mRNA_E-fasciculatus_F_contig10551.438.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig10551.438.1
Unique NamemRNA_E-fasciculatus_F_contig10551.438.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig10551.438.1 vs. uniprot
Match: D8LRW0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRW0_ECTSI)

HSP 1 Score: 211 bits (537), Expect = 6.820e-64
Identity = 114/128 (89.06%), Postives = 117/128 (91.41%), Query Frame = 1 
Query:    1 RSLPSEMVWSLSGSKNITGTLQTFCVQEVDDADLLVAAIGMDEDDLRSVLADIKGQPCGLERLGQGLRPVDGSVGDGQQXXXXXXXXXXGGADKGRERLKKLYKITEEELAVNSIEDCVVMRMAVKDH 384
            RSLPSEMVWSLSGSKNITGTLQTFCVQEVDDADLLVAAIG+DEDDLRSVLADIKGQPCGLERLG+GLRPVDG VGDGQQ XXX      G A K RERLKKLYKITEEELAVNS+EDCVVMRMAVKDH
Sbjct:   69 RSLPSEMVWSLSGSKNITGTLQTFCVQEVDDADLLVAAIGIDEDDLRSVLADIKGQPCGLERLGEGLRPVDGGVGDGQQQXXXQRWQG-GDASKWRERLKKLYKITEEELAVNSLEDCVVMRMAVKDH 195
[Close]
BLAST of mRNA_E-fasciculatus_F_contig10551.438.1 vs. uniprot
Match: M4BD14_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BD14_HYAAE)

HSP 1 Score: 57.8 bits (138), Expect = 2.550e-6
Identity = 40/126 (31.75%), Postives = 63/126 (50.00%), Query Frame = 1 
Query:    1 RSLPSEMVWSLSGSKNITGTLQTFCVQEVDDADLLVAAIGMDEDDLRSVLADIKGQPCGLERLGQGLRPVDGSVGDGQQXXXXXXXXXXGGADKGRERLKKLYKITEEELAVNSIEDCVVMRMAVK 378
            RSL SE+V+++SGS+N++ + + F V E D   L+V  I  DE+ L+ V A ++G     E LG  L                         D     +KK+YK++E+EL  +++ D V  R+A K
Sbjct:   74 RSLHSELVFNMSGSRNVSESFKRFGVNE-DTTSLVVCVIDADEETLKQVEALVQGVQVPFEELGTHL------------------------TDDNVNLIKKVYKVSEQELTQSTLTDAVTCRIATK 174
[Close]
BLAST of mRNA_E-fasciculatus_F_contig10551.438.1 vs. uniprot
Match: A7SA06_NEMVE (Predicted protein (Fragment) n=1 Tax=Nematostella vectensis TaxID=45351 RepID=A7SA06_NEMVE)

HSP 1 Score: 55.5 bits (132), Expect = 6.040e-6
Identity = 40/127 (31.50%), Postives = 64/127 (50.39%), Query Frame = 1 
Query:    1 RSLPSEMVWSLSGSKNITGTLQTFCVQEVDDADLLVAAIGMDEDDLRSVLADIKGQPCGLERLGQGLRPVDGSVGDGQQXXXXXXXXXXGGADKGRERLKKLYKITEEELAVNSIEDCVVMRMAVKD 381
            ++L SE++++LS + NI+ + + F + + DD+ +L+A I  D   + SV A ++G    +  L                            AD  RE +KK+YK+TE ELA  S+ D V+ RMA KD
Sbjct:   27 KTLYSEIIFNLSPTNNISDSFRKFGLADGDDS-VLIATISSDAQKMSSVTAFVQGNRVPVNTLSTS-------------------------AD--REFIKKIYKVTESELACGSLADAVIFRMATKD 125
[Close]
BLAST of mRNA_E-fasciculatus_F_contig10551.438.1 vs. uniprot
Match: UPI001390149F (EKC/KEOPS complex subunit TPRKB n=1 Tax=Nematostella vectensis TaxID=45351 RepID=UPI001390149F)

HSP 1 Score: 55.5 bits (132), Expect = 1.570e-5
Identity = 40/127 (31.50%), Postives = 64/127 (50.39%), Query Frame = 1 
Query:    1 RSLPSEMVWSLSGSKNITGTLQTFCVQEVDDADLLVAAIGMDEDDLRSVLADIKGQPCGLERLGQGLRPVDGSVGDGQQXXXXXXXXXXGGADKGRERLKKLYKITEEELAVNSIEDCVVMRMAVKD 381
            ++L SE++++LS + NI+ + + F + + DD+ +L+A I  D   + SV A ++G    +  L                            AD  RE +KK+YK+TE ELA  S+ D V+ RMA KD
Sbjct:   77 KTLYSEIIFNLSPTNNISDSFRKFGLADGDDS-VLIATISSDAQKMSSVTAFVQGNRVPVNTLSTS-------------------------AD--REFIKKIYKVTESELACGSLADAVIFRMATKD 175
[Close]
BLAST of mRNA_E-fasciculatus_F_contig10551.438.1 vs. uniprot
Match: A0A6P7VJI3_IXOSC (EKC/KEOPS complex subunit TPRKB n=5 Tax=Ixodes TaxID=6944 RepID=A0A6P7VJI3_IXOSC)

HSP 1 Score: 54.3 bits (129), Expect = 3.670e-5
Identity = 39/127 (30.71%), Postives = 63/127 (49.61%), Query Frame = 1 
Query:    1 RSLPSEMVWSLSGSKNITGTLQTFCVQEVDDADLLVAAIGMDEDDLRSVLADIKGQPCGLERLGQGLRPVDGSVGDGQQXXXXXXXXXXGGADKGRERLKKLYKITEEELAVNSIEDCVVMRMAVKD 381
            RS+ SE+++ L+ +KNI+ +L+     E D + ++V     D+     +L  ++G+   LE+L     P                           + L+KL+KIT++ELAV S+ D VV RMAVKD
Sbjct:   72 RSILSEILYQLAPTKNISDSLKQLGAHENDTSVVVVLVDDPDDKHRAKLLESVRGERAPLEKLSALSDP---------------------------QALRKLFKITDKELAVGSLLDAVVTRMAVKD 171
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10551.438.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LRW0_ECTSI6.820e-6489.06Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
M4BD14_HYAAE2.550e-631.75Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
A7SA06_NEMVE6.040e-631.50Predicted protein (Fragment) n=1 Tax=Nematostella ... [more]
UPI001390149F1.570e-531.50EKC/KEOPS complex subunit TPRKB n=1 Tax=Nematostel... [more]
A0A6P7VJI3_IXOSC3.670e-530.71EKC/KEOPS complex subunit TPRKB n=5 Tax=Ixodes Tax... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10551contigE-fasciculatus_F_contig10551:2012..4457 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score203.4
Seed ortholog evalue6.2e-50
Seed eggNOG ortholog2880.D8LRW0
Preferred nameTPRKB
KEGG rclassRC00141
KEGG koko:K08658,ko:K08869,ko:K15901
KEGG ReactionR09845
KEGG Pathwayko00900,ko01130,map00900,map01130
GOsGO:0000408,GO:0000722,GO:0000723,GO:0002949,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006310,GO:0006312,GO:0006355,GO:0006357,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0006996,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016043,GO:0016070,GO:0019219,GO:0019222,GO:0019899,GO:0019900,GO:0019901,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032200,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050793,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051276,GO:0060249,GO:0060255,GO:0065007,GO:0065008,GO:0070525,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090342,GO:1901360,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141
EggNOG free text desc.tRNA processing
EggNOG OGsKOG4066@1,KOG4066@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko01002,ko03016
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionCGI121/TPRKB
Ec32 orthologEc-08_002650.3
Exons2
Model size1120
Cds size369
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10551.438.1prot_E-fasciculatus_F_contig10551.438.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig10551 2745..4439 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927553.160785-UTR-E-fasciculatus_F_contig10551:2011..27441622927553.160785-UTR-E-fasciculatus_F_contig10551:2011..2744Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10551 2012..2744 -
1695995592.2328172-UTR-E-fasciculatus_F_contig10551:2011..27441695995592.2328172-UTR-E-fasciculatus_F_contig10551:2011..2744Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10551 2012..2744 -
1622927553.209687-UTR-E-fasciculatus_F_contig10551:4439..44571622927553.209687-UTR-E-fasciculatus_F_contig10551:4439..4457Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10551 4440..4457 -
1695995592.264815-UTR-E-fasciculatus_F_contig10551:4439..44571695995592.264815-UTR-E-fasciculatus_F_contig10551:4439..4457Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10551 4440..4457 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927553.1780255-CDS-E-fasciculatus_F_contig10551:2744..30501622927553.1780255-CDS-E-fasciculatus_F_contig10551:2744..3050Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10551 2745..3050 -
1695995592.2458317-CDS-E-fasciculatus_F_contig10551:2744..30501695995592.2458317-CDS-E-fasciculatus_F_contig10551:2744..3050Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10551 2745..3050 -
1622927553.1968038-CDS-E-fasciculatus_F_contig10551:4376..44391622927553.1968038-CDS-E-fasciculatus_F_contig10551:4376..4439Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10551 4377..4439 -
1695995592.2552547-CDS-E-fasciculatus_F_contig10551:4376..44391695995592.2552547-CDS-E-fasciculatus_F_contig10551:4376..4439Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10551 4377..4439 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig10551.438.1

>prot_E-fasciculatus_F_contig10551.438.1 ID=prot_E-fasciculatus_F_contig10551.438.1|Name=mRNA_E-fasciculatus_F_contig10551.438.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=123bp
MVWSLSGSKNITGTLQTFCVQEVDDADLLVAAIGMDEDDLRSVLADIKGQ
PCGLERLGQGLRPVDGSVGDGQQQQQQQRERQGGGADKGRERLKKLYKIT
EEELAVNSIEDCVVMRMAVKDH*
back to top

mRNA from alignment at E-fasciculatus_F_contig10551:2012..4457-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig10551.438.1 ID=mRNA_E-fasciculatus_F_contig10551.438.1|Name=mRNA_E-fasciculatus_F_contig10551.438.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2446bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10551:2012..4457- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGATCACTGCCGTCGGAGATGGTGTGGTCGCTCTCCGGCTCCAAGAACAT
CACGGGTACTCTACAGACGTTTTGTGTACAGGTGAGTGTTCTTCGCTTCT
TGGGGAAGAAAAGTGTGTCGATGGTGGTTTGGCGGTGGTAATCAAGTTTC
TCAACAGATAGGTGCCCTGAGGAAAGCTCAGGATTCACAAGCGGGTTTTC
TATACCCGCGAAGGGTAGACCACGAAGGAAAGGGCTTAGTGGTCATCATG
AGGTGGAAGAGCAGCATTTTGTGAAGGAAGATCTATCTTGCTCTATCCCT
TTGTCCACGATAGCCCTTTCTTTGTGTCTACATTGTCAAGTCGTCGACGA
AGGCGATCAACTTACAAGGTAGACCTGTTCATGATCATGAGTCGTGGGCG
AAAAATGAGCACGACTCGTGGCGCACAGCTTGTTTGAATGGCAGAGTGGG
TGGAATTGGTAGGAAGAGAGACGACGCTCAGCGTTTCGATTATGAGAAAG
TTTGATTCCGCTCTTGTCGACTGCTTCCCCCGAGCGTCTTGGTTGATCAC
ACTCCAAACACAAGCTGACGGACTCGTTGTTGCCAGTGTAGATGGTGATA
CAAGGAGGTGTGTGTGGGGGGCAATCTCCTGCGTAGTGCTGGCAAACGCA
GAGAAACGACCGTGCGGCCGACCGAGCAAGCTATCTAAACTGCTGTAGAC
ACGGCTTGGCTCGAAACCAAGTACGTATTGGGCGTAGCTTATCTATACGT
CATAAAGAAGGCGCTAGCACAGATGCACGACTTATCGATGCGGGTAGCAC
ACAATTTGTTGCAGGAATGGTTTGTTGAAGGCAACCACCCATCCATCACG
AAAGGCAACCACCCATCCAGTACGAATCTCCTTCTTTGGGTCTACTCTCA
CGTGGCAGGTAATGGTTATCGCAGGGTCCAGCGGTGTGCAAAAGTAGAAA
CGGTGCTTTTCGACACCCACCACAAACAAGTCCACACCAATTGAGGGATG
ATTGAACCTGTGACTAGATTCCGCTCGTGAGCAGCCTTGTTTATCTCGCG
CACTCTGAATTCGCAAGACTTGGATTTCGTTTTTTTTGCCTGGACATATG
AAGGCGGGTTTGATCGTGCACCACCCGCCTGTTTCGTGAACCCTAGCGGA
GCTGGATACGGCGACGACCCGCTCGACGGCCGTATCCAGGCACAGAAACA
TAACACAGACCGGAATCAAGAAGAGAGGATGCTCGTGGTCTGGCGTCTCA
ACGCCGCCCAGTACCGGTTCGAACCAACTAGTTCACCCTCTGAATATTCA
GAACCACCGTTCTACATGAATCTCCTTTGGGACTATGCGTATGTACCTGT
GCATGCATTTGCGTAATTTTTCATGGACCAATGGCTCGTTTTTCCGTCGG
CACACAGGAAGTGGACGATGCAGACCTCTTGGTGGCCGCTATTGGCATGG
ACGAGGACGATCTCAGATCAGTTCTGGCGGACATCAAGGGACAGCCTTGC
GGACTGGAAAGGTTGGGGCAGGGGCTTCGCCCGGTGGATGGGAGTGTCGG
CGATGGGCAGCAGCAGCAACAGCAACAACGGGAGCGGCAGGGGGGGGGGG
CTGACAAAGGGCGGGAGCGATTGAAGAAGTTGTATAAGATTACGGAGGAA
GAGCTGGCAGTGAATAGCATAGAAGACTGTGTTGTTATGCGCATGGCAGT
CAAAGACCACTAATTCTCGTGGATGGTTGCGTCAGACAGACTGTTGTAGC
AGCAACAGCGGTGTTGGGTGGTGGTAAGAGGCGAGTTATCTCGTCGTATA
CTCTCGTTAGTCGGGGGAAGGGGGGTCATACGTTTTGCGCAAATGTGAAT
GTTACACAGATCACCGAGGCTGTGGCAAAACCCGGTTGAGTGTGAAGATG
GCATCTTTGTAACACCGCGTAGGGCTTTATCGCGCCCACCCGCCTTAGTA
GCGTGCCAAGGTCCATTGACGTAGTCAGAGAGCTGTGTGCAGTGGCGAAC
CGAACCGATTTGGCTACCAGGTAGACGGTATTGCCTGATGCTCGGAGAAG
ACGGTGTTTCGGCGGTGCAAAGGAAGGATAATTTTCACCACGTACCTCGA
GATGATGCTTGCGCTGACGGGCTACCCTTCATGGCGGCAGCATTTCGCGG
CACAAGCATAAGCAGTCGTGCAGTGTGTACCAGGTATCTGGGAGTTTATT
GCCGGTGGCGCCTGGACAAAAAAAAAAAGTGCGTTATCGCCCTACACGTG
CACACCGCCTACAAGTAGAGTCGTTACTGCAACAACTCTTGGGATGCAAG
CGACGTGGCGTTATGCACCAAGAAGAGCTTTTAAGATTTTATGGGCAGAG
CAGACGTCAGGCCGAGTCTTACGGTCGGATTTTTTCCCGATTGGATTTGG
GGGGGGGGTCCTTTTCTTAGCCAAAAAATCCAATCGAGCGTCTTAC
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10551:2012..4457-

>mRNA_E-fasciculatus_F_contig10551.438.1 ID=mRNA_E-fasciculatus_F_contig10551.438.1|Name=mRNA_E-fasciculatus_F_contig10551.438.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=738bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10551:2012..4457- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGTGTGGTCGCTCTCCGGCTCCAAGAACATCACGGGTACTCTACAGAC
GTTTTGTGTACAGATGGTGTGGTCGCTCTCCGGCTCCAAGAACATCACGG
GTACTCTACAGACGTTTTGTGTACAGGAAGTGGACGATGCAGACCTCTTG
GTGGCCGCTATTGGCATGGACGAGGACGATCTCAGATCAGTTCTGGCGGA
CATCAAGGGACAGCCTTGCGGACTGGAAAGGTTGGGGCAGGGGCTTCGCC
CGGTGGATGGGAGTGTCGGCGATGGGCAGCAGCAGCAACAGCAACAACGG
GAGCGGCAGGGGGGGGGGGCTGACAAAGGGCGGGAGCGATTGAAGAAGTT
GTATAAGATTACGGAGGAAGAGCTGGCAGTGAATAGCATAGAAGACTGTG
TTGTTATGCGCATGGCAGTCAAAGACCACTAAGAAGTGGACGATGCAGAC
CTCTTGGTGGCCGCTATTGGCATGGACGAGGACGATCTCAGATCAGTTCT
GGCGGACATCAAGGGACAGCCTTGCGGACTGGAAAGGTTGGGGCAGGGGC
TTCGCCCGGTGGATGGGAGTGTCGGCGATGGGCAGCAGCAGCAACAGCAA
CAACGGGAGCGGCAGGGGGGGGGGGCTGACAAAGGGCGGGAGCGATTGAA
GAAGTTGTATAAGATTACGGAGGAAGAGCTGGCAGTGAATAGCATAGAAG
ACTGTGTTGTTATGCGCATGGCAGTCAAAGACCACTAA
back to top