mRNA_E-fasciculatus_F_contig1053.428.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1053.428.1 vs. uniprot
Match: D7G586_ECTSI (Dynein light chain roadblock n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G586_ECTSI) HSP 1 Score: 192 bits (487), Expect = 6.840e-62 Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 1
Query: 1 MSSEVEETLKRIQSHRGVKGVLILNNDGIPIRSNLSQEDTDTYSALISQLSFKANGIVRTLDEADSLTFLRLRSTKHEIMVAPDKDYILIVIQNPHSK 294
MSSEVEETLKRIQSHRGVKGVLILNNDGIPIRSNLSQEDTDTYSALISQLSFKANGIVRTLDEADSLTFLRLRSTKHEIMVAPDKDYILIVIQNPHSK
Sbjct: 1 MSSEVEETLKRIQSHRGVKGVLILNNDGIPIRSNLSQEDTDTYSALISQLSFKANGIVRTLDEADSLTFLRLRSTKHEIMVAPDKDYILIVIQNPHSK 98
BLAST of mRNA_E-fasciculatus_F_contig1053.428.1 vs. uniprot
Match: A0A836CL08_9STRA (Dynein light chain roadblock n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CL08_9STRA) HSP 1 Score: 169 bits (428), Expect = 6.850e-53 Identity = 82/97 (84.54%), Postives = 93/97 (95.88%), Query Frame = 1
Query: 1 MSSEVEETLKRIQSHRGVKGVLILNNDGIPIRSNLSQEDTDTYSALISQLSFKANGIVRTLDEADSLTFLRLRSTKHEIMVAPDKDYILIVIQNPHS 291
MSSEVEETLKRIQSHRGVKGVLI+N +GIPIRSN++QEDTDTY+ALISQL+FKANGI+RTLDE DSLTFLRLRS KHEIMVAPDKD+ LIV+QNP++
Sbjct: 1 MSSEVEETLKRIQSHRGVKGVLIINQEGIPIRSNMNQEDTDTYAALISQLNFKANGIIRTLDETDSLTFLRLRSQKHEIMVAPDKDFTLIVVQNPNA 97
BLAST of mRNA_E-fasciculatus_F_contig1053.428.1 vs. uniprot
Match: A0A482SBS1_9ARCH (Roadblock/LC7 domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SBS1_9ARCH) HSP 1 Score: 157 bits (397), Expect = 3.660e-48 Identity = 75/97 (77.32%), Postives = 88/97 (90.72%), Query Frame = 1
Query: 1 MSSEVEETLKRIQSHRGVKGVLILNNDGIPIRSNLSQEDTDTYSALISQLSFKANGIVRTLDEADSLTFLRLRSTKHEIMVAPDKDYILIVIQNPHS 291
MSSEVEETLKRIQSH+GVKGVLI+N +GIPIRSNLS EDT+ Y+AL+SQL+FKA+G+VR LDE D L FLR+RS KHEIMVAPDKDY+L+VIQNP+
Sbjct: 1 MSSEVEETLKRIQSHKGVKGVLIMNAEGIPIRSNLSPEDTENYAALVSQLAFKASGVVRCLDETDELAFLRIRSKKHEIMVAPDKDYVLVVIQNPNE 97
BLAST of mRNA_E-fasciculatus_F_contig1053.428.1 vs. uniprot
Match: A0A7S2FUR4_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FUR4_9STRA) HSP 1 Score: 152 bits (384), Expect = 1.100e-45 Identity = 73/96 (76.04%), Postives = 86/96 (89.58%), Query Frame = 1
Query: 1 MSSEVEETLKRIQSHRGVKGVLILNNDGIPIRSNLSQEDTDTYSALISQLSFKANGIVRTLDEADSLTFLRLRSTKHEIMVAPDKDYILIVIQNPH 288
MS+EVEETLKRIQSHRGVKGVLI N++G+PIRSNL ED TYSAL+SQL+ KAN +VR LDEAD LTFLR+RS KHEIM+APDK+++LIVIQNP+
Sbjct: 38 MSTEVEETLKRIQSHRGVKGVLICNSEGVPIRSNLPAEDEQTYSALVSQLAMKANNVVRNLDEADELTFLRIRSKKHEIMIAPDKEFLLIVIQNPN 133
BLAST of mRNA_E-fasciculatus_F_contig1053.428.1 vs. uniprot
Match: A0A7S1U8Y1_9STRA (Dynein light chain roadblock n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U8Y1_9STRA) HSP 1 Score: 147 bits (371), Expect = 3.370e-44 Identity = 71/93 (76.34%), Postives = 85/93 (91.40%), Query Frame = 1
Query: 1 MSSEVEETLKRIQSHRGVKGVLILNNDGIPIRSNLSQEDTDTYSALISQLSFKANGIVRTLDEADSLTFLRLRSTKHEIMVAPDKDYILIVIQ 279
MS+ VEETLKRIQSHRGVKGVLI+N+DG+PIRS L+QE TD+Y+AL+SQL+FKA+ +VRTLDE D LTFLR+RS K EIMVAPD+DY+LIVIQ
Sbjct: 1 MSAAVEETLKRIQSHRGVKGVLIVNSDGVPIRSTLNQESTDSYAALLSQLAFKASSVVRTLDETDGLTFLRIRSNKEEIMVAPDRDYLLIVIQ 93
BLAST of mRNA_E-fasciculatus_F_contig1053.428.1 vs. uniprot
Match: A0A7S2STB6_9STRA (Dynein light chain roadblock n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2STB6_9STRA) HSP 1 Score: 144 bits (364), Expect = 5.180e-43 Identity = 68/96 (70.83%), Postives = 83/96 (86.46%), Query Frame = 1
Query: 1 MSSEVEETLKRIQSHRGVKGVLILNNDGIPIRSNLSQEDTDTYSALISQLSFKANGIVRTLDEADSLTFLRLRSTKHEIMVAPDKDYILIVIQNPH 288
MS EVEET+KRIQSHRGVKGV+I N++G+PIRSNL ED YSAL+SQL+ KA+ +VRTLDE D L FLR+RS KHE+MVAPDK+++LIVIQNP+
Sbjct: 10 MSMEVEETMKRIQSHRGVKGVVICNSEGVPIRSNLEPEDEQNYSALVSQLAIKASSVVRTLDETDDLAFLRIRSKKHEVMVAPDKEFLLIVIQNPN 105
BLAST of mRNA_E-fasciculatus_F_contig1053.428.1 vs. uniprot
Match: F0Y4U8_AURAN (Dynein light chain roadblock n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y4U8_AURAN) HSP 1 Score: 141 bits (355), Expect = 8.990e-42 Identity = 68/97 (70.10%), Postives = 83/97 (85.57%), Query Frame = 1
Query: 1 MSSEVEETLKRIQSHRGVKGVLILNNDGIPIRSNLSQEDTDTYSALISQLSFKANGIVRTLDEADSLTFLRLRSTKHEIMVAPDKDYILIVIQNPHS 291
MSSEVEETL+RIQSHRGVKGVLI++ G+PIRSNL E+T+TY+AL+SQL+ KA+ +VRTLDE D LTF R+RS KHEIM+APD +Y+LIVIQ S
Sbjct: 1 MSSEVEETLRRIQSHRGVKGVLIVSAQGVPIRSNLENEETNTYAALLSQLAMKASSVVRTLDETDELTFFRIRSKKHEIMIAPDAEYLLIVIQETAS 97
BLAST of mRNA_E-fasciculatus_F_contig1053.428.1 vs. uniprot
Match: A0A8J2WXW4_9STRA (Dynein light chain roadblock n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WXW4_9STRA) HSP 1 Score: 136 bits (342), Expect = 8.620e-40 Identity = 65/93 (69.89%), Postives = 79/93 (84.95%), Query Frame = 1
Query: 1 MSSEVEETLKRIQSHRGVKGVLILNNDGIPIRSNLSQEDTDTYSALISQLSFKANGIVRTLDEADSLTFLRLRSTKHEIMVAPDKDYILIVIQ 279
MSSEVEETLKRIQSHRGVKGVLI++ DG+PIRSNL ++T TY+AL+SQL+ KA +VR LD+ D L F R+RS KHEIMVAPD +Y+LIV+Q
Sbjct: 1 MSSEVEETLKRIQSHRGVKGVLIVSADGVPIRSNLDDDETQTYAALLSQLATKARNVVRVLDDQDELAFFRIRSNKHEIMVAPDPEYLLIVVQ 93
BLAST of mRNA_E-fasciculatus_F_contig1053.428.1 vs. uniprot
Match: A0A1Y2ATV3_9FUNG (Dynein light chain roadblock n=3 Tax=Neocallimastigaceae TaxID=29007 RepID=A0A1Y2ATV3_9FUNG) HSP 1 Score: 132 bits (333), Expect = 2.290e-38 Identity = 65/95 (68.42%), Postives = 78/95 (82.11%), Query Frame = 1
Query: 7 SEVEETLKRIQSHRGVKGVLILNNDGIPIRSNLSQEDTDTYSALISQLSFKANGIVRTLDEADSLTFLRLRSTKHEIMVAPDKDYILIVIQNPHS 291
SEVEET+KR+QSH+GV+G++I+NNDGIPIRS L T YSALI+QL+ KA +VR LD + LTFLR+RS KHEIMVAPDK+YILIVIQNP
Sbjct: 2 SEVEETIKRLQSHKGVEGIVIVNNDGIPIRSTLDNNLTVQYSALITQLASKARSVVRDLDPQNDLTFLRIRSKKHEIMVAPDKEYILIVIQNPQE 96
BLAST of mRNA_E-fasciculatus_F_contig1053.428.1 vs. uniprot
Match: C5KNE1_PERM5 (Roadblock, putative n=1 Tax=Perkinsus marinus (strain ATCC 50983 / TXsc) TaxID=423536 RepID=C5KNE1_PERM5) HSP 1 Score: 132 bits (333), Expect = 3.930e-38 Identity = 64/97 (65.98%), Postives = 82/97 (84.54%), Query Frame = 1
Query: 1 MSSEVEETLKRIQSHRGVKGVLILNNDGIPIRSNLSQEDTDTYSALISQLSFKANGIVRTLDEADSLTFLRLRSTKHEIMVAPDKDYILIVIQNPHS 291
+ SEVEETL RI++H+GV G++ILN++G+PIRS L Q+ T YSALISQL++KA ++R LD + LTFLRLRS KHEIMVAPDKDYILIVIQ+P++
Sbjct: 14 LMSEVEETLNRIKTHKGVSGIVILNHEGVPIRSTLEQKYTLQYSALISQLTYKARSVIRDLDPHNDLTFLRLRSRKHEIMVAPDKDYILIVIQDPNA 110 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1053.428.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1053.428.1 >prot_E-fasciculatus_F_contig1053.428.1 ID=prot_E-fasciculatus_F_contig1053.428.1|Name=mRNA_E-fasciculatus_F_contig1053.428.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=99bp MSSEVEETLKRIQSHRGVKGVLILNNDGIPIRSNLSQEDTDTYSALISQLback to top mRNA from alignment at E-fasciculatus_F_contig1053:15713..16009- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1053.428.1 ID=mRNA_E-fasciculatus_F_contig1053.428.1|Name=mRNA_E-fasciculatus_F_contig1053.428.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=297bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1053:15713..16009- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1053:15713..16009- >mRNA_E-fasciculatus_F_contig1053.428.1 ID=mRNA_E-fasciculatus_F_contig1053.428.1|Name=mRNA_E-fasciculatus_F_contig1053.428.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=594bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1053:15713..16009- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |