mRNA_E-fasciculatus_F_contig1053.428.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1053.428.1
Unique NamemRNA_E-fasciculatus_F_contig1053.428.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig1053.428.1 vs. uniprot
Match: D7G586_ECTSI (Dynein light chain roadblock n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G586_ECTSI)

HSP 1 Score: 192 bits (487), Expect = 6.840e-62
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 1
Query:    1 MSSEVEETLKRIQSHRGVKGVLILNNDGIPIRSNLSQEDTDTYSALISQLSFKANGIVRTLDEADSLTFLRLRSTKHEIMVAPDKDYILIVIQNPHSK 294
            MSSEVEETLKRIQSHRGVKGVLILNNDGIPIRSNLSQEDTDTYSALISQLSFKANGIVRTLDEADSLTFLRLRSTKHEIMVAPDKDYILIVIQNPHSK
Sbjct:    1 MSSEVEETLKRIQSHRGVKGVLILNNDGIPIRSNLSQEDTDTYSALISQLSFKANGIVRTLDEADSLTFLRLRSTKHEIMVAPDKDYILIVIQNPHSK 98          
BLAST of mRNA_E-fasciculatus_F_contig1053.428.1 vs. uniprot
Match: A0A836CL08_9STRA (Dynein light chain roadblock n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CL08_9STRA)

HSP 1 Score: 169 bits (428), Expect = 6.850e-53
Identity = 82/97 (84.54%), Postives = 93/97 (95.88%), Query Frame = 1
Query:    1 MSSEVEETLKRIQSHRGVKGVLILNNDGIPIRSNLSQEDTDTYSALISQLSFKANGIVRTLDEADSLTFLRLRSTKHEIMVAPDKDYILIVIQNPHS 291
            MSSEVEETLKRIQSHRGVKGVLI+N +GIPIRSN++QEDTDTY+ALISQL+FKANGI+RTLDE DSLTFLRLRS KHEIMVAPDKD+ LIV+QNP++
Sbjct:    1 MSSEVEETLKRIQSHRGVKGVLIINQEGIPIRSNMNQEDTDTYAALISQLNFKANGIIRTLDETDSLTFLRLRSQKHEIMVAPDKDFTLIVVQNPNA 97          
BLAST of mRNA_E-fasciculatus_F_contig1053.428.1 vs. uniprot
Match: A0A482SBS1_9ARCH (Roadblock/LC7 domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SBS1_9ARCH)

HSP 1 Score: 157 bits (397), Expect = 3.660e-48
Identity = 75/97 (77.32%), Postives = 88/97 (90.72%), Query Frame = 1
Query:    1 MSSEVEETLKRIQSHRGVKGVLILNNDGIPIRSNLSQEDTDTYSALISQLSFKANGIVRTLDEADSLTFLRLRSTKHEIMVAPDKDYILIVIQNPHS 291
            MSSEVEETLKRIQSH+GVKGVLI+N +GIPIRSNLS EDT+ Y+AL+SQL+FKA+G+VR LDE D L FLR+RS KHEIMVAPDKDY+L+VIQNP+ 
Sbjct:    1 MSSEVEETLKRIQSHKGVKGVLIMNAEGIPIRSNLSPEDTENYAALVSQLAFKASGVVRCLDETDELAFLRIRSKKHEIMVAPDKDYVLVVIQNPNE 97          
BLAST of mRNA_E-fasciculatus_F_contig1053.428.1 vs. uniprot
Match: A0A7S2FUR4_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FUR4_9STRA)

HSP 1 Score: 152 bits (384), Expect = 1.100e-45
Identity = 73/96 (76.04%), Postives = 86/96 (89.58%), Query Frame = 1
Query:    1 MSSEVEETLKRIQSHRGVKGVLILNNDGIPIRSNLSQEDTDTYSALISQLSFKANGIVRTLDEADSLTFLRLRSTKHEIMVAPDKDYILIVIQNPH 288
            MS+EVEETLKRIQSHRGVKGVLI N++G+PIRSNL  ED  TYSAL+SQL+ KAN +VR LDEAD LTFLR+RS KHEIM+APDK+++LIVIQNP+
Sbjct:   38 MSTEVEETLKRIQSHRGVKGVLICNSEGVPIRSNLPAEDEQTYSALVSQLAMKANNVVRNLDEADELTFLRIRSKKHEIMIAPDKEFLLIVIQNPN 133          
BLAST of mRNA_E-fasciculatus_F_contig1053.428.1 vs. uniprot
Match: A0A7S1U8Y1_9STRA (Dynein light chain roadblock n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U8Y1_9STRA)

HSP 1 Score: 147 bits (371), Expect = 3.370e-44
Identity = 71/93 (76.34%), Postives = 85/93 (91.40%), Query Frame = 1
Query:    1 MSSEVEETLKRIQSHRGVKGVLILNNDGIPIRSNLSQEDTDTYSALISQLSFKANGIVRTLDEADSLTFLRLRSTKHEIMVAPDKDYILIVIQ 279
            MS+ VEETLKRIQSHRGVKGVLI+N+DG+PIRS L+QE TD+Y+AL+SQL+FKA+ +VRTLDE D LTFLR+RS K EIMVAPD+DY+LIVIQ
Sbjct:    1 MSAAVEETLKRIQSHRGVKGVLIVNSDGVPIRSTLNQESTDSYAALLSQLAFKASSVVRTLDETDGLTFLRIRSNKEEIMVAPDRDYLLIVIQ 93          
BLAST of mRNA_E-fasciculatus_F_contig1053.428.1 vs. uniprot
Match: A0A7S2STB6_9STRA (Dynein light chain roadblock n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2STB6_9STRA)

HSP 1 Score: 144 bits (364), Expect = 5.180e-43
Identity = 68/96 (70.83%), Postives = 83/96 (86.46%), Query Frame = 1
Query:    1 MSSEVEETLKRIQSHRGVKGVLILNNDGIPIRSNLSQEDTDTYSALISQLSFKANGIVRTLDEADSLTFLRLRSTKHEIMVAPDKDYILIVIQNPH 288
            MS EVEET+KRIQSHRGVKGV+I N++G+PIRSNL  ED   YSAL+SQL+ KA+ +VRTLDE D L FLR+RS KHE+MVAPDK+++LIVIQNP+
Sbjct:   10 MSMEVEETMKRIQSHRGVKGVVICNSEGVPIRSNLEPEDEQNYSALVSQLAIKASSVVRTLDETDDLAFLRIRSKKHEVMVAPDKEFLLIVIQNPN 105          
BLAST of mRNA_E-fasciculatus_F_contig1053.428.1 vs. uniprot
Match: F0Y4U8_AURAN (Dynein light chain roadblock n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y4U8_AURAN)

HSP 1 Score: 141 bits (355), Expect = 8.990e-42
Identity = 68/97 (70.10%), Postives = 83/97 (85.57%), Query Frame = 1
Query:    1 MSSEVEETLKRIQSHRGVKGVLILNNDGIPIRSNLSQEDTDTYSALISQLSFKANGIVRTLDEADSLTFLRLRSTKHEIMVAPDKDYILIVIQNPHS 291
            MSSEVEETL+RIQSHRGVKGVLI++  G+PIRSNL  E+T+TY+AL+SQL+ KA+ +VRTLDE D LTF R+RS KHEIM+APD +Y+LIVIQ   S
Sbjct:    1 MSSEVEETLRRIQSHRGVKGVLIVSAQGVPIRSNLENEETNTYAALLSQLAMKASSVVRTLDETDELTFFRIRSKKHEIMIAPDAEYLLIVIQETAS 97          
BLAST of mRNA_E-fasciculatus_F_contig1053.428.1 vs. uniprot
Match: A0A8J2WXW4_9STRA (Dynein light chain roadblock n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WXW4_9STRA)

HSP 1 Score: 136 bits (342), Expect = 8.620e-40
Identity = 65/93 (69.89%), Postives = 79/93 (84.95%), Query Frame = 1
Query:    1 MSSEVEETLKRIQSHRGVKGVLILNNDGIPIRSNLSQEDTDTYSALISQLSFKANGIVRTLDEADSLTFLRLRSTKHEIMVAPDKDYILIVIQ 279
            MSSEVEETLKRIQSHRGVKGVLI++ DG+PIRSNL  ++T TY+AL+SQL+ KA  +VR LD+ D L F R+RS KHEIMVAPD +Y+LIV+Q
Sbjct:    1 MSSEVEETLKRIQSHRGVKGVLIVSADGVPIRSNLDDDETQTYAALLSQLATKARNVVRVLDDQDELAFFRIRSNKHEIMVAPDPEYLLIVVQ 93          
BLAST of mRNA_E-fasciculatus_F_contig1053.428.1 vs. uniprot
Match: A0A1Y2ATV3_9FUNG (Dynein light chain roadblock n=3 Tax=Neocallimastigaceae TaxID=29007 RepID=A0A1Y2ATV3_9FUNG)

HSP 1 Score: 132 bits (333), Expect = 2.290e-38
Identity = 65/95 (68.42%), Postives = 78/95 (82.11%), Query Frame = 1
Query:    7 SEVEETLKRIQSHRGVKGVLILNNDGIPIRSNLSQEDTDTYSALISQLSFKANGIVRTLDEADSLTFLRLRSTKHEIMVAPDKDYILIVIQNPHS 291
            SEVEET+KR+QSH+GV+G++I+NNDGIPIRS L    T  YSALI+QL+ KA  +VR LD  + LTFLR+RS KHEIMVAPDK+YILIVIQNP  
Sbjct:    2 SEVEETIKRLQSHKGVEGIVIVNNDGIPIRSTLDNNLTVQYSALITQLASKARSVVRDLDPQNDLTFLRIRSKKHEIMVAPDKEYILIVIQNPQE 96          
BLAST of mRNA_E-fasciculatus_F_contig1053.428.1 vs. uniprot
Match: C5KNE1_PERM5 (Roadblock, putative n=1 Tax=Perkinsus marinus (strain ATCC 50983 / TXsc) TaxID=423536 RepID=C5KNE1_PERM5)

HSP 1 Score: 132 bits (333), Expect = 3.930e-38
Identity = 64/97 (65.98%), Postives = 82/97 (84.54%), Query Frame = 1
Query:    1 MSSEVEETLKRIQSHRGVKGVLILNNDGIPIRSNLSQEDTDTYSALISQLSFKANGIVRTLDEADSLTFLRLRSTKHEIMVAPDKDYILIVIQNPHS 291
            + SEVEETL RI++H+GV G++ILN++G+PIRS L Q+ T  YSALISQL++KA  ++R LD  + LTFLRLRS KHEIMVAPDKDYILIVIQ+P++
Sbjct:   14 LMSEVEETLNRIKTHKGVSGIVILNHEGVPIRSTLEQKYTLQYSALISQLTYKARSVIRDLDPHNDLTFLRLRSRKHEIMVAPDKDYILIVIQDPNA 110          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1053.428.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G586_ECTSI6.840e-62100.00Dynein light chain roadblock n=2 Tax=Ectocarpus Ta... [more]
A0A836CL08_9STRA6.850e-5384.54Dynein light chain roadblock n=1 Tax=Tribonema min... [more]
A0A482SBS1_9ARCH3.660e-4877.32Roadblock/LC7 domain-containing protein n=1 Tax=ar... [more]
A0A7S2FUR4_9STRA1.100e-4576.04Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S1U8Y1_9STRA3.370e-4476.34Dynein light chain roadblock n=1 Tax=Phaeomonas pa... [more]
A0A7S2STB6_9STRA5.180e-4370.83Dynein light chain roadblock n=1 Tax=Rhizochromuli... [more]
F0Y4U8_AURAN8.990e-4270.10Dynein light chain roadblock n=1 Tax=Aureococcus a... [more]
A0A8J2WXW4_9STRA8.620e-4069.89Dynein light chain roadblock n=1 Tax=Pelagomonas c... [more]
A0A1Y2ATV3_9FUNG2.290e-3868.42Dynein light chain roadblock n=3 Tax=Neocallimasti... [more]
C5KNE1_PERM53.930e-3865.98Roadblock, putative n=1 Tax=Perkinsus marinus (str... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1053contigE-fasciculatus_F_contig1053:15713..16009 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score191.8
Seed ortholog evalue1.5e-46
Seed eggNOG ortholog2880.D7G586
KEGG koko:K10419
EggNOG free text desc.dynein intermediate chain binding
EggNOG OGsKOG4115@1,KOG4115@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131,ko04812
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionputative: flagellar outer dynein arm light chain LC7
Ec32 orthologEc-14_006610.1
Exons1
Model size297
Cds size297
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927551.9719448-CDS-E-fasciculatus_F_contig1053:15712..160091622927551.9719448-CDS-E-fasciculatus_F_contig1053:15712..16009Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1053 15713..16009 -
1695995591.6132784-CDS-E-fasciculatus_F_contig1053:15712..160091695995591.6132784-CDS-E-fasciculatus_F_contig1053:15712..16009Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1053 15713..16009 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1053.428.1prot_E-fasciculatus_F_contig1053.428.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1053 15713..16009 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1053.428.1

>prot_E-fasciculatus_F_contig1053.428.1 ID=prot_E-fasciculatus_F_contig1053.428.1|Name=mRNA_E-fasciculatus_F_contig1053.428.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=99bp
MSSEVEETLKRIQSHRGVKGVLILNNDGIPIRSNLSQEDTDTYSALISQL
SFKANGIVRTLDEADSLTFLRLRSTKHEIMVAPDKDYILIVIQNPHSK*
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mRNA from alignment at E-fasciculatus_F_contig1053:15713..16009-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1053.428.1 ID=mRNA_E-fasciculatus_F_contig1053.428.1|Name=mRNA_E-fasciculatus_F_contig1053.428.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=297bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1053:15713..16009- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTCGTCCGAGGTGGAGGAGACTCTCAAGCGAATCCAGTCACACCGGGG GGTGAAGGGGGTGCTAATCTTGAACAACGATGGAATCCCTATTCGATCCA ACCTCAGCCAAGAGGACACGGACACGTACTCGGCTTTGATCAGCCAGCTG AGCTTCAAGGCAAATGGTATAGTACGAACGCTGGATGAGGCAGACAGCCT TACCTTTTTGCGGCTGCGGAGCACAAAGCACGAGATTATGGTGGCGCCAG ACAAGGACTACATCTTGATCGTCATTCAGAACCCCCACTCGAAGTAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1053:15713..16009-

>mRNA_E-fasciculatus_F_contig1053.428.1 ID=mRNA_E-fasciculatus_F_contig1053.428.1|Name=mRNA_E-fasciculatus_F_contig1053.428.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=594bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1053:15713..16009- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTCGTCCGAGGTGGAGGAGACTCTCAAGCGAATCCAGTCACACCGGGG
GGTGAAGGGGGTGCTAATCTTGAACAACGATGGAATCCCTATTCGATCCA
ACCTCAGCCAAGAGGACACGGACACGTACTCGGCTTTGATCAGCCAGCTG
AGCTTCAAGGCAAATGGTATAGTACGAACGCTGGATGAGGCAGACAGCCT
TACCTTTTTGCGGCTGCGGAGCACAAAGCACGAGATTATGGTGGCGCCAG
ACAAGGACTACATCTTGATCGTCATTCAGAACCCCCACTCGAAGTAGATG
TCGTCCGAGGTGGAGGAGACTCTCAAGCGAATCCAGTCACACCGGGGGGT
GAAGGGGGTGCTAATCTTGAACAACGATGGAATCCCTATTCGATCCAACC
TCAGCCAAGAGGACACGGACACGTACTCGGCTTTGATCAGCCAGCTGAGC
TTCAAGGCAAATGGTATAGTACGAACGCTGGATGAGGCAGACAGCCTTAC
CTTTTTGCGGCTGCGGAGCACAAAGCACGAGATTATGGTGGCGCCAGACA
AGGACTACATCTTGATCGTCATTCAGAACCCCCACTCGAAGTAG
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