mRNA_E-fasciculatus_F_contig10495.396.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig10495.396.1
Unique NamemRNA_E-fasciculatus_F_contig10495.396.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig10495.396.1 vs. uniprot
Match: D7G9G3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9G3_ECTSI)

HSP 1 Score: 161 bits (408), Expect = 4.100e-47
Identity = 89/116 (76.72%), Postives = 94/116 (81.03%), Query Frame = 3 
Query:   54 MATTLSGCWQWWPMRRARRSERETSRGVSHRVKSRFTTVRMPAQVPSAGPAGGGKPHSPSDGGGEEKRTSSASCVVEGAVAGLETVKDGEGATGKH-APQKDDGDSQPAAAVAVKV 398
            MATT SGCW WWPMRRARRSERE  RGVS +VKSRFTTVRMPAQV SAGPAGGGKPHSP  GG   +  SSAS    GAVAGLET +DGE + GKH + QKDDGDSQPAAAVAVKV
Sbjct:    1 MATTFSGCWPWWPMRRARRSEREAPRGVSRKVKSRFTTVRMPAQVSSAGPAGGGKPHSPCGGGSGGEEKSSASYAAVGAVAGLETGRDGESSGGKHPSQQKDDGDSQPAAAVAVKV 116
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BLAST of mRNA_E-fasciculatus_F_contig10495.396.1 vs. uniprot
Match: A0A6H5KGG6_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGG6_9PHAE)

HSP 1 Score: 161 bits (408), Expect = 2.610e-42
Identity = 93/119 (78.15%), Postives = 100/119 (84.03%), Query Frame = 3 
Query:   54 MATTLSGCWQWWPMRRARRSERETSRGVSHRVKSRFTTVRMPAQVPSAGPAGGGKPHSPSDGGGEEKRTSSASCVVEGAVAGLETVKDGE---GATGKH-APQKDDGDSQPAAAVAVKV 398
            MATTLSGCWQWWPMRRARRSERETSRGVS +VKSRFTT+RMPAQV SAGPAG G+PHSPSDGGG E+ TSS SC   GAVAGLET   GE   GA G+H + QK+DGDSQ AAAVAVKV
Sbjct:    1 MATTLSGCWQWWPMRRARRSERETSRGVSRKVKSRFTTIRMPAQVSSAGPAGRGRPHSPSDGGGGEE-TSSVSCAALGAVAGLETDIIGESSGGAIGRHPSQQKEDGDSQSAAAVAVKV 118
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10495.396.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G9G3_ECTSI4.100e-4776.72Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KGG6_9PHAE2.610e-4278.15RING-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10495contigE-fasciculatus_F_contig10495:3970..4757 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size611
Cds size414
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10495.396.1prot_E-fasciculatus_F_contig10495.396.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig10495 4114..4704 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927546.4596303-UTR-E-fasciculatus_F_contig10495:3969..41131622927546.4596303-UTR-E-fasciculatus_F_contig10495:3969..4113Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10495 3970..4113 -
1695995588.9673593-UTR-E-fasciculatus_F_contig10495:3969..41131695995588.9673593-UTR-E-fasciculatus_F_contig10495:3969..4113Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10495 3970..4113 -
1622927546.498014-UTR-E-fasciculatus_F_contig10495:4704..47571622927546.498014-UTR-E-fasciculatus_F_contig10495:4704..4757Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10495 4705..4757 -
1695995588.9964316-UTR-E-fasciculatus_F_contig10495:4704..47571695995588.9964316-UTR-E-fasciculatus_F_contig10495:4704..4757Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10495 4705..4757 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927546.4723349-CDS-E-fasciculatus_F_contig10495:4113..44501622927546.4723349-CDS-E-fasciculatus_F_contig10495:4113..4450Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10495 4114..4450 -
1695995588.9763324-CDS-E-fasciculatus_F_contig10495:4113..44501695995588.9763324-CDS-E-fasciculatus_F_contig10495:4113..4450Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10495 4114..4450 -
1622927546.484016-CDS-E-fasciculatus_F_contig10495:4627..47041622927546.484016-CDS-E-fasciculatus_F_contig10495:4627..4704Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10495 4628..4704 -
1695995588.985661-CDS-E-fasciculatus_F_contig10495:4627..47041695995588.985661-CDS-E-fasciculatus_F_contig10495:4627..4704Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10495 4628..4704 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig10495.396.1

>prot_E-fasciculatus_F_contig10495.396.1 ID=prot_E-fasciculatus_F_contig10495.396.1|Name=mRNA_E-fasciculatus_F_contig10495.396.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=138bp
MATTLSGCWQWWPMRRARRSERETSRGVSHRVKSRFTTVRMPAQVPSAGP
AGGGKPHSPSDGGGEEKRTSSASCVVEGAVAGLETVKDGEGATGKHAPQK
DDGDSQPAAAVAVKVCVRDRVTGHGRGVAVGSRRRAT*
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mRNA from alignment at E-fasciculatus_F_contig10495:3970..4757-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig10495.396.1 ID=mRNA_E-fasciculatus_F_contig10495.396.1|Name=mRNA_E-fasciculatus_F_contig10495.396.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=788bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10495:3970..4757- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CACACAACAAGACAAGCGTACAATACCTGTTTTACCTTTGTCTGGTGTCG
GGTATGGCTACCACCCTCAGCGGGTGCTGGCAATGGTGGCCGATGCGCCG
GGCCAGGCGCTCCGAGCGGGAGACCTCGAGGTGACTGGGAGTGTCGTCTC
TTTACAGCGACCTTCTGAGTTGAACTCTGCGGCCACACGCGCAACTACAA
GTAATCATTTTGGGCGAAGCGAGCGCACCAACACACGGGGGCTGTAACTT
GAACGTCTTCCGTTCGCTGTCGTTCGCCTTTGTCTCCCTCTCATGTTCGC
GTTTCAGAGGTGTGAGTCACAGGGTGAAGAGCCGATTCACCACGGTAAGG
ATGCCAGCGCAGGTGCCCTCTGCTGGGCCCGCGGGAGGAGGAAAGCCCCA
CTCGCCCAGCGACGGCGGCGGAGAGGAAAAGAGAACAAGTTCTGCCTCTT
GCGTCGTGGAGGGAGCAGTTGCCGGATTGGAGACTGTCAAAGACGGCGAA
GGAGCGACAGGGAAGCATGCACCGCAGAAGGACGACGGGGATTCACAGCC
AGCGGCAGCCGTGGCCGTGAAGGTTTGCGTGCGGGATAGGGTTACTGGGC
ATGGTAGGGGTGTTGCTGTGGGGAGCAGACGGCGTGCTACATAGACAATG
ACCGTTCAAACAAATATGGTGGGGGGAGGTATAGCTGGCTTGGTCTGAAC
CCTACGAGCCCTCTCATCTCTCATCGCCGTAAACCGTGAAAGGGCGCCGA
CATACTCACACACACACTGCTGTTGAACCTCGCACCCG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10495:3970..4757-

>mRNA_E-fasciculatus_F_contig10495.396.1 ID=mRNA_E-fasciculatus_F_contig10495.396.1|Name=mRNA_E-fasciculatus_F_contig10495.396.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=828bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10495:3970..4757- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCTACCACCCTCAGCGGGTGCTGGCAATGGTGGCCGATGCGCCGGGC
CAGGCGCTCCGAGCGGGAGACCTCGAGATGGCTACCACCCTCAGCGGGTG
CTGGCAATGGTGGCCGATGCGCCGGGCCAGGCGCTCCGAGCGGGAGACCT
CGAGAGGTGTGAGTCACAGGGTGAAGAGCCGATTCACCACGGTAAGGATG
CCAGCGCAGGTGCCCTCTGCTGGGCCCGCGGGAGGAGGAAAGCCCCACTC
GCCCAGCGACGGCGGCGGAGAGGAAAAGAGAACAAGTTCTGCCTCTTGCG
TCGTGGAGGGAGCAGTTGCCGGATTGGAGACTGTCAAAGACGGCGAAGGA
GCGACAGGGAAGCATGCACCGCAGAAGGACGACGGGGATTCACAGCCAGC
GGCAGCCGTGGCCGTGAAGGTTTGCGTGCGGGATAGGGTTACTGGGCATG
GTAGGGGTGTTGCTGTGGGGAGCAGACGGCGTGCTACATAGAGGTGTGAG
TCACAGGGTGAAGAGCCGATTCACCACGGTAAGGATGCCAGCGCAGGTGC
CCTCTGCTGGGCCCGCGGGAGGAGGAAAGCCCCACTCGCCCAGCGACGGC
GGCGGAGAGGAAAAGAGAACAAGTTCTGCCTCTTGCGTCGTGGAGGGAGC
AGTTGCCGGATTGGAGACTGTCAAAGACGGCGAAGGAGCGACAGGGAAGC
ATGCACCGCAGAAGGACGACGGGGATTCACAGCCAGCGGCAGCCGTGGCC
GTGAAGGTTTGCGTGCGGGATAGGGTTACTGGGCATGGTAGGGGTGTTGC
TGTGGGGAGCAGACGGCGTGCTACATAG
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