mRNA_E-fasciculatus_F_contig10566.446.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig10566.446.1
Unique NamemRNA_E-fasciculatus_F_contig10566.446.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig10566.446.1 vs. uniprot
Match: A0A6H5JI28_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI28_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 2.470e-10
Identity = 52/121 (42.98%), Postives = 61/121 (50.41%), Query Frame = 2 
Query: 2246 NLVGFTPLRGLPLGGMV-LPVNFAGTVVSAAA------------ASIISGEVFDHGDAVCLVDERYDSSFHRFILHSFLSFLSFHSFLFICCIIWLLVMFRTLRLAAMWAPAMAVRFWAGE 2569
            N VG+ PLRGLPLG M  L V  AG+V SAA             A + SG+  D GDA C  DER DSSF  F                ICC+  L V+FRTLR+A MWA    + + A E
Sbjct:    2 NPVGYAPLRGLPLGAMFSLVVVLAGSVASAATVGSISARTTSGNAGLRSGKACDPGDADCFGDERDDSSFLGFAC--------------ICCMFLLFVVFRTLRVATMWARVPELLYKARE 108
[Close]
BLAST of mRNA_E-fasciculatus_F_contig10566.446.1 vs. uniprot
Match: A0A6H5J5A0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J5A0_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 1.150e-7
Identity = 55/146 (37.67%), Postives = 67/146 (45.89%), Query Frame = 2 
Query: 2246 NLVGFTPLRG------LPLGGMV-LPVNFAGTVVSAAA------------ASIISGEVFDHGDAVCLVDERYDSSFHRFILHSFLSFLSFHSFLFICCIIWLLVMFRTLRLAAMWA--PAMAVRFWAGERGFMVRAGQHFQLLVVW 2620
            N V + PL G      LPLG M  L V  AG+V SA              A + SG+  D GDA CL DER DSSF  F                IC ++ L V+FRTLR+AAMW    A+ VR            G+ FQ L++W
Sbjct:    2 NPVRYAPLCGVLCHGSLPLGAMFSLVVVLAGSVASADTTGSISAQTTSGNAGLRSGKACDPGDADCLGDERDDSSFLGFAC--------------ICYMVSLFVVFRTLRVAAMWVRGTAILVRLXXXXXXXXXXXGRQFQGLIIW 133
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10566.446.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JI28_9PHAE2.470e-1042.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J5A0_9PHAE1.150e-737.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10566contigE-fasciculatus_F_contig10566:353..4811 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons4
Model size3023
Cds size492
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10566.446.1prot_E-fasciculatus_F_contig10566.446.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig10566 2487..4414 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927554.2791214-UTR-E-fasciculatus_F_contig10566:352..24861622927554.2791214-UTR-E-fasciculatus_F_contig10566:352..2486Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10566 353..2486 +
1695995592.7945848-UTR-E-fasciculatus_F_contig10566:352..24861695995592.7945848-UTR-E-fasciculatus_F_contig10566:352..2486Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10566 353..2486 +
1622927554.3590155-UTR-E-fasciculatus_F_contig10566:4414..48111622927554.3590155-UTR-E-fasciculatus_F_contig10566:4414..4811Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10566 4415..4811 +
1695995592.8360164-UTR-E-fasciculatus_F_contig10566:4414..48111695995592.8360164-UTR-E-fasciculatus_F_contig10566:4414..4811Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10566 4415..4811 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927554.2947977-CDS-E-fasciculatus_F_contig10566:2486..26261622927554.2947977-CDS-E-fasciculatus_F_contig10566:2486..2626Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10566 2487..2626 +
1695995592.8037462-CDS-E-fasciculatus_F_contig10566:2486..26261695995592.8037462-CDS-E-fasciculatus_F_contig10566:2486..2626Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10566 2487..2626 +
1622927554.3113387-CDS-E-fasciculatus_F_contig10566:3063..31431622927554.3113387-CDS-E-fasciculatus_F_contig10566:3063..3143Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10566 3064..3143 +
1695995592.811832-CDS-E-fasciculatus_F_contig10566:3063..31431695995592.811832-CDS-E-fasciculatus_F_contig10566:3063..3143Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10566 3064..3143 +
1622927554.3307748-CDS-E-fasciculatus_F_contig10566:3654..38001622927554.3307748-CDS-E-fasciculatus_F_contig10566:3654..3800Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10566 3655..3800 +
1695995592.819857-CDS-E-fasciculatus_F_contig10566:3654..38001695995592.819857-CDS-E-fasciculatus_F_contig10566:3654..3800Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10566 3655..3800 +
1622927554.348228-CDS-E-fasciculatus_F_contig10566:4288..44141622927554.348228-CDS-E-fasciculatus_F_contig10566:4288..4414Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10566 4289..4414 +
1695995592.8279183-CDS-E-fasciculatus_F_contig10566:4288..44141695995592.8279183-CDS-E-fasciculatus_F_contig10566:4288..4414Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10566 4289..4414 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig10566.446.1

>prot_E-fasciculatus_F_contig10566.446.1 ID=prot_E-fasciculatus_F_contig10566.446.1|Name=mRNA_E-fasciculatus_F_contig10566.446.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=164bp
MLLPNALLVGHRHRPPSLVAPGELVVWTRYASYSAVKNLVGFTPLRGLPL
GGMVLPVNFAGTVVSAAAASIISGEVFDHGDAVCLVDERYDSSFHRFILH
SFLSFLSFHSFLFICCIIWLLVMFRTLRLAAMWAPAMAVRFWAGERGFMV
RAGQHFQLLVVWQ*
back to top

mRNA from alignment at E-fasciculatus_F_contig10566:353..4811+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig10566.446.1 ID=mRNA_E-fasciculatus_F_contig10566.446.1|Name=mRNA_E-fasciculatus_F_contig10566.446.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=4459bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10566:353..4811+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTGCGTCGTCAACTTATGCATGGAGAGCGAAAAAATAAGAAAAAATGGCG
CGCTCACTACCGTGACGGTAGATAACAACCCCCCTTCCGCTAATCTTCAA
AGCTCGATTACTCCACGAAGACATTGTCAAATACTCGATGATGCGCATCC
AGAGGACGTCCAGAGAACGCCGCCATTTTCGGCACCACCGCTTTTGCTGG
TGTGAAGCAATCGAGGAGCTTAGTAGGTCCAGGGGGTAGGATATATTTGA
TTGGTCCAAAAGTCCCAATACTCCCTGAAGTTCGCGTTGTCTTCGGAACA
AGAAGGTCGAGATTCGGCTTCGTTCTCATCAGAGACGGGCAAAAAAACAC
TACACACCGCCGCCTCCTGCCTGCACACACCAAACAAACACCCGAGAGAT
AGCGAGGGTGTGGGGAGCAAAGGGCGTCTGTCTCCTGTTGCAAAGATCTC
TGCAACATCAAGGAGGAAGGGGAGTGCGGTTATTGCTGTGACGACGACGG
GAGGGGCGCGAGGATTGCAGAGAGAGCTAAGGTATGCATGCCTATGGCCA
GCCGGTCGGTTGAAGGGTTCAGCGATCGATTGAAGGGTTCAGCGGGAGTT
TGTGACACAGAAACGACCCGGGCAACATCGGAGAGGGGGGGCAGGGGCAA
CGAGAAGAAGAGCACTCGCAACCCGTCCGAGCCGGCCGCCTTCCCCCTGG
GTGGCTCTCGCTCTGTTTACATACAGTAGTCTAGGCTGTGCTTTGACTGT
TTTTTGTCAAGGAGGGCGCGTCGGGCGAGCCCGTCACTCACTCCTGCTGG
CTCTCTGCTCTCTCTCTCTCTCCGCCAGGCCGCGGAGAGCGATCGTGCCC
CAAGCACGGCTCGGCTCTTTCAGCCGTGGGGCGTAATGTCCCGAATACTA
CCTACTAAGCGAGTGCTTACGGTTATGTAGATGCCCTTCACGACGGCAAG
AGGGCCGCCTTTCATGTATAGTCTAGTGTAGGACGAGGCGGTGCATTTTG
ATTTTCTCGTTGGGACACGTACGTCTGTCTCCGATCAAACCGGAGACAGA
GACGGAGATGGTTTGGACGTTGGATGGGCGGCGGGCGGGGGCAGCACACG
AGCCTGTGTCGACGGCGGCTCGTGCTGCTCGTCTGCAGAGATATGACAGC
GCGAGGCAAGAGAGAAGTCGCCACAAGGGGGGTCTAGTTGTACCAGAATC
AGTCAAGTCTCTCCAATACGAATCAACAACAGAGTACGAACGGCGGTGGA
AATGGACGGGACACATTCCGCTGCTTTAGACTAGACTGTTAGGTGTGCGT
ATAGGTATGCCATCCGAATGCACCTCCTCTTTTTGCCAGATTATCTACGA
TTCGAAGGATTTTCCTCTGTTCCAGCCAAGCAAAAATCACCCCCCCTTGG
TGTTAGGACACCGCACCCTTGCGTGGTACCACCGGGTATCACAGGGTGGG
TGTAAAGAACAGGCCTAGGATTCAACCGTGCGTTGTGAGGCGCACGATCC
TTTGCCCCACATTCGCGTGGAAATGGTTTCATAGCACTTGGGCATTGAGG
CGCAACAACAAAAGCGGTCCAGAAACACCGATTTTCAACTTGTGGAGACG
GAGCAGTCTAGGAAGAAGGGCGTTGACGACAGTCTGTGGAGTGGCCATCA
CCCATGGGGTTCTCCCTCTGACACACTGGCGATTTGGTCGATCATCGACA
AGTGGAAGCAGGAGGCCTTAGCCGTTCTCTTTCGTGGGGGTGTACGAGAT
CATCCCGGCAGAGGGTGGTTGACCTCCGGTACACGCGTAAGAAGGTTGTT
TAAAATTCAATCTGCGTAAGGGACGTAGAGTGGGCGTCATCGCAGGGCCG
ACCGCACCGCAGGGAAACTGCCCGCACGAGGTTCTTCGGGTTCATCGTAG
AAAAGGACCCAACCATTCTCGTTGCACTTCCTATTTCCTACTTCCTTCAG
CGGCGCTGGCAGCCGTGTTGCAGGGGTGTGATGCTGAAGGACGTCCGCGC
GCTTTGCGTCAGAAGTCCGTTTTTCCCATCTAAGTAAATTACCGTAAAGT
TTGGGGGTGCCCGATGATGAGTCTTATGTCTTATGTCTCCATTCTCTTTT
CGTTTCGATTGCCCTTGAAACCGGCCATCCATCCATGCTGCTGCCGAACG
CTCTACTCGTAGGGCACCGCCATCGCCCCCCATCATTGGTTGCCCCAGGT
GAGCTTGTTGTGTGGACACGGTACGCTTCGTACTCTGCGGTCAAGAACCT
TGTGGGTTTCACGCCTCTTCGCGGGTAAGCAAGACGACAATTTTTGTGAT
CTACTATGCACACGGTAGCGGTAAGCCGACGCAGGTCGACCACTTTCCAT
CATCAAAACGCACCTTTCTTTCCATCATCCGGCTGCGGATTTGAGTCCAA
CGTTATTAGCCGCGCAAGTAGTGGCATCACATGTGCATTTCCCGCCACCA
GCACACCAGCGCAGGCAGTGGCATTATACTGTACATGTGTATGTCTCACC
ACCAGCGGCCGGGGCCATGAGCATGGATCCCTAGCTCATCGCTCGGCGGG
CAAGCATAGCGCTGGTTTGTTTTACGTTTTGGTGCTTGTGTTTCCCAAGC
GGCGTAGTCTCTACGTGAGAGAAGACGTGGGTACCCCAGTGTACATACAT
CATGCTGTAGTTTCAACATTTCCCTCCGCCGTGGCCCGCGTGTGCTTTTC
TGTCACGGCAGCCTGCCCTTAGGCGGCATGGTTTTGCCGGTGAACTTTGC
GGGAACGGTTGTTTCTGCTGCCGCAGCCAGCATTATCTCCGGTAAGCCCC
ACGACGATAAACCTCTTGAAGTACGATGACCGTTTGTGTTGGCCGGAGGG
TGGGTGCCCTGTACCCTGCTTCTGAGTTTGCCCTTGTACGGTCGGGGGGT
GAATGAAGACTTCTGACAGGGTAGCCGAATAGATCTATATATCTTCGTGT
CGTGTTCGTCTTGACGCTCAGCACCCTGTCGTGGCGAAAAAGGCCGACCG
TTCAGGCTAGACGCATGTATGTGTTGAGCGTACGTACAGCTCTCCGCCAC
TGTCCGCCCTTTGGGCGAGGAGGGGCGTTGTTTTCGGGTCCCCAGTGCTA
TTGCGGGCACGCACCACGCTTCCGGCTGGGTTGTGAACGTTGACACGCAA
TACAGTTCGACAAAACAGTAATGCAGCGCGCCTCGCATGGTACGCCCCCC
GGGCTCTGATGACAACATGTCAGTGGATGGAAAACCGTTCGTTGCGAGTG
AGATGATGCCCATGTGACGTGATGAACGCGATTACGATGATGACTGCACC
AGGCGAGGTGTTCGATCACGGGGACGCCGTCTGCCTCGTAGACGAACGAT
ACGACTCCAGTTTCCACCGCTTCATCCTCCACAGCTTCCTCAGCTTCCTC
AGCTTCCACAGCTTCCTCTTCATCTGTTGCATCATATGGCTGCTTGTGGT
GAGAAACAGCGGTCGGTGTGGCGTCCTTGTGCGACCCCAATCTTTTTCAC
GGGAACTTTTCCTAACGATGTTTTGTCGGAGACTTGTCCAAATGTTGTTT
AGTCTTATTGCCACGCTCACCAGGCAGAACCCCTGTCTCAGCGCTTTGCC
CGCGTGAGGTTTTCTTTCGATATCCCGAAAGATATAACGGCCACATCATC
GTCCAAGAAATGTTGTCGCACCGACCCAAGAAAAGAAATTGTAGATCCAA
CGATGTTCACGGTACGTTTTTATGTTCATCCGGGAACGTCAAGGGGCGAT
GCGATGCCGTCACGTTTTGAGATAAAAAAGCAAACTGCACTACAACGTAC
GTACCGTGACCATGTAAAAAATATATTTATCGCCCTGCGGTAAGTGCGGT
TCTATACGGTGAACACCCCGAAAATAGTATTTTCCCGCCCCGTTCTCCTC
GTGCCCGGTCGTGCTGTTCGTCGGCTCTCGCGACAGATGTTTCGCACCTT
GCGGCTCGCCGCGATGTGGGCACCTGCAATGGCCGTCCGCTTCTGGGCTG
GGGAAAGGGGATTCATGGTCCGCGCAGGACAGCACTTTCAGTTGTTGGTG
GTCTGGCAATAACTTTCAACCCACCATATTTCTCGAGCTAGGCGGGACTC
CAACCGTGCTAGTGATCCGCACATCGAGGCGGGCAACACAAGTTCGAACG
ACAGTTTTGACAGAAACGAGGCACACTCGGATTGATTTATTCGAAGTTGG
TTTCTTGAGCAAGCCTTGATTTTGAAGACCGGAACATGTGGGATCTTGAA
AAATATGTGGAATGTCTTGCTCAGGTTCAATTTGTTGTTGAATCGAAGAA
AACTTGAGTCTCTCGATTGTGTGAGGGGGTCGCGTGCCGCCCTCCATTGG
AAAATCGTGCTGGTGGTGTTTATCGCAGGGTAACGAGAATAGAACGCCCT
GCCAGATTCGGTTTCAGGGCCATTCCTTTTCCGTCGATGCTCGATACATT
TCTCATTGA
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10566:353..4811+

>mRNA_E-fasciculatus_F_contig10566.446.1 ID=mRNA_E-fasciculatus_F_contig10566.446.1|Name=mRNA_E-fasciculatus_F_contig10566.446.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=984bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10566:353..4811+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCTGCTGCCGAACGCTCTACTCGTAGGGCACCGCCATCGCCCCCCATC
ATTGGTTGCCCCAGGTGAGCTTGTTGTGTGGACACGGTACGCTTCGTACT
CTGCGGTCAAGAACCTTGTGGGTTTCACGCCTCTTCGCGGATGCTGCTGC
CGAACGCTCTACTCGTAGGGCACCGCCATCGCCCCCCATCATTGGTTGCC
CCAGGTGAGCTTGTTGTGTGGACACGGTACGCTTCGTACTCTGCGGTCAA
GAACCTTGTGGGTTTCACGCCTCTTCGCGGCCTGCCCTTAGGCGGCATGG
TTTTGCCGGTGAACTTTGCGGGAACGGTTGTTTCTGCTGCCGCAGCCAGC
ATTATCTCCGCCTGCCCTTAGGCGGCATGGTTTTGCCGGTGAACTTTGCG
GGAACGGTTGTTTCTGCTGCCGCAGCCAGCATTATCTCCGGCGAGGTGTT
CGATCACGGGGACGCCGTCTGCCTCGTAGACGAACGATACGACTCCAGTT
TCCACCGCTTCATCCTCCACAGCTTCCTCAGCTTCCTCAGCTTCCACAGC
TTCCTCTTCATCTGTTGCATCATATGGCTGCTTGTGGCGAGGTGTTCGAT
CACGGGGACGCCGTCTGCCTCGTAGACGAACGATACGACTCCAGTTTCCA
CCGCTTCATCCTCCACAGCTTCCTCAGCTTCCTCAGCTTCCACAGCTTCC
TCTTCATCTGTTGCATCATATGGCTGCTTGTGATGTTTCGCACCTTGCGG
CTCGCCGCGATGTGGGCACCTGCAATGGCCGTCCGCTTCTGGGCTGGGGA
AAGGGGATTCATGGTCCGCGCAGGACAGCACTTTCAGTTGTTGGTGGTCT
GGCAATAAATGTTTCGCACCTTGCGGCTCGCCGCGATGTGGGCACCTGCA
ATGGCCGTCCGCTTCTGGGCTGGGGAAAGGGGATTCATGGTCCGCGCAGG
ACAGCACTTTCAGTTGTTGGTGGTCTGGCAATAA
back to top