mRNA_E-fasciculatus_F_contig1053.429.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1053.429.1
Unique NamemRNA_E-fasciculatus_F_contig1053.429.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig1053.429.1 vs. uniprot
Match: D7G585_ECTSI (MCU domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G585_ECTSI)

HSP 1 Score: 484 bits (1246), Expect = 2.480e-160
Identity = 259/315 (82.22%), Postives = 273/315 (86.67%), Query Frame = 3
Query:  438 AQAGKDRCSRARKTARREIAAADSQLTSLARRAEKLQRTLEDERASRQSAEFKHQRARSTTVRISRYLDSILNVNQELVAAGTPSSVTPTARQPVPRAPGELQRKPSIRGSNATPRLNPALEGDGIDIRAAVKEAFFVGRAGGDPVPSLTALYERLGFCAMQGEDGHHGGTPSLPTSPSRARVGNTVEAHRFRDVHDGEDYGGHSVVKPTVVGGFFAEDDTEVLESSRRQASGHQLDDGGSRPANGGRHHGSGNAFVGGGVTTKGYSFANSPLARPTSAAERSPEVVKRLEAXXXXXXXXXXXXXXWYKDVVHRA 1382
            AQA KDRCSRARKTARRE AAADSQLTSLARR EKLQRTL+DERASRQSAE KH RA+STT+RISRYLDSILNVNQELVAAGT SS+TPTA QPVPRA GELQRK SIR S ATPR NPALE DGIDIRAAVKEA+ VGR GGDPVPSLTALYER+GF AMQGEDGHHGGTPSLPTSP RARVGNT EA+RFRDV DGEDYG   +V+PT VGGFFAEDD EVLESSRRQAS HQ+DDGGSR ANGG+HHG+GNAFVGGGVT KGYSFANSPL RPTSAAERSPEV+KRLEA              WYKDVVHR+
Sbjct:    6 AQARKDRCSRARKTARRETAAADSQLTSLARRLEKLQRTLDDERASRQSAELKHHRAKSTTIRISRYLDSILNVNQELVAAGTSSSLTPTAGQPVPRALGELQRKQSIRDSYATPRRNPALEDDGIDIRAAVKEAYCVGRTGGDPVPSLTALYERIGFSAMQGEDGHHGGTPSLPTSPRRARVGNTAEAYRFRDVDDGEDYGRQRLVEPTAVGGFFAEDDAEVLESSRRQASAHQVDDGGSRSANGGKHHGTGNAFVGGGVTAKGYSFANSPLVRPTSAAERSPEVMKRLEALASQLERERSDVEQWYKDVVHRS 320          
BLAST of mRNA_E-fasciculatus_F_contig1053.429.1 vs. uniprot
Match: A0A6H5KP00_9PHAE (MCU domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP00_9PHAE)

HSP 1 Score: 368 bits (944), Expect = 1.450e-114
Identity = 198/281 (70.46%), Postives = 209/281 (74.38%), Query Frame = 3
Query:  537 EKLQRTLEDERASRQSAEFKHQRARSTTVRISRYLDSILNVNQELVAAGTPSSVTPTARQPVPRAPGELQRKPSIRGSNATPRLNPALEGDGIDIRAAVKEAFFVGRAGGDPVPSLTALYERLGFCAMQGEDGHHGGTPSLPTSPSRARVGNTVEAHRFRDVHDGEDYGGHSVVKPTVVGGFFAEDDTEVLESSRRQASGHQLDDGGSRPANGGRHHGSGNAFVGGGVTTKGYSFANSPLARPTSAAERSPEVVKRLEAXXXXXXXXXXXXXXWYKDVVHR 1379
            +KLQRTL DER+SRQS EFKH RA+STT+RI RYLDSILNVNQELVAAGTPSS+TPTARQPVPRA GELQRK SIR S ATPR N ALEGDGIDIRAAV EA  VGR GGDPVPSL ALYER+GF A+QGED HHGG PSLPTSP RARVGN  EA+R R VHDGEDYG   +V+PT  GG                        GGSRPANGG+HHG GNAFVGG V  KGYSFANSPL RPTSAAERSPEV KRLEA              WYKDVVHR
Sbjct:  101 QKLQRTLNDERSSRQSTEFKHHRAKSTTIRIGRYLDSILNVNQELVAAGTPSSLTPTARQPVPRALGELQRKQSIRDSYATPRQNSALEGDGIDIRAAVNEALGVGRTGGDPVPSLAALYERIGFSAIQGEDRHHGGAPSLPTSPRRARVGNAAEAYRSRYVHDGEDYGRQRLVEPTAAGGXXXXXXXXXXXXXXXXXXXXXXXXGGSRPANGGKHHGIGNAFVGGAVAAKGYSFANSPLVRPTSAAERSPEVAKRLEALASQLERERSDVEQWYKDVVHR 381          
BLAST of mRNA_E-fasciculatus_F_contig1053.429.1 vs. uniprot
Match: A0A7R9YA16_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YA16_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 8.020e-13
Identity = 65/212 (30.66%), Postives = 116/212 (54.72%), Query Frame = 3
Query:   39 MDEIQSSRAVLAALKGLQDKVRRLENERTQAVEEVKTFKGELMQRREDFKHAQELQNLTIQEENAASRLSYEKLLAEKRLVDNSLGATEEVKRELQKACETVRDRGHDAHVAQLAAEAKASILERRVNECEQMAQAGKDRCSRARKTARREIAAADSQLTSLARRAEKLQRTLEDERASRQSAEFKHQRARSTTVRISRYLDSILNVNQELV 674
            M +   SRAVL+AL+ LQDK++RLE ER++A++EV   K +L +     K ++EL+ LT  E+  ASRL+ E++ AEK++V+  L   EE K  L+K  + +R    ++ +A+  A+   S+++  V E E      K + + A +   +E    D +   L    +K++  L +E+  R  A  + +R       +  +L  ++ +N++LV
Sbjct:  222 MSDSSGSRAVLSALRALQDKIKRLEGERSKALDEVNALKQQLEEAEASAKRSRELEKLTNSEQVHASRLANERVTAEKKVVEMRLSKAEEHKASLRKEIDALRKAASESEIARRTADGNLSVVQGHVRELEGELDDMKAQLAVAHEELAKERDERDQREIELGVVIQKIEEQLREEKTMRCEAVTEKER-------LDEFLKGVVAINEDLV 426          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1053.429.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G585_ECTSI2.480e-16082.22MCU domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KP00_9PHAE1.450e-11470.46MCU domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7R9YA16_9STRA8.020e-1330.66Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1053contigE-fasciculatus_F_contig1053:16480..20411 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score486.1
Seed ortholog evalue2e-134
Seed eggNOG ortholog2880.D7G585
Preferred nameCCDC109B
KEGG rclassRC00209,RC02895
KEGG koko:K06125,ko:K14831,ko:K20858
KEGG TC1.A.77.1
KEGG ReactionR05000,R05616,R07273
KEGG Pathwayko00130,ko01100,ko01110,ko04020,ko04218,ko04621,map00130,map01100,map01110,map04020,map04218,map04621
KEGG ModuleM00128
GOsGO:0002009,GO:0002791,GO:0002793,GO:0003008,GO:0003674,GO:0005215,GO:0005216,GO:0005246,GO:0005261,GO:0005262,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0006839,GO:0006851,GO:0006873,GO:0006874,GO:0006875,GO:0006996,GO:0007010,GO:0007015,GO:0007154,GO:0007165,GO:0007275,GO:0007369,GO:0007610,GO:0007611,GO:0007613,GO:0007615,GO:0008016,GO:0008150,GO:0008200,GO:0008324,GO:0009653,GO:0009790,GO:0009792,GO:0009888,GO:0009889,GO:0009987,GO:0010646,GO:0010647,GO:0010817,GO:0015075,GO:0015085,GO:0015267,GO:0015291,GO:0015292,GO:0015318,GO:0016020,GO:0016021,GO:0016043,GO:0016247,GO:0016248,GO:0019222,GO:0019722,GO:0019725,GO:0019855,GO:0019866,GO:0019932,GO:0022607,GO:0022803,GO:0022804,GO:0022838,GO:0022857,GO:0022890,GO:0023051,GO:0023052,GO:0023056,GO:0030001,GO:0030003,GO:0030029,GO:0030036,GO:0031090,GO:0031224,GO:0031300,GO:0031301,GO:0031304,GO:0031305,GO:0031323,GO:0031966,GO:0031967,GO:0031975,GO:0032024,GO:0032501,GO:0032502,GO:0032592,GO:0032879,GO:0032880,GO:0032991,GO:0033500,GO:0034220,GO:0034702,GO:0034703,GO:0034704,GO:0035556,GO:0036444,GO:0042592,GO:0042593,GO:0042802,GO:0043009,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044057,GO:0044085,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0046873,GO:0046883,GO:0046887,GO:0048518,GO:0048522,GO:0048583,GO:0048598,GO:0048729,GO:0048856,GO:0048878,GO:0050708,GO:0050714,GO:0050789,GO:0050794,GO:0050796,GO:0050801,GO:0050877,GO:0050890,GO:0050896,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051179,GO:0051222,GO:0051223,GO:0051234,GO:0051239,GO:0051259,GO:0051260,GO:0051560,GO:0051561,GO:0051716,GO:0055065,GO:0055074,GO:0055080,GO:0055082,GO:0055085,GO:0060026,GO:0060027,GO:0060401,GO:0060429,GO:0061041,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070201,GO:0070509,GO:0070588,GO:0070838,GO:0071840,GO:0072375,GO:0072503,GO:0072507,GO:0072511,GO:0080134,GO:0090087,GO:0090276,GO:0090277,GO:0097435,GO:0098573,GO:0098655,GO:0098660,GO:0098662,GO:0098771,GO:0098772,GO:0098796,GO:0098798,GO:0098800,GO:0099106,GO:1902495,GO:1903034,GO:1903426,GO:1903522,GO:1903530,GO:1903532,GO:1904951,GO:1990246,GO:1990351,GO:1990542,GO:2000377
EggNOG free text desc.uniporter activity
EggNOG OGsKOG2966@1,KOG2966@2759
EC2.5.1.39
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01006,ko02000,ko03009
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-14_006605.1
Exons7
Model size1555
Cds size1515
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1053.429.1prot_E-fasciculatus_F_contig1053.429.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1053 16518..20411 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927552.0416613-UTR-E-fasciculatus_F_contig1053:16479..165171622927552.0416613-UTR-E-fasciculatus_F_contig1053:16479..16517Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1053 16480..16517 +
1695995591.624963-UTR-E-fasciculatus_F_contig1053:16479..165171695995591.624963-UTR-E-fasciculatus_F_contig1053:16479..16517Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1053 16480..16517 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927552.0587416-CDS-E-fasciculatus_F_contig1053:16517..165921622927552.0587416-CDS-E-fasciculatus_F_contig1053:16517..16592Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1053 16518..16592 +
1695995591.6381207-CDS-E-fasciculatus_F_contig1053:16517..165921695995591.6381207-CDS-E-fasciculatus_F_contig1053:16517..16592Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1053 16518..16592 +
1622927552.078926-CDS-E-fasciculatus_F_contig1053:16921..171131622927552.078926-CDS-E-fasciculatus_F_contig1053:16921..17113Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1053 16922..17113 +
1695995591.6464937-CDS-E-fasciculatus_F_contig1053:16921..171131695995591.6464937-CDS-E-fasciculatus_F_contig1053:16921..17113Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1053 16922..17113 +
1622927552.0959866-CDS-E-fasciculatus_F_contig1053:17533..176651622927552.0959866-CDS-E-fasciculatus_F_contig1053:17533..17665Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1053 17534..17665 +
1695995591.6546936-CDS-E-fasciculatus_F_contig1053:17533..176651695995591.6546936-CDS-E-fasciculatus_F_contig1053:17533..17665Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1053 17534..17665 +
1622927552.1109738-CDS-E-fasciculatus_F_contig1053:18289..183911622927552.1109738-CDS-E-fasciculatus_F_contig1053:18289..18391Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1053 18290..18391 +
1695995591.6628087-CDS-E-fasciculatus_F_contig1053:18289..183911695995591.6628087-CDS-E-fasciculatus_F_contig1053:18289..18391Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1053 18290..18391 +
1622927552.1285336-CDS-E-fasciculatus_F_contig1053:18610..194501622927552.1285336-CDS-E-fasciculatus_F_contig1053:18610..19450Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1053 18611..19450 +
1695995591.6710052-CDS-E-fasciculatus_F_contig1053:18610..194501695995591.6710052-CDS-E-fasciculatus_F_contig1053:18610..19450Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1053 18611..19450 +
1622927552.145606-CDS-E-fasciculatus_F_contig1053:19858..199391622927552.145606-CDS-E-fasciculatus_F_contig1053:19858..19939Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1053 19859..19939 +
1695995591.6798434-CDS-E-fasciculatus_F_contig1053:19858..199391695995591.6798434-CDS-E-fasciculatus_F_contig1053:19858..19939Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1053 19859..19939 +
1622927552.1583931-CDS-E-fasciculatus_F_contig1053:20318..204111622927552.1583931-CDS-E-fasciculatus_F_contig1053:20318..20411Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1053 20319..20411 +
1695995591.6890283-CDS-E-fasciculatus_F_contig1053:20318..204111695995591.6890283-CDS-E-fasciculatus_F_contig1053:20318..20411Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1053 20319..20411 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1053.429.1

>prot_E-fasciculatus_F_contig1053.429.1 ID=prot_E-fasciculatus_F_contig1053.429.1|Name=mRNA_E-fasciculatus_F_contig1053.429.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=505bp
MDEIQSSRAVLAALKGLQDKVRRLENERTQAVEEVKTFKGELMQRREDFK
HAQELQNLTIQEENAASRLSYEKLLAEKRLVDNSLGATEEVKRELQKACE
TVRDRGHDAHVAQLAAEAKASILERRVNECEQMAQAGKDRCSRARKTARR
EIAAADSQLTSLARRAEKLQRTLEDERASRQSAEFKHQRARSTTVRISRY
LDSILNVNQELVAAGTPSSVTPTARQPVPRAPGELQRKPSIRGSNATPRL
NPALEGDGIDIRAAVKEAFFVGRAGGDPVPSLTALYERLGFCAMQGEDGH
HGGTPSLPTSPSRARVGNTVEAHRFRDVHDGEDYGGHSVVKPTVVGGFFA
EDDTEVLESSRRQASGHQLDDGGSRPANGGRHHGSGNAFVGGGVTTKGYS
FANSPLARPTSAAERSPEVVKRLEALASQLERERSDVERWYKDVVHRASP
CVQEEGTDADLDARSLTNAISCLQEKSQQLDVVRESLKAFKASPQTPAIT
SPTLC
back to top

mRNA from alignment at E-fasciculatus_F_contig1053:16480..20411+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1053.429.1 ID=mRNA_E-fasciculatus_F_contig1053.429.1|Name=mRNA_E-fasciculatus_F_contig1053.429.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3932bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1053:16480..20411+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGGCAGCTGTGTGTTGGTTGCGGTAAACACGACCGGACATGGACGAGATT CAAAGCAGTAGGGCTGTTCTTGCGGCGCTGAAAGGTCTCCAGGACAAAGT TAGGCGCCTGGAGGTGAGCCACTGGGGGTATCACTGAGAAGTGGATCGGT TCTGCGGTACCAGGTACATCCTGTAGATCTTACTATCAGATCCAACAGAG ATCTTACCATCAGATCCAACAGAGGTTGTGTGCTGAAGGGATACCAAGAA AAAGCATGTGGGTTTTGTGACTGCGATATAGCAGATGCACTGAATAGGTT GCAAGCTTGCTTGTGGCTTGTGGCCGCGAAAATGTGGAATTAATTTGTAT CAGAACATACGCCGACTAAGAGAGCAAGTAAAGGCTGTGCTCACATAGAC TACATGTGGGACACTCGCCTCGTCGCTGCCTCGCCGTACCAGAACGAACG TACCCAGGCTGTCGAGGAAGTGAAAACATTCAAGGGCGAATTGATGCAGC GCCGAGAAGACTTCAAGCATGCGCAGGAGCTGCAGAACCTCACAATCCAG GAGGAAAATGCAGCATCTCGTCTGTCATACGAAAAACTTCTCGCCGAGAA GAGACTGGTTGACAACAGTCTAGGGGCGACCGAGGCGAGTGGATAGAAGA ACAGACAGACTGCAAAACAGAGACTTCGGAAGCAAACGACAACAACCAAT GTTTGCTATGATATAGACGTAGTGTACGTGGCGAAGGCATGTACTTTTCG GCTTCCAGATGAACTAAGAAACTCTCAGTACTACTACACCGTGCGTGCCC GTGGATGAACATGATGAGACGAGAGGAGCATATAGAGATGTATGTACAGG TAGGACATGTTGTAGTGATCCGTGCCATGCAAACCGCGCGTCCACCGGAT AAAGCATATGATGCTCCTCAATATGCTGGTGCTGGCGAAGCAGGCATACC CTCGTGTGCAGTTTCCGCATTCCACGAAACGCGTAAATTCATCCCTTTCC TTGTACGTTGTTGCTCGCCTTGTGTCTTTTTTCCCTACACTTCAAACATC TCAGGAGGTAAAGAGGGAGCTCCAAAAAGCATGTGAAACCGTGCGCGATC GTGGACACGACGCACATGTGGCACAGTTGGCGGCGGAAGCTAAGGCTTCT ATTTTGGAGAGGCGGGTCAACGAATGCGAACAAATGGTGAGATAGGTTTC TTCGTGGTGAGCAAGAATATGAAACCACACAACATGCTTACTGTACACGA CCCACGTCACCCAAAATCGATATTGAGTACAATATAGTACAATATTTTGG CTGTGACTATCTACGTGAGGGTGGAGACTGGCGCCCAGAATAAGTGGGAC TAGAATACCCTATGTAGCTGTAGCGTCGAAACCGCAGAGTGGGTGAACTG AACGGTGATGACGTGTAGAAAACAGGCAGCTAACATGCCTGATCAAGGTA CGGTCGTCTAGCTTGAGGAACGGTGTTGAATATGGACTTCTGGGCCTCTG GGTATGTGGGCGCCTTGTTTCTTCGCTTCCGTATTTGTTCCAGACGAAAA CGAACTAAGCACCAGCCGCACGTTTCAGCTCATGCTCTTGGTCTCGGTGA ACAACTCAGTATCACCAAGAACACCCGACTAAATGGGGACGGTTCTTCAG CACCAGGACGTCTATACCTGTGTCTTTTTTGGCGGTAGATCTGTCACTCA GAGAACGAGTGTCCACCTGCACAGTCCAATTAAAGTTTCTGAGTATTTAA CTGTGGATCGTGATGAACTTGACGTCCTGACATTGAGCGTTTTCTTGCCT GCGCTTGCAGGCCCAGGCTGGGAAAGACCGATGCTCGCGAGCAAGGAAAA CCGCCCGTCGGGAAATAGCCGCGGCAGATTCTCAGCTCACCAGTTTGGCC AGAAGAGCGGAGGTGAGGGCATTGCGCGACTGATGTTGGCATCCAGCTGA GAAGAAAACCACCAAGATCCAAACGGTTGCACAGCAGAGGCTAGCGTGGA GAGCTTACGCCGGTACGACAAGGTGACACTCCGTCTCGAGGCGCCCTCGA CGTAGCGTGTTTCCTTGCGAAACGCAGTCAGACTATTCCTCCCTGCCTTT GGTCCGTCTATGCCGCTGTGAACACTTGCAGAAGCTCCAGCGCACTCTAG AGGACGAGCGTGCCTCTCGACAGTCCGCCGAATTCAAGCACCAACGAGCC AGAAGTACGACAGTTCGAATTAGCCGGTACCTCGACTCAATCCTCAATGT TAATCAAGAGCTCGTGGCAGCAGGGACGCCCTCGTCCGTAACGCCAACAG CGAGGCAACCTGTACCGAGAGCACCAGGCGAGCTCCAGCGAAAACCTAGC ATCAGAGGCAGCAACGCTACCCCCCGTCTGAACCCAGCATTGGAAGGCGA CGGGATTGACATTCGCGCCGCTGTGAAAGAGGCGTTTTTCGTTGGTCGTG CTGGTGGAGATCCCGTTCCGTCTCTCACGGCGCTGTACGAGCGACTTGGG TTCTGCGCCATGCAAGGCGAAGACGGACACCATGGTGGCACGCCGAGTTT GCCTACGAGCCCCAGTCGAGCCAGGGTCGGTAACACTGTCGAGGCGCATA GATTCCGGGATGTCCATGACGGGGAAGATTACGGTGGCCACAGCGTTGTA AAACCCACAGTTGTAGGTGGTTTCTTCGCTGAGGATGACACAGAGGTTTT GGAGTCGTCAAGACGACAGGCTAGCGGCCACCAACTCGATGATGGAGGGT CCAGACCGGCCAATGGCGGGAGACATCACGGAAGTGGGAATGCGTTTGTC GGTGGTGGAGTTACAACCAAGGGTTATTCCTTTGCTAACTCGCCATTAGC GAGGCCGACATCTGCTGCCGAGAGGTCTCCCGAGGTTGTGAAACGGTTGG AGGCGTTGGCGTCACAGCTGGAGAGGGAGAGGTCGGACGTGGAGCGGTGG TACAAGGATGTGGTGCACAGGGTACGTAGTCATTATCAGCCCCCATCGCA TGATGTGGATGAAATTTCATGAAGTAGCTCGAACCATCTCCGTGGTTGAT TCCTCCGGTCGTGTTGTACAAGCAGGATAGGTTTACAACCTTCTGTAGGG TGCACATACTACGTCTGAGCTGCGCTCGTGATGATATTTGGTGTTTGTGG TCCACAAGGCGGCCTAGAAACCTCCATCGCAGATTTGACGGAACGTCACT CAAAGCGTTTCGCTGTAGGGCTAGGATACTGGTACGCTTTTCAAAGCCCC TCTTGTACTCAGCTGACACAACGAACTGTAGCTGCGCTGTGATCGTGAAA TAATTATGATACCTGCCTACATGGCGTTTTTTAACAGTCACCCCCTACTC TTTGTGGGTCCCTCTCCGCCACATGGTAGGCAAGTCCCTGCGTGCAAGAG GAAGGGACTGATGCGGATCTCGACGCCCGAAGCCTCACAAATGCTATTTC ATGTCTTCAAGTGAGTTTGAAGTTGGCGTGTTGAAAACTCGCCCACTTCA TAACCAAGCAAATCGTCTTGTCTTACGAGCTGTGGCACATTGAAGAAATA TTTCAGAAACGTTCAAGTCTTCGCCACAATGGAAATAGTGCTGTCATACC CGTGTCGATATCATTCAGCGCTGTATGTTGCTTGTGCTTCCAGCGTATGG CTGGTGTACAAAGGCCAATCCACACTTGAACTGAAGCTGCTCGATCAACC GCGAATAGTACGATTCCCGGAGTGCGACCACAGCTTTGCTCCATACAGGT CACCACAGATACAGAATAGAATACAGTTTTAGCGTGCGTGATAAGAAGTT GACTTCATACATTCGACCCCACCCCTCCCTCCTCGACAGGAAAAATCCCA GCAGCTGGACGTGGTTCGCGAGAGCTTGAAAGCGTTCAAAGCCTCTCCAC AGACGCCGGCAATCACAAGTCCCACCTTGTGT
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1053:16480..20411+

>mRNA_E-fasciculatus_F_contig1053.429.1 ID=mRNA_E-fasciculatus_F_contig1053.429.1|Name=mRNA_E-fasciculatus_F_contig1053.429.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=3030bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1053:16480..20411+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGACGAGATTCAAAGCAGTAGGGCTGTTCTTGCGGCGCTGAAAGGTCT
CCAGGACAAAGTTAGGCGCCTGGAGATGGACGAGATTCAAAGCAGTAGGG
CTGTTCTTGCGGCGCTGAAAGGTCTCCAGGACAAAGTTAGGCGCCTGGAG
AACGAACGTACCCAGGCTGTCGAGGAAGTGAAAACATTCAAGGGCGAATT
GATGCAGCGCCGAGAAGACTTCAAGCATGCGCAGGAGCTGCAGAACCTCA
CAATCCAGGAGGAAAATGCAGCATCTCGTCTGTCATACGAAAAACTTCTC
GCCGAGAAGAGACTGGTTGACAACAGTCTAGGGGCGACCGAGAACGAACG
TACCCAGGCTGTCGAGGAAGTGAAAACATTCAAGGGCGAATTGATGCAGC
GCCGAGAAGACTTCAAGCATGCGCAGGAGCTGCAGAACCTCACAATCCAG
GAGGAAAATGCAGCATCTCGTCTGTCATACGAAAAACTTCTCGCCGAGAA
GAGACTGGTTGACAACAGTCTAGGGGCGACCGAGGAGGTAAAGAGGGAGC
TCCAAAAAGCATGTGAAACCGTGCGCGATCGTGGACACGACGCACATGTG
GCACAGTTGGCGGCGGAAGCTAAGGCTTCTATTTTGGAGAGGCGGGTCAA
CGAATGCGAACAAATGGAGGTAAAGAGGGAGCTCCAAAAAGCATGTGAAA
CCGTGCGCGATCGTGGACACGACGCACATGTGGCACAGTTGGCGGCGGAA
GCTAAGGCTTCTATTTTGGAGAGGCGGGTCAACGAATGCGAACAAATGGC
CCAGGCTGGGAAAGACCGATGCTCGCGAGCAAGGAAAACCGCCCGTCGGG
AAATAGCCGCGGCAGATTCTCAGCTCACCAGTTTGGCCAGAAGAGCGGAG
GCCCAGGCTGGGAAAGACCGATGCTCGCGAGCAAGGAAAACCGCCCGTCG
GGAAATAGCCGCGGCAGATTCTCAGCTCACCAGTTTGGCCAGAAGAGCGG
AGAAGCTCCAGCGCACTCTAGAGGACGAGCGTGCCTCTCGACAGTCCGCC
GAATTCAAGCACCAACGAGCCAGAAGTACGACAGTTCGAATTAGCCGGTA
CCTCGACTCAATCCTCAATGTTAATCAAGAGCTCGTGGCAGCAGGGACGC
CCTCGTCCGTAACGCCAACAGCGAGGCAACCTGTACCGAGAGCACCAGGC
GAGCTCCAGCGAAAACCTAGCATCAGAGGCAGCAACGCTACCCCCCGTCT
GAACCCAGCATTGGAAGGCGACGGGATTGACATTCGCGCCGCTGTGAAAG
AGGCGTTTTTCGTTGGTCGTGCTGGTGGAGATCCCGTTCCGTCTCTCACG
GCGCTGTACGAGCGACTTGGGTTCTGCGCCATGCAAGGCGAAGACGGACA
CCATGGTGGCACGCCGAGTTTGCCTACGAGCCCCAGTCGAGCCAGGGTCG
GTAACACTGTCGAGGCGCATAGATTCCGGGATGTCCATGACGGGGAAGAT
TACGGTGGCCACAGCGTTGTAAAACCCACAGTTGTAGGTGGTTTCTTCGC
TGAGGATGACACAGAGGTTTTGGAGTCGTCAAGACGACAGGCTAGCGGCC
ACCAACTCGATGATGGAGGGTCCAGACCGGCCAATGGCGGGAGACATCAC
GGAAGTGGGAATGCGTTTGTCGGTGGTGGAGTTACAACCAAGGGTTATTC
CTTTGCTAACTCGCCATTAGCGAGGCCGACATCTGCTGCCGAGAGGTCTC
CCGAGGTTGTGAAACGGTTGGAGGCGTTGGCGTCACAGCTGGAGAGGGAG
AGGTCGGACGTGGAGCGGTGGTACAAGGATGTGGTGCACAGGAAGCTCCA
GCGCACTCTAGAGGACGAGCGTGCCTCTCGACAGTCCGCCGAATTCAAGC
ACCAACGAGCCAGAAGTACGACAGTTCGAATTAGCCGGTACCTCGACTCA
ATCCTCAATGTTAATCAAGAGCTCGTGGCAGCAGGGACGCCCTCGTCCGT
AACGCCAACAGCGAGGCAACCTGTACCGAGAGCACCAGGCGAGCTCCAGC
GAAAACCTAGCATCAGAGGCAGCAACGCTACCCCCCGTCTGAACCCAGCA
TTGGAAGGCGACGGGATTGACATTCGCGCCGCTGTGAAAGAGGCGTTTTT
CGTTGGTCGTGCTGGTGGAGATCCCGTTCCGTCTCTCACGGCGCTGTACG
AGCGACTTGGGTTCTGCGCCATGCAAGGCGAAGACGGACACCATGGTGGC
ACGCCGAGTTTGCCTACGAGCCCCAGTCGAGCCAGGGTCGGTAACACTGT
CGAGGCGCATAGATTCCGGGATGTCCATGACGGGGAAGATTACGGTGGCC
ACAGCGTTGTAAAACCCACAGTTGTAGGTGGTTTCTTCGCTGAGGATGAC
ACAGAGGTTTTGGAGTCGTCAAGACGACAGGCTAGCGGCCACCAACTCGA
TGATGGAGGGTCCAGACCGGCCAATGGCGGGAGACATCACGGAAGTGGGA
ATGCGTTTGTCGGTGGTGGAGTTACAACCAAGGGTTATTCCTTTGCTAAC
TCGCCATTAGCGAGGCCGACATCTGCTGCCGAGAGGTCTCCCGAGGTTGT
GAAACGGTTGGAGGCGTTGGCGTCACAGCTGGAGAGGGAGAGGTCGGACG
TGGAGCGGTGGTACAAGGATGTGGTGCACAGGGCAAGTCCCTGCGTGCAA
GAGGAAGGGACTGATGCGGATCTCGACGCCCGAAGCCTCACAAATGCTAT
TTCATGTCTTCAAGCAAGTCCCTGCGTGCAAGAGGAAGGGACTGATGCGG
ATCTCGACGCCCGAAGCCTCACAAATGCTATTTCATGTCTTCAAGAAAAA
TCCCAGCAGCTGGACGTGGTTCGCGAGAGCTTGAAAGCGTTCAAAGCCTC
TCCACAGACGCCGGCAATCACAAGTCCCACCTTGTGTGAAAAATCCCAGC
AGCTGGACGTGGTTCGCGAGAGCTTGAAAGCGTTCAAAGCCTCTCCACAG
ACGCCGGCAATCACAAGTCCCACCTTGTGT
back to top