mRNA_E-fasciculatus_F_contig10523.422.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig10523.422.1 vs. uniprot
Match: D7FQD7_ECTSI (PAP_fibrillin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQD7_ECTSI) HSP 1 Score: 438 bits (1127), Expect = 2.950e-154 Identity = 227/235 (96.60%), Postives = 233/235 (99.15%), Query Frame = 1
Query: 1 VLVTRMSSVSTPADVDEVTLIKNSLLQVAAMTERGQLATEAQQNDMDLLVERLEELKAEELLEPYKDENMVGTWTLVYSSSQAFRSSPFFATFQALIGKEGVAERIFSFTDAFPNAKIGQARQIVNEDCTELLSRVEMSVWPHRWISGVVETRSKIVNDDIGDRLEVIVDDTKVSDSILGKISPRLEEVRVPVDQLSERLFDRIPRITLDTVFLDQDLRVSRLPDRNFLIYVKDY 705
VL TRMSSV TPADVDE+TLIKNSLLQVAAMTERGQLATEAQQNDMDLL+ERLEELKAEELLEPYKDENMVGTWTLVYSSSQAFRSSPFFATFQALIGK+GVAERIFSFTDAFPNAKIGQARQIVNEDCTELLSRVEMSVWPHRWISGVVETRSKIVNDDIGD+LEVIVDDT+VSDSILGKISPRLEEVRVPVDQLSERLFDRIPRITLDTVFLDQDLRVSRLPDRNFL+YVKDY
Sbjct: 49 VLTTRMSSVGTPADVDEITLIKNSLLQVAAMTERGQLATEAQQNDMDLLLERLEELKAEELLEPYKDENMVGTWTLVYSSSQAFRSSPFFATFQALIGKDGVAERIFSFTDAFPNAKIGQARQIVNEDCTELLSRVEMSVWPHRWISGVVETRSKIVNDDIGDQLEVIVDDTRVSDSILGKISPRLEEVRVPVDQLSERLFDRIPRITLDTVFLDQDLRVSRLPDRNFLVYVKDY 283
BLAST of mRNA_E-fasciculatus_F_contig10523.422.1 vs. uniprot
Match: A0A835ZIJ0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIJ0_9STRA) HSP 1 Score: 158 bits (400), Expect = 4.710e-45 Identity = 88/198 (44.44%), Postives = 127/198 (64.14%), Query Frame = 1
Query: 124 QQNDMDLLVERLEELKAEELLEPYKDENMVGTWTLVYSSSQAFRSSPFFATFQALIGKEGVAERIFSFTDAFPNAKIGQARQIV----NEDCTELLSRVEMSVWPHRWISGVVETRSKIVNDDIGDRLEVIVDDTKVSDSILGKISP-RLEEVRVPVDQLSERLFDRIPRITLDTVFLDQDLRVSRLPDRNFLIYVKD 702
Q++D++LLV RL+EL E EP+ ++M+G+WTLVYSS + FR P FA QAL G R++ A P A++G +Q + E + + + V+P ++ G +ET ++IVNDDIGD LEVIV+ + V++S L + P + VPV +LSER FDR+PR+ L+T++LD D RV+RLPD LIYVKD
Sbjct: 2 QRDDVELLVTRLQELVPAE--EPFNGDDMLGSWTLVYSSGEVFRGDPVFAHIQALAGNPLWPNRVYRMAGAMPTARVGTVQQTIAAGGEEGRCKRCLVIRLEVFPWNYLQGTIETEARIVNDDIGDGLEVIVERSAVTESPLTRFWPGKNGPPAVPVARLSERFFDRLPRLALETLYLDSDFRVTRLPDDTLLIYVKD 197
BLAST of mRNA_E-fasciculatus_F_contig10523.422.1 vs. uniprot
Match: A0A7S0WSZ6_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0WSZ6_9CHLO) HSP 1 Score: 110 bits (275), Expect = 8.540e-26 Identity = 85/231 (36.80%), Postives = 130/231 (56.28%), Query Frame = 1
Query: 16 MSSVSTPADVDEVTLIKNSLLQVAAMTERGQLATEAQQNDMDLLVERLEELKAEELLEPYKDENMVGTWTLVYSSSQAFRSSPFFATFQ-ALIGKEGVAERIFSFTDAFPNAKIGQARQIVNEDCTELLSRVEMSVWPHRWISGVVETRSKIVNDDIGDRLEVIVDDTKVSDSILGKISPRLEEVRVPVDQLSERLFDR-IPRITLDTVFLDQDLRVSRL-PDRNFLIYVK 699
+SSV+ +D +K LL+ A +RGQ+ATE+Q+ ++++++ +LE +A + E + G W LVY+S +AFRSSPFF FQ L+G E +A IF FTDA P A +GQA Q + + E +S V++ V+P G V T S + L + V++T+V+ S L + L+ V VPV + E + R ++ D FLD +LRV+R PD +Y K
Sbjct: 30 VSSVAVDSD------LKKVLLRHVAGIDRGQVATESQKQEIEMVISQLEASQAPMSEQLEVQEALQGKWQLVYTSVEAFRSSPFFWAFQEGLVGSEELASAIFKFTDAIPGATVGQAFQTFDFNTGECVSEVDLEVFPGA--KGCVVTTSTVRCSTPPTCLVLTVENTRVARSNL--LPFLLDSVVVPVKDVVEAVRGRGKTAVSADMTFLDGELRVARTRPDGAIFVYRK 250
BLAST of mRNA_E-fasciculatus_F_contig10523.422.1 vs. uniprot
Match: A0A7R9UZ95_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9UZ95_9CHLO) HSP 1 Score: 95.9 bits (237), Expect = 8.260e-21 Identity = 69/168 (41.07%), Postives = 94/168 (55.95%), Query Frame = 1
Query: 214 GTWTLVYSSSQAFRSSPFFATFQA--LIGKEGVAERIFSFTDAFPNAKIGQARQIVNEDCTELLSRVEMSVWPHRWI---SGVVETRSKIVNDDIGDRLEVIVDDTKVSDS-ILGKISPRLEEVRVPVDQLSERLFDR-IPRITLDTVFLDQDLRVSR-LPDRNFLIY 693
GTW LVYSS +AFRSSPFF FQ L G +A IF++TD+ P A IG ARQ ++ L+S V+++V P + SG V T I RL V V DT+VS S + G++ L+++ VPV + E L R + T +LD LRV R LP++ +Y
Sbjct: 29 GTWELVYSSVEAFRSSPFFWAFQEGLLAGNVNLASAIFAYTDSVPGATIGSARQTIDTSFGTLVSEVDLTVTPLPGLPGASGAVVTGCDIDASSGDGRLVVTVTDTRVSGSNVAGQL---LDQLSVPVKDIFEALRGSGAARTEVTTTYLDDTLRVMRVLPNKELFVY 193
BLAST of mRNA_E-fasciculatus_F_contig10523.422.1 vs. uniprot
Match: A0A0D2KT63_9CHLO (Uncharacterized protein n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2KT63_9CHLO) HSP 1 Score: 95.1 bits (235), Expect = 2.130e-19 Identity = 68/174 (39.08%), Postives = 98/174 (56.32%), Query Frame = 1
Query: 214 GTWTLVYSSSQAFRSSPFFATFQALI-------GKEG--------VAERIFSFTDAFPNAKIGQARQIVNEDCTELLSRVEMSVWPHRWISGVVETRSKIVNDDIGDR-------LEVIVDDTKVSDSILGKISPRLEEVRVPVDQLSERLF-DRIPRITLDTVFLDQDLRVSR 666
G W L+Y++++AFR+SPFFA+F ++ G G +A+ IF+FTDA P A IG A QI+ L+S V++SV+P + G V TRS++ LE+ V+ T+V S SP L++V VPV+QL ERL R+T + FLDQ+LRV+R
Sbjct: 163 GRWELLYANTEAFRNSPFFASFSNVVSGLADVAGLSGTIDVPNGALADAIFAFTDAIPGATIGAAYQIITPGA--LVSEVDLSVFPG--LRGTVVTRSRLERPATAGGAGGAPQVLELFVESTRVERS---NFSPLLDQVSVPVEQLIERLRGSEAARVTYEVTFLDQNLRVTR 329
BLAST of mRNA_E-fasciculatus_F_contig10523.422.1 vs. uniprot
Match: A0A6V1MSR7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1MSR7_HETAK) HSP 1 Score: 91.3 bits (225), Expect = 2.980e-18 Identity = 77/239 (32.22%), Postives = 127/239 (53.14%), Query Frame = 1
Query: 28 STPADVDEVTL---IKNSLLQVAAMTERGQLATEAQQNDMDLLVERLEELKAEELLEPYKDENMV---GTWTLVYSSSQAFRSSPFFATFQALIGKEGV-AERIFSFTD-AFPNAKIGQARQIVNEDCTELLSRVEMSVW-----PHRWISGVVETRSKIVNDDIGDRLEVIVDDTKVSDSILGKISPRLEEV--RVPVDQLSERLFDRIPRITLDTVFLDQDLRVSRLPDRNFLIYVK 699
S P ++VT +K+ ++ + A T RGQ+A+E ++ D++++ + +L++ + P N+ GTW LVYS + FRSSPFF + L G + A + FS A ++IG+ +QI+ + L+S V++ V P VV N D L+V V TKVS+S + K LE++ VPV + ERL +P + L+T +LD +R+SR D +F +Y++
Sbjct: 66 SPPESEEDVTYREKLKSEIIALGATTNRGQIASE---DEKDIVIDLVYQLES---MNPSPKTNIAASYGTWELVYSDVELFRSSPFFMAVRDLFGDDDEKASQAFSLHRLATSTSEIGKVKQILGP--STLVSEVDLKVGTIPSLPFAITGTVVSDAEVTANGD--QSLQVTVGKTKVSNSNILKFL-NLEDMGAAVPVKDVFERLRGSVPTVPLNTYYLDDTMRISRTQDEHFFVYIR 293
BLAST of mRNA_E-fasciculatus_F_contig10523.422.1 vs. uniprot
Match: K0SUV6_THAOC (PAP_fibrillin domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SUV6_THAOC) HSP 1 Score: 92.0 bits (227), Expect = 3.160e-18 Identity = 78/221 (35.29%), Postives = 121/221 (54.75%), Query Frame = 1
Query: 61 IKNSLLQVAAMTERGQLATEAQQNDMDLLVERLEELKAEELLEPYKDE--NMVGTWTLVYSSSQAFRSSPFFATFQALIGKEG--VAERIFSFTDAFPNA-KIGQARQIVNEDCTELLSRVEMSVW-----PHRWISGVVETRSKIVNDDIGDRLEVIVDDTKVSDSILGKISPRLEE--VRVPVDQLSERLFDR-IPRITLDTVFLDQDLRVSRLPDRNF 684
+K L+ +A+ T RGQ AT +QN L+++ + +L+A L P D N G W L YSS+Q+FRSSPFF +A +G + VAE FS D A ++G+ RQI++ TEL+S ++SV P R + G V T + + + + E+ V T+V S + I L++ V VPV ++ E + +P L T ++D+ +R+SR D NF
Sbjct: 76 LKRELILLASTTNRGQCATLEEQN---LVIDLVTQLEA---LNPTADPALNSQGDWELCYSSTQSFRSSPFFLAIRAFLGDDNKEVAENAFSIHDMATTASRVGKVRQIIDSYNTELISEYDLSVGVAPGLPVR-VKGCVVTSADL-SVSAPETWEMKVRGTRVKSSNVPFIDEWLDDSQVEVPVGRVYEAINGGDVPAAILKTYYVDEGMRISRDADENF 288
BLAST of mRNA_E-fasciculatus_F_contig10523.422.1 vs. uniprot
Match: A0A7S2Q3I4_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2Q3I4_9STRA) HSP 1 Score: 90.1 bits (222), Expect = 6.740e-18 Identity = 72/227 (31.72%), Postives = 125/227 (55.07%), Query Frame = 1
Query: 61 IKNSLLQVAAMTERGQLATEAQQNDMDLLVERLEELKAEELLEPYKDE--NMVGTWTLVYSSSQAFRSSPFFATFQALIGKEG--VAERIFSFTDAFPNA-KIGQARQIVNEDCTELLSRVEMSVW-----PHRWISGVVETRSK--IVNDDIGDRLEVIVDDTKVSDSILGKISPRLEE--VRVPVDQLSERLFDRIPRITLDTVFLDQDLRVSRLPDRNFLIYVK 699
+K L+ ++++T RG AT + N L+V+ + +L+A L P D N G W L YSS+Q+FRSSPFF ++ +G + +AE F DA A ++G+ RQI++++ EL+S E+SV P + + G V T ++ ++ + E+ V TKV S + + L++ + VPV + + + +P TL T ++D+ LR++R D NF ++ +
Sbjct: 66 LKRELILLSSVTNRGSCATTEESN---LVVDLVTQLEA---LNPTADPAANCQGDWELCYSSTQSFRSSPFFLAIRSFLGDDNKQIAESAFDIHDAATTASRVGKVRQIIDKNNNELVSEYEVSVGLLPGLPVQ-VKGTVITSAEMSVIRPE---SWELEVKGTKVKGSNVPFLDAFLDDSDLEVPVGEAYKAVSGAVPVSTLKTFYVDEGLRITRDVDENFYVFTR 282
BLAST of mRNA_E-fasciculatus_F_contig10523.422.1 vs. uniprot
Match: A0A1X6P059_PORUM (PAP_fibrillin domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P059_PORUM) HSP 1 Score: 90.9 bits (224), Expect = 8.830e-18 Identity = 71/217 (32.72%), Postives = 113/217 (52.07%), Query Frame = 1
Query: 55 TLIKNSLLQVAAMTERGQLATEAQQNDMDLLVERLEELKAEELLEPYKDENMVGTWTLVYSSSQAFRSSPFFATFQALIGKEGVAERIFSFTDAFPNAKIGQARQIVNEDCTELLSRVEMSVWPHRWISGVVETRSKIVNDDIGDRLEVIVDDTKVSD-SILGKISPRLEEVRVPVDQLSERLFD-RIPRITLDTVFLDQDLRVSRLPDRNFLIYVK 699
T +K LL++AA T+RGQLAT AQ+ ++ LV LE + P + GTW LVY+S F+++P A P +GQ +Q++ D EL++ VE++ +P I+G V T ++ V G+RLE++V+ T V S+ GK+ +PV+QL +L + +P LDT +LD+ +R+SR + +Y K
Sbjct: 160 TEMKGKLLEIAAATDRGQLATSAQKEAVEDLVSMLEAANPTD--SPVDTALIDGTWLLVYASKPLFKTTPLL------------------LAAATPLLVVGQVKQMLRVDSGELVNDVEVTAFP--MITGTVSTTAR-VTPITGERLELVVEKTGVKGKSLAGKLDLGGLGGSLPVEQLYGKLKNGAVPETFLDTFYLDEKMRISRGKGGSIYVYTK 353
BLAST of mRNA_E-fasciculatus_F_contig10523.422.1 vs. uniprot
Match: B8BQA8_THAPS (PAP_fibrillin domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BQA8_THAPS) HSP 1 Score: 89.4 bits (220), Expect = 1.740e-17 Identity = 73/225 (32.44%), Postives = 122/225 (54.22%), Query Frame = 1
Query: 61 IKNSLLQVAAMTERGQLATEAQQNDMDLLVERLEELKAEELLEPYKDE--NMVGTWTLVYSSSQAFRSSPFFATFQALIGK--EGVAERIFSFTDAFPNA-KIGQARQIVNEDCTELLSRVEMSVW-----PHRWISGVVETRSKIVNDDIGDRLEVIVDDTKVSDSILGKISPRLEE--VRVPVDQLSERLFDRIPRITLDTVFLDQDLRVSRLPDRNFLIYVK 699
+K LL ++++T RGQ A++ ++N L+V+ + +L+A L P D N G W L YSS+Q+FRSSPFF ++ +G+ + +AE F D A ++G+ RQIV+ EL+S E+SV P R + G V T S + + E+ V TKV S + L++ + +PV + + + +P L T ++D+ +R+SR D NF ++ +
Sbjct: 86 LKRELLLLSSVTNRGQCASQEEEN---LVVDLVTQLEA---LNPTADPALNSQGDWELCYSSTQSFRSSPFFLAIRSFMGESNKSMAENAFDIHDRATTASRVGKVRQIVDAGNMELISEYELSVGLLPGLPVR-VKGTVIT-SADMRAIAPETWELTVKATKVKGSNVPFFDQYLDDSGLELPVGEAYKAISGSVPVSVLKTFYVDEGMRISRDVDDNFFVFTR 302 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10523.422.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig10523.422.1 >prot_E-fasciculatus_F_contig10523.422.1 ID=prot_E-fasciculatus_F_contig10523.422.1|Name=mRNA_E-fasciculatus_F_contig10523.422.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=231bp MSSVSTPADVDEVTLIKNSLLQVAAMTERGQLATEAQQNDMDLLVERLEEback to top mRNA from alignment at E-fasciculatus_F_contig10523:651..2892+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig10523.422.1 ID=mRNA_E-fasciculatus_F_contig10523.422.1|Name=mRNA_E-fasciculatus_F_contig10523.422.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2242bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10523:651..2892+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10523:651..2892+ >mRNA_E-fasciculatus_F_contig10523.422.1 ID=mRNA_E-fasciculatus_F_contig10523.422.1|Name=mRNA_E-fasciculatus_F_contig10523.422.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1386bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10523:651..2892+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |