mRNA_E-fasciculatus_F_contig10523.422.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig10523.422.1
Unique NamemRNA_E-fasciculatus_F_contig10523.422.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig10523.422.1 vs. uniprot
Match: D7FQD7_ECTSI (PAP_fibrillin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQD7_ECTSI)

HSP 1 Score: 438 bits (1127), Expect = 2.950e-154
Identity = 227/235 (96.60%), Postives = 233/235 (99.15%), Query Frame = 1
Query:    1 VLVTRMSSVSTPADVDEVTLIKNSLLQVAAMTERGQLATEAQQNDMDLLVERLEELKAEELLEPYKDENMVGTWTLVYSSSQAFRSSPFFATFQALIGKEGVAERIFSFTDAFPNAKIGQARQIVNEDCTELLSRVEMSVWPHRWISGVVETRSKIVNDDIGDRLEVIVDDTKVSDSILGKISPRLEEVRVPVDQLSERLFDRIPRITLDTVFLDQDLRVSRLPDRNFLIYVKDY 705
            VL TRMSSV TPADVDE+TLIKNSLLQVAAMTERGQLATEAQQNDMDLL+ERLEELKAEELLEPYKDENMVGTWTLVYSSSQAFRSSPFFATFQALIGK+GVAERIFSFTDAFPNAKIGQARQIVNEDCTELLSRVEMSVWPHRWISGVVETRSKIVNDDIGD+LEVIVDDT+VSDSILGKISPRLEEVRVPVDQLSERLFDRIPRITLDTVFLDQDLRVSRLPDRNFL+YVKDY
Sbjct:   49 VLTTRMSSVGTPADVDEITLIKNSLLQVAAMTERGQLATEAQQNDMDLLLERLEELKAEELLEPYKDENMVGTWTLVYSSSQAFRSSPFFATFQALIGKDGVAERIFSFTDAFPNAKIGQARQIVNEDCTELLSRVEMSVWPHRWISGVVETRSKIVNDDIGDQLEVIVDDTRVSDSILGKISPRLEEVRVPVDQLSERLFDRIPRITLDTVFLDQDLRVSRLPDRNFLVYVKDY 283          
BLAST of mRNA_E-fasciculatus_F_contig10523.422.1 vs. uniprot
Match: A0A835ZIJ0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIJ0_9STRA)

HSP 1 Score: 158 bits (400), Expect = 4.710e-45
Identity = 88/198 (44.44%), Postives = 127/198 (64.14%), Query Frame = 1
Query:  124 QQNDMDLLVERLEELKAEELLEPYKDENMVGTWTLVYSSSQAFRSSPFFATFQALIGKEGVAERIFSFTDAFPNAKIGQARQIV----NEDCTELLSRVEMSVWPHRWISGVVETRSKIVNDDIGDRLEVIVDDTKVSDSILGKISP-RLEEVRVPVDQLSERLFDRIPRITLDTVFLDQDLRVSRLPDRNFLIYVKD 702
            Q++D++LLV RL+EL   E  EP+  ++M+G+WTLVYSS + FR  P FA  QAL G      R++    A P A++G  +Q +     E   +    + + V+P  ++ G +ET ++IVNDDIGD LEVIV+ + V++S L +  P +     VPV +LSER FDR+PR+ L+T++LD D RV+RLPD   LIYVKD
Sbjct:    2 QRDDVELLVTRLQELVPAE--EPFNGDDMLGSWTLVYSSGEVFRGDPVFAHIQALAGNPLWPNRVYRMAGAMPTARVGTVQQTIAAGGEEGRCKRCLVIRLEVFPWNYLQGTIETEARIVNDDIGDGLEVIVERSAVTESPLTRFWPGKNGPPAVPVARLSERFFDRLPRLALETLYLDSDFRVTRLPDDTLLIYVKD 197          
BLAST of mRNA_E-fasciculatus_F_contig10523.422.1 vs. uniprot
Match: A0A7S0WSZ6_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0WSZ6_9CHLO)

HSP 1 Score: 110 bits (275), Expect = 8.540e-26
Identity = 85/231 (36.80%), Postives = 130/231 (56.28%), Query Frame = 1
Query:   16 MSSVSTPADVDEVTLIKNSLLQVAAMTERGQLATEAQQNDMDLLVERLEELKAEELLEPYKDENMVGTWTLVYSSSQAFRSSPFFATFQ-ALIGKEGVAERIFSFTDAFPNAKIGQARQIVNEDCTELLSRVEMSVWPHRWISGVVETRSKIVNDDIGDRLEVIVDDTKVSDSILGKISPRLEEVRVPVDQLSERLFDR-IPRITLDTVFLDQDLRVSRL-PDRNFLIYVK 699
            +SSV+  +D      +K  LL+  A  +RGQ+ATE+Q+ ++++++ +LE  +A    +    E + G W LVY+S +AFRSSPFF  FQ  L+G E +A  IF FTDA P A +GQA Q  + +  E +S V++ V+P     G V T S +        L + V++T+V+ S L  +   L+ V VPV  + E +  R    ++ D  FLD +LRV+R  PD    +Y K
Sbjct:   30 VSSVAVDSD------LKKVLLRHVAGIDRGQVATESQKQEIEMVISQLEASQAPMSEQLEVQEALQGKWQLVYTSVEAFRSSPFFWAFQEGLVGSEELASAIFKFTDAIPGATVGQAFQTFDFNTGECVSEVDLEVFPGA--KGCVVTTSTVRCSTPPTCLVLTVENTRVARSNL--LPFLLDSVVVPVKDVVEAVRGRGKTAVSADMTFLDGELRVARTRPDGAIFVYRK 250          
BLAST of mRNA_E-fasciculatus_F_contig10523.422.1 vs. uniprot
Match: A0A7R9UZ95_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9UZ95_9CHLO)

HSP 1 Score: 95.9 bits (237), Expect = 8.260e-21
Identity = 69/168 (41.07%), Postives = 94/168 (55.95%), Query Frame = 1
Query:  214 GTWTLVYSSSQAFRSSPFFATFQA--LIGKEGVAERIFSFTDAFPNAKIGQARQIVNEDCTELLSRVEMSVWPHRWI---SGVVETRSKIVNDDIGDRLEVIVDDTKVSDS-ILGKISPRLEEVRVPVDQLSERLFDR-IPRITLDTVFLDQDLRVSR-LPDRNFLIY 693
            GTW LVYSS +AFRSSPFF  FQ   L G   +A  IF++TD+ P A IG ARQ ++     L+S V+++V P   +   SG V T   I       RL V V DT+VS S + G++   L+++ VPV  + E L      R  + T +LD  LRV R LP++   +Y
Sbjct:   29 GTWELVYSSVEAFRSSPFFWAFQEGLLAGNVNLASAIFAYTDSVPGATIGSARQTIDTSFGTLVSEVDLTVTPLPGLPGASGAVVTGCDIDASSGDGRLVVTVTDTRVSGSNVAGQL---LDQLSVPVKDIFEALRGSGAARTEVTTTYLDDTLRVMRVLPNKELFVY 193          
BLAST of mRNA_E-fasciculatus_F_contig10523.422.1 vs. uniprot
Match: A0A0D2KT63_9CHLO (Uncharacterized protein n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2KT63_9CHLO)

HSP 1 Score: 95.1 bits (235), Expect = 2.130e-19
Identity = 68/174 (39.08%), Postives = 98/174 (56.32%), Query Frame = 1
Query:  214 GTWTLVYSSSQAFRSSPFFATFQALI-------GKEG--------VAERIFSFTDAFPNAKIGQARQIVNEDCTELLSRVEMSVWPHRWISGVVETRSKIVNDDIGDR-------LEVIVDDTKVSDSILGKISPRLEEVRVPVDQLSERLF-DRIPRITLDTVFLDQDLRVSR 666
            G W L+Y++++AFR+SPFFA+F  ++       G  G        +A+ IF+FTDA P A IG A QI+      L+S V++SV+P   + G V TRS++               LE+ V+ T+V  S     SP L++V VPV+QL ERL      R+T +  FLDQ+LRV+R
Sbjct:  163 GRWELLYANTEAFRNSPFFASFSNVVSGLADVAGLSGTIDVPNGALADAIFAFTDAIPGATIGAAYQIITPGA--LVSEVDLSVFPG--LRGTVVTRSRLERPATAGGAGGAPQVLELFVESTRVERS---NFSPLLDQVSVPVEQLIERLRGSEAARVTYEVTFLDQNLRVTR 329          
BLAST of mRNA_E-fasciculatus_F_contig10523.422.1 vs. uniprot
Match: A0A6V1MSR7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1MSR7_HETAK)

HSP 1 Score: 91.3 bits (225), Expect = 2.980e-18
Identity = 77/239 (32.22%), Postives = 127/239 (53.14%), Query Frame = 1
Query:   28 STPADVDEVTL---IKNSLLQVAAMTERGQLATEAQQNDMDLLVERLEELKAEELLEPYKDENMV---GTWTLVYSSSQAFRSSPFFATFQALIGKEGV-AERIFSFTD-AFPNAKIGQARQIVNEDCTELLSRVEMSVW-----PHRWISGVVETRSKIVNDDIGDRLEVIVDDTKVSDSILGKISPRLEEV--RVPVDQLSERLFDRIPRITLDTVFLDQDLRVSRLPDRNFLIYVK 699
            S P   ++VT    +K+ ++ + A T RGQ+A+E   ++ D++++ + +L++   + P    N+    GTW LVYS  + FRSSPFF   + L G +   A + FS    A   ++IG+ +QI+    + L+S V++ V      P      VV       N D    L+V V  TKVS+S + K    LE++   VPV  + ERL   +P + L+T +LD  +R+SR  D +F +Y++
Sbjct:   66 SPPESEEDVTYREKLKSEIIALGATTNRGQIASE---DEKDIVIDLVYQLES---MNPSPKTNIAASYGTWELVYSDVELFRSSPFFMAVRDLFGDDDEKASQAFSLHRLATSTSEIGKVKQILGP--STLVSEVDLKVGTIPSLPFAITGTVVSDAEVTANGD--QSLQVTVGKTKVSNSNILKFL-NLEDMGAAVPVKDVFERLRGSVPTVPLNTYYLDDTMRISRTQDEHFFVYIR 293          
BLAST of mRNA_E-fasciculatus_F_contig10523.422.1 vs. uniprot
Match: K0SUV6_THAOC (PAP_fibrillin domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SUV6_THAOC)

HSP 1 Score: 92.0 bits (227), Expect = 3.160e-18
Identity = 78/221 (35.29%), Postives = 121/221 (54.75%), Query Frame = 1
Query:   61 IKNSLLQVAAMTERGQLATEAQQNDMDLLVERLEELKAEELLEPYKDE--NMVGTWTLVYSSSQAFRSSPFFATFQALIGKEG--VAERIFSFTDAFPNA-KIGQARQIVNEDCTELLSRVEMSVW-----PHRWISGVVETRSKIVNDDIGDRLEVIVDDTKVSDSILGKISPRLEE--VRVPVDQLSERLFDR-IPRITLDTVFLDQDLRVSRLPDRNF 684
            +K  L+ +A+ T RGQ AT  +QN   L+++ + +L+A   L P  D   N  G W L YSS+Q+FRSSPFF   +A +G +   VAE  FS  D    A ++G+ RQI++   TEL+S  ++SV      P R + G V T + + +    +  E+ V  T+V  S +  I   L++  V VPV ++ E +    +P   L T ++D+ +R+SR  D NF
Sbjct:   76 LKRELILLASTTNRGQCATLEEQN---LVIDLVTQLEA---LNPTADPALNSQGDWELCYSSTQSFRSSPFFLAIRAFLGDDNKEVAENAFSIHDMATTASRVGKVRQIIDSYNTELISEYDLSVGVAPGLPVR-VKGCVVTSADL-SVSAPETWEMKVRGTRVKSSNVPFIDEWLDDSQVEVPVGRVYEAINGGDVPAAILKTYYVDEGMRISRDADENF 288          
BLAST of mRNA_E-fasciculatus_F_contig10523.422.1 vs. uniprot
Match: A0A7S2Q3I4_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2Q3I4_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 6.740e-18
Identity = 72/227 (31.72%), Postives = 125/227 (55.07%), Query Frame = 1
Query:   61 IKNSLLQVAAMTERGQLATEAQQNDMDLLVERLEELKAEELLEPYKDE--NMVGTWTLVYSSSQAFRSSPFFATFQALIGKEG--VAERIFSFTDAFPNA-KIGQARQIVNEDCTELLSRVEMSVW-----PHRWISGVVETRSK--IVNDDIGDRLEVIVDDTKVSDSILGKISPRLEE--VRVPVDQLSERLFDRIPRITLDTVFLDQDLRVSRLPDRNFLIYVK 699
            +K  L+ ++++T RG  AT  + N   L+V+ + +L+A   L P  D   N  G W L YSS+Q+FRSSPFF   ++ +G +   +AE  F   DA   A ++G+ RQI++++  EL+S  E+SV      P + + G V T ++  ++  +     E+ V  TKV  S +  +   L++  + VPV +  + +   +P  TL T ++D+ LR++R  D NF ++ +
Sbjct:   66 LKRELILLSSVTNRGSCATTEESN---LVVDLVTQLEA---LNPTADPAANCQGDWELCYSSTQSFRSSPFFLAIRSFLGDDNKQIAESAFDIHDAATTASRVGKVRQIIDKNNNELVSEYEVSVGLLPGLPVQ-VKGTVITSAEMSVIRPE---SWELEVKGTKVKGSNVPFLDAFLDDSDLEVPVGEAYKAVSGAVPVSTLKTFYVDEGLRITRDVDENFYVFTR 282          
BLAST of mRNA_E-fasciculatus_F_contig10523.422.1 vs. uniprot
Match: A0A1X6P059_PORUM (PAP_fibrillin domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P059_PORUM)

HSP 1 Score: 90.9 bits (224), Expect = 8.830e-18
Identity = 71/217 (32.72%), Postives = 113/217 (52.07%), Query Frame = 1
Query:   55 TLIKNSLLQVAAMTERGQLATEAQQNDMDLLVERLEELKAEELLEPYKDENMVGTWTLVYSSSQAFRSSPFFATFQALIGKEGVAERIFSFTDAFPNAKIGQARQIVNEDCTELLSRVEMSVWPHRWISGVVETRSKIVNDDIGDRLEVIVDDTKVSD-SILGKISPRLEEVRVPVDQLSERLFD-RIPRITLDTVFLDQDLRVSRLPDRNFLIYVK 699
            T +K  LL++AA T+RGQLAT AQ+  ++ LV  LE     +   P     + GTW LVY+S   F+++P                       A P   +GQ +Q++  D  EL++ VE++ +P   I+G V T ++ V    G+RLE++V+ T V   S+ GK+        +PV+QL  +L +  +P   LDT +LD+ +R+SR    +  +Y K
Sbjct:  160 TEMKGKLLEIAAATDRGQLATSAQKEAVEDLVSMLEAANPTD--SPVDTALIDGTWLLVYASKPLFKTTPLL------------------LAAATPLLVVGQVKQMLRVDSGELVNDVEVTAFP--MITGTVSTTAR-VTPITGERLELVVEKTGVKGKSLAGKLDLGGLGGSLPVEQLYGKLKNGAVPETFLDTFYLDEKMRISRGKGGSIYVYTK 353          
BLAST of mRNA_E-fasciculatus_F_contig10523.422.1 vs. uniprot
Match: B8BQA8_THAPS (PAP_fibrillin domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BQA8_THAPS)

HSP 1 Score: 89.4 bits (220), Expect = 1.740e-17
Identity = 73/225 (32.44%), Postives = 122/225 (54.22%), Query Frame = 1
Query:   61 IKNSLLQVAAMTERGQLATEAQQNDMDLLVERLEELKAEELLEPYKDE--NMVGTWTLVYSSSQAFRSSPFFATFQALIGK--EGVAERIFSFTDAFPNA-KIGQARQIVNEDCTELLSRVEMSVW-----PHRWISGVVETRSKIVNDDIGDRLEVIVDDTKVSDSILGKISPRLEE--VRVPVDQLSERLFDRIPRITLDTVFLDQDLRVSRLPDRNFLIYVK 699
            +K  LL ++++T RGQ A++ ++N   L+V+ + +L+A   L P  D   N  G W L YSS+Q+FRSSPFF   ++ +G+  + +AE  F   D    A ++G+ RQIV+    EL+S  E+SV      P R + G V T S  +     +  E+ V  TKV  S +      L++  + +PV +  + +   +P   L T ++D+ +R+SR  D NF ++ +
Sbjct:   86 LKRELLLLSSVTNRGQCASQEEEN---LVVDLVTQLEA---LNPTADPALNSQGDWELCYSSTQSFRSSPFFLAIRSFMGESNKSMAENAFDIHDRATTASRVGKVRQIVDAGNMELISEYELSVGLLPGLPVR-VKGTVIT-SADMRAIAPETWELTVKATKVKGSNVPFFDQYLDDSGLELPVGEAYKAISGSVPVSVLKTFYVDEGMRISRDVDDNFFVFTR 302          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10523.422.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQD7_ECTSI2.950e-15496.60PAP_fibrillin domain-containing protein n=2 Tax=Ec... [more]
A0A835ZIJ0_9STRA4.710e-4544.44Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S0WSZ6_9CHLO8.540e-2636.80Hypothetical protein n=1 Tax=Chlamydomonas leiostr... [more]
A0A7R9UZ95_9CHLO8.260e-2141.07Hypothetical protein n=1 Tax=Chlamydomonas euryale... [more]
A0A0D2KT63_9CHLO2.130e-1939.08Uncharacterized protein n=1 Tax=Monoraphidium negl... [more]
A0A6V1MSR7_HETAK2.980e-1832.22Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
K0SUV6_THAOC3.160e-1835.29PAP_fibrillin domain-containing protein n=1 Tax=Th... [more]
A0A7S2Q3I4_9STRA6.740e-1831.72Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A1X6P059_PORUM8.830e-1832.72PAP_fibrillin domain-containing protein n=1 Tax=Po... [more]
B8BQA8_THAPS1.740e-1732.44PAP_fibrillin domain-containing protein n=1 Tax=Th... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10523contigE-fasciculatus_F_contig10523:651..2892 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score437.6
Seed ortholog evalue3.7e-120
Seed eggNOG ortholog2880.D7FQD7
EggNOG free text desc.PAP_fibrillin
EggNOG OGs2CY64@1,2S2BE@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPlastid lipid-associated protein/fibrillin conserved domain
Ec32 orthologEc-01_006500.1
Exons4
Model size708
Cds size693
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10523.422.1prot_E-fasciculatus_F_contig10523.422.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig10523 666..2892 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927551.1924098-UTR-E-fasciculatus_F_contig10523:650..6651622927551.1924098-UTR-E-fasciculatus_F_contig10523:650..665Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10523 651..665 +
1695995591.2232842-UTR-E-fasciculatus_F_contig10523:650..6651695995591.2232842-UTR-E-fasciculatus_F_contig10523:650..665Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10523 651..665 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927551.2413433-CDS-E-fasciculatus_F_contig10523:665..7311622927551.2413433-CDS-E-fasciculatus_F_contig10523:665..731Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10523 666..731 +
1695995591.234506-CDS-E-fasciculatus_F_contig10523:665..7311695995591.234506-CDS-E-fasciculatus_F_contig10523:665..731Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10523 666..731 +
1622927551.252269-CDS-E-fasciculatus_F_contig10523:1089..14391622927551.252269-CDS-E-fasciculatus_F_contig10523:1089..1439Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10523 1090..1439 +
1695995591.247484-CDS-E-fasciculatus_F_contig10523:1089..14391695995591.247484-CDS-E-fasciculatus_F_contig10523:1089..1439Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10523 1090..1439 +
1622927551.2636783-CDS-E-fasciculatus_F_contig10523:2020..21851622927551.2636783-CDS-E-fasciculatus_F_contig10523:2020..2185Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10523 2021..2185 +
1695995591.2623513-CDS-E-fasciculatus_F_contig10523:2020..21851695995591.2623513-CDS-E-fasciculatus_F_contig10523:2020..2185Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10523 2021..2185 +
1622927551.277489-CDS-E-fasciculatus_F_contig10523:2780..28921622927551.277489-CDS-E-fasciculatus_F_contig10523:2780..2892Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10523 2781..2892 +
1695995591.2795475-CDS-E-fasciculatus_F_contig10523:2780..28921695995591.2795475-CDS-E-fasciculatus_F_contig10523:2780..2892Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10523 2781..2892 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig10523.422.1

>prot_E-fasciculatus_F_contig10523.422.1 ID=prot_E-fasciculatus_F_contig10523.422.1|Name=mRNA_E-fasciculatus_F_contig10523.422.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=231bp
MSSVSTPADVDEVTLIKNSLLQVAAMTERGQLATEAQQNDMDLLVERLEE
LKAEELLEPYKDENMVGTWTLVYSSSQAFRSSPFFATFQALIGKEGVAER
IFSFTDAFPNAKIGQARQIVNEDCTELLSRVEMSVWPHRWISGVVETRSK
IVNDDIGDRLEVIVDDTKVSDSILGKISPRLEEVRVPVDQLSERLFDRIP
RITLDTVFLDQDLRVSRLPDRNFLIYVKDY*
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mRNA from alignment at E-fasciculatus_F_contig10523:651..2892+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig10523.422.1 ID=mRNA_E-fasciculatus_F_contig10523.422.1|Name=mRNA_E-fasciculatus_F_contig10523.422.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2242bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10523:651..2892+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTACTGGTCACACGCATGAGCTCGGTGAGCACACCAGCTGATGTCGACGA GGTCACTCTCATCAAAAACTCTCTGCTCCAGGTTAGTGCGGACGTCTAGC GGTAGTTTCTAGCGCCAAGCACGAGCTTGATATTCACGAGAATCATGGCT ATTTTAGTCTTGGCCAACTACGTCGAACGAGCGAAAGGTAGAGAGACGAA ACCCGAAGGAGAACTAACGAAACAGAAGTTGATCGGCCTTGATCGGTGCC CATGGGTGACGAATGAACGGAGGGATCAGAGAGCTGAGGCCGCGCTCTCG GTACCATGCTTGTCCACACGGACGGGTCACGGCCGAATCCAGAGCCACCA AGCATAATATATGTGGGAACATCTCCTAAACAGCCTCTTTTCTTCATAGA GGTGAGTTCTCCGGTGCTCAACGCTCCGACCCCCAAAAGGTGGCGGCGAT GACCGAGCGAGGGCAGCTGGCGACGGAGGCCCAGCAAAACGACATGGACC TCTTGGTGGAGCGCCTGGAAGAGCTAAAGGCGGAGGAGCTGCTGGAGCCC TACAAGGACGAGAACATGGTGGGGACTTGGACGCTCGTGTACTCGTCCTC GCAGGCGTTCCGCTCCAGCCCGTTCTTCGCAACGTTCCAGGCGCTGATCG GCAAGGAGGGCGTCGCTGAGAGGATCTTTTCCTTCACCGACGCGTTTCCC AACGCCAAGATCGGACAGGCGAGGCAGATCGTGAACGAGGACTGCACCGA GCTCCTGTCGCGGGTGGAGATGTCGGTCTGGCCTCACAGGTGATTCAGAT GTGATGGGAGGGAGATGGAGAGACAGGGGCTGTGTCGATACGCCCCTGAG CCCCGTGGTTCTGTGTGCGAGTGCAGCGCATGCGGGGTATGTATCCGACA TAACTTCTCCGGTAATTCACGAGATCAATGCCAGGCGCGTGCAGTGCTGG GAGCACAGCATTATTTGTTACCCTAGGTGTTCGCGTTCACACTTCACACG TGCTTGTTTCGATGTCCACCGTGACGTTTTCATTTTGATCGTTGGCCGTA AGAGAACCGCCTGCTAGGCCACCCCCAACATCTCTATCCGAGACGAGCAT CTCCATTGCCCCCCTTGATTTATTTCTCCATTAACATGGCACGAATGGCA ACGATATTGTACACCTTGTCCCCACCAATACCGGCGTCAACTAGACAAAC ATTTCCTCGACACCAAGTTGCTGACGACGACGACAACAGCCCACGCACTC ACCGACCAAGCCAGCCAGCCACCGAACTCGGACGTTTTTTGCTCAATCAG CGATCGTACCCGCCTCTTTTTGTTGTTTGTTTTTTTGTCATCTTGGGTGA CACTTCGCGCGGTTTTCAAGATGGATATCGGGCGTAGTGGAGACGCGGTC CAAGATCGTGAATGACGACATCGGCGACCGATTGGAGGTTATCGTCGACG ACACCAAGGTTAGCGATTCCATCCTGGGCAAGATCAGCCCTCGTCTCGAG GAGGTGCGAGTGCCGGTCGACCAGCTCTCAGAGAGGTCAGTGAGGGATTC ACCGGGGTAGGCAGCGAAGTAGGGGTGGTGGGGGGGTGCTCGCAAAGTGT CGGAGGTATTCAAGAGTTTCTTCGGTGAAATAAAACCGCCCGGGAGTTGG ACGGTCAGAACATTAGGCCGTGGCATCTCCGGTCACCGGAGATTCGGGGA AACACGGACTCAGGGCATGGACTGATGGACGATTAGTCTATTTTGGCCTA TATGACCTTTCGATACTTTGTCTTTGCATACACGGGGCTGGGAGTCAAGT CTTGAACGAGAATTTCCTCCGCAAATGCTATTACCCAGCTCTGGCGAATG TGTCTAAGACAGTTGGAGCTCTGGTCTCGGTCTCCATTATGCACCATGGA CGGCTTTTTCTCGCAATCCTACTTCGTAATTTTTCGTTTGTCTCTGCACT CGGGCATCTCTTTCTTGGGGGAGCAATGTCGGATTGGGGTACTTGAGGCA GAACAGAGCTTTAGCCGCCGCCAAGGCACATTCGGGACAGTCTCGTACGT AGTTCTCGACCAATCAGTTGGCGATTCTCTCGCTTGAATGCCTCCCGACC CTGCCGTAACTGCCCACCCCACCCACGCAGACTATTCGACCGCATACCCC GCATCACGCTGGACACGGTGTTCCTTGATCAAGATCTACGCGTGTCTCGC CTCCCGGATAGAAATTTCCTGATCTACGTCAAGGACTACTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10523:651..2892+

>mRNA_E-fasciculatus_F_contig10523.422.1 ID=mRNA_E-fasciculatus_F_contig10523.422.1|Name=mRNA_E-fasciculatus_F_contig10523.422.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1386bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10523:651..2892+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAGCTCGGTGAGCACACCAGCTGATGTCGACGAGGTCACTCTCATCAA
AAACTCTCTGCTCCAGATGAGCTCGGTGAGCACACCAGCTGATGTCGACG
AGGTCACTCTCATCAAAAACTCTCTGCTCCAGGTGGCGGCGATGACCGAG
CGAGGGCAGCTGGCGACGGAGGCCCAGCAAAACGACATGGACCTCTTGGT
GGAGCGCCTGGAAGAGCTAAAGGCGGAGGAGCTGCTGGAGCCCTACAAGG
ACGAGAACATGGTGGGGACTTGGACGCTCGTGTACTCGTCCTCGCAGGCG
TTCCGCTCCAGCCCGTTCTTCGCAACGTTCCAGGCGCTGATCGGCAAGGA
GGGCGTCGCTGAGAGGATCTTTTCCTTCACCGACGCGTTTCCCAACGCCA
AGATCGGACAGGCGAGGCAGATCGTGAACGAGGACTGCACCGAGCTCCTG
TCGCGGGTGGAGATGTCGGTCTGGCCTCACAGGTGGCGGCGATGACCGAG
CGAGGGCAGCTGGCGACGGAGGCCCAGCAAAACGACATGGACCTCTTGGT
GGAGCGCCTGGAAGAGCTAAAGGCGGAGGAGCTGCTGGAGCCCTACAAGG
ACGAGAACATGGTGGGGACTTGGACGCTCGTGTACTCGTCCTCGCAGGCG
TTCCGCTCCAGCCCGTTCTTCGCAACGTTCCAGGCGCTGATCGGCAAGGA
GGGCGTCGCTGAGAGGATCTTTTCCTTCACCGACGCGTTTCCCAACGCCA
AGATCGGACAGGCGAGGCAGATCGTGAACGAGGACTGCACCGAGCTCCTG
TCGCGGGTGGAGATGTCGGTCTGGCCTCACAGATGGATATCGGGCGTAGT
GGAGACGCGGTCCAAGATCGTGAATGACGACATCGGCGACCGATTGGAGG
TTATCGTCGACGACACCAAGGTTAGCGATTCCATCCTGGGCAAGATCAGC
CCTCGTCTCGAGGAGGTGCGAGTGCCGGTCGACCAGCTCTCAGAGAGATG
GATATCGGGCGTAGTGGAGACGCGGTCCAAGATCGTGAATGACGACATCG
GCGACCGATTGGAGGTTATCGTCGACGACACCAAGGTTAGCGATTCCATC
CTGGGCAAGATCAGCCCTCGTCTCGAGGAGGTGCGAGTGCCGGTCGACCA
GCTCTCAGAGAGACTATTCGACCGCATACCCCGCATCACGCTGGACACGG
TGTTCCTTGATCAAGATCTACGCGTGTCTCGCCTCCCGGATAGAAATTTC
CTGATCTACGTCAAGGACTACTGAACTATTCGACCGCATACCCCGCATCA
CGCTGGACACGGTGTTCCTTGATCAAGATCTACGCGTGTCTCGCCTCCCG
GATAGAAATTTCCTGATCTACGTCAAGGACTACTGA
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