTTCGGGGGGAACTGACTT
CTTTACACGCAGGTTAGGGGTCGCCGAGAACGACAGCTCGAGGCTCCTGA
AAGCCCCGGTGACTGCCAACGATGTTGATGACAACAGCCCGGATACG back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig10577:513..3909+ >mRNA_E-fasciculatus_F_contig10577.458.1 ID=mRNA_E-fasciculatus_F_contig10577.458.1|Name=mRNA_E-fasciculatus_F_contig10577.458.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=4002bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10577:513..3909+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTTGGCGTCTGTCCCGCCGACGGTTCGAACTGGCCATGCGGGCGTGCC
CGTACAGAAACCTGCGCACTACGCCGTCCTCTCAGGGCTTGGGCGTCTGG
TGCGCGCGGTGAATACCCCTACATCTCACGTGTGTGATGAGTACACAAGC
GAGGTGATGGGTGAGGGTTGGAGGGGGAACATGCATCCTAAGGGTAACTT
GGCGGGCGGGAAACTGGACGGAGCTCAGAAAACAGTGGTCGCAGCAGGGT
GGAAAACGCTTTCCTATCACGTGAAGAAGGTTCTCGGGGGTGACACCGCA
TTGAAGAAGATGAAGGGGAATACGTGGGAGACACTAGTGTACGGCATCGG
GCTTGATGGAGAGAGCCCCATCATCAGGGTCATCATGGAAAGGTTTTTGA
ACGAGGACGACCTGAACTCGACCGAGATGTTGGCGTCTGTCCCGCCGACG
GTTCGAACTGGCCATGCGGGCGTGCCCGTACAGAAACCTGCGCACTACGC
CGTCCTCTCAGGGCTTGGGCGTCTGGTGCGCGCGGTGAATACCCCTACAT
CTCACGTGTGTGATGAGTACACAAGCGAGGTGATGGGTGAGGGTTGGAGG
GGGAACATGCATCCTAAGGGTAACTTGGCGGGCGGGAAACTGGACGGAGC
TCAGAAAACAGTGGTCGCAGCAGGGTGGAAAACGCTTTCCTATCACGTGA
AGAAGGTTCTCGGGGGTGACACCGCATTGAAGAAGATGAAGGGGAATACG
TGGGAGACACTAGTGTACGGCATCGGGCTTGATGGAGAGAGCCCCATCAT
CAGGGTCATCATGGAAAGGTTTTTGAACGAGGACGACCTGAACTCGACCG
AGGCGTCGGGAGACGACAACGAGGTCCAGGCGCCTCCCACCCCATCGCCG
CAGTGCCTTACGGCGTTGTTCGGATTGCTGCGAACGACCCAGGCGAGCCC
GACACTGAGAGCGGCGATTCTCAGGGATGGAATCGTCAATAGCGTCAAGG
ACTTGGCGTTTGGTGAGGCGCGACTTGACATCGTTCGCATGCTTGCTTCT
TCGATCGCTGGCGGAGCAATGCGCGAAGCTGATGGCAAGAATAGGATGCC
CGACGTGAAGGGCGCGGCGGCGCTGCTACCGACGTTTGTTTCACCCGAGG
AGCAAGCGATCTTCGAAGCGGACGGTGGGAAGCGCACGAAGCAACTTCTA
GATGTTGTGGAGACTTACTGGAAGCCGGTCCTCTCCGCTCTCGGACGAAA
GGCCAAGTTCGTAACCGCCATCAACAAGAAAGCGCTGTCCGGGGAGATAG
GACAGTCGAACAAGACCAACGCGACTCCTGCGGCCGGTAAACCAGTGGTC
GTCTCCACACACGCCACTCGTGTTAAATTCAATCAGGCCGTGGTAGAACA
TTTTTTAGGCTTCGTAGGGGCTCAAGAGTCCGACGAAGACGAACGTAAAT
CGGCGAGACTGCTGGCCGTTGAGTTCGCCATGCTCTGCGTAGACCGTGTG
CTCGACGACAAGAACAAGTTCAACGATTTGTACGGCGCGTTGGACGAGGA
CAGCTGGACGAGGAAGATGCTGCAGACGAACCCGACAAGCTTGCGATCAT
CGGAAGGAGAGAGCTTTTTCGACGAGGCCCGTCTCTCGGCAATGGCAAGC
CCTAAACCTGCCAGTAGCAGCAAGGGGGATGGCGCAACCAACAAGGCGGA
CGGGGGTGCAGCGGAGGAAGGGGAGTCAGTGGATGGCGGGAATGCCGGCA
GCCCAGGCGTCGGGAGACGACAACGAGGTCCAGGCGCCTCCCACCCCATC
GCCGCAGTGCCTTACGGCGTTGTTCGGATTGCTGCGAACGACCCAGGCGA
GCCCGACACTGAGAGCGGCGATTCTCAGGGATGGAATCGTCAATAGCGTC
AAGGACTTGGCGTTTGGTGAGGCGCGACTTGACATCGTTCGCATGCTTGC
TTCTTCGATCGCTGGCGGAGCAATGCGCGAAGCTGATGGCAAGAATAGGA
TGCCCGACGTGAAGGGCGCGGCGGCGCTGCTACCGACGTTTGTTTCACCC
GAGGAGCAAGCGATCTTCGAAGCGGACGGTGGGAAGCGCACGAAGCAACT
TCTAGATGTTGTGGAGACTTACTGGAAGCCGGTCCTCTCCGCTCTCGGAC
GAAAGGCCAAGTTCGTAACCGCCATCAACAAGAAAGCGCTGTCCGGGGAG
ATAGGACAGTCGAACAAGACCAACGCGACTCCTGCGGCCGGTAAACCAGT
GGTCGTCTCCACACACGCCACTCGTGTTAAATTCAATCAGGCCGTGGTAG
AACATTTTTTAGGCTTCGTAGGGGCTCAAGAGTCCGACGAAGACGAACGT
AAATCGGCGAGACTGCTGGCCGTTGAGTTCGCCATGCTCTGCGTAGACCG
TGTGCTCGACGACAAGAACAAGTTCAACGATTTGTACGGCGCGTTGGACG
AGGACAGCTGGACGAGGAAGATGCTGCAGACGAACCCGACAAGCTTGCGA
TCATCGGAAGGAGAGAGCTTTTTCGACGAGGCCCGTCTCTCGGCAATGGC
AAGCCCTAAACCTGCCAGTAGCAGCAAGGGGGATGGCGCAACCAACAAGG
CGGACGGGGGTGCAGCGGAGGAAGGGGAGTCAGTGGATGGCGGGAATGCC
GGCAGCCCAGGCGGCACTGGAACAGCGAACCAGCCGAACGTGACCATCCG
CCGTCCCGGTAGCGGGCATGCTATTCCCTTCACCTTGCCGGGACCTGTCG
TCAGCGAGCTGGGTTTGGGACGTGGCTCCAGTGTGATGGTGAAAATCTCT
CGACTTGCAGCGGCGGACGTTCCCGCCCCCGCGGGCCGCGAGGGGAGGGA
TTCTGAATCAGGGACCGGCAGTGATCGCGAGCGAGATAACGCCCAGGGCG
GTGGTGATGCTGACACTGGCGGAGGAGCCCCCGACAACGGGTACGTATGT
AGTTTGAACAATTCCCCGTCCCTATCGCCTGATCGTCGACGAGTGACTTC
TCTATCAAAGCGGCACTGGAACAGCGAACCAGCCGAACGTGACCATCCGC
CGTCCCGGTAGCGGGCATGCTATTCCCTTCACCTTGCCGGGACCTGTCGT
CAGCGAGCTGGGTTTGGGACGTGGCTCCAGTGTGATGGTGAAAATCTCTC
GACTTGCAGCGGCGGACGTTCCCGCCCCCGCGGGCCGCGAGGGGAGGGAT
TCTGAATCAGGGACCGGCAGTGATCGCGAGCGAGATAACGCCCAGGGCGG
TGGTGATGCTGACACTGGCGGAGGAGCCCCCGACAACGGGTACGTATGTA
GTTTGAACAATTCCCCGTCCCTATCGCCTGATCGTCGACGAGTGACTTCT
CTATCAAAGAGCGGCGATAGTAGCGAGAGCGTCAGCAGCGAGAGTGGTGA
TGGCGATGCGACCGGCGGCGGAGACGAGGCCAACGGGAGCGGCGATAGTA
GCGAGAGCGTCAGCAGCGAGAGTGGTGATGGCGATGCGACCGGCGGCGGA
GACGAGGCCAACGGGCGAACCGGGAAGCGGTCGAGTGAGGACTCCGAGCA
GGGGGATACCTCAAGAACTCGTCCAAGGCGAACCGGGAAGCGGTCGAGTG
AGGACTCCGAGCAGGGGGATACCTCAAGAACTCGTCCAAGTTTACAATCA
CACGCTCGTCCGTACGGCTCCAGGATCACCGCGGCTGAAGACACGCAGAA
CTTCAGTTCGGGGGGAACTGACTTCTTTACACGCAGGTTAGGGGTCGCCG
AGAACGACAGCTCGAGGCTCCTGAAAGCCCCGGTGACTGCCAACGATGTT
GATGACAACAGCCCGGATACGTTTACAATCACACGCTCGTCCGTACGGCT
CCAGGATCACCGCGGCTGAAGACACGCAGAACTTCAGTTCGGGGGGAACT
GACTTCTTTACACGCAGGTTAGGGGTCGCCGAGAACGACAGCTCGAGGCT
CCTGAAAGCCCCGGTGACTGCCAACGATGTTGATGACAACAGCCCGGATA
CG back to top
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