mRNA_E-fasciculatus_F_contig10490.392.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig10490.392.1
Unique NamemRNA_E-fasciculatus_F_contig10490.392.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig10490.392.1 vs. uniprot
Match: D8LN70_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN70_ECTSI)

HSP 1 Score: 125 bits (315), Expect = 2.490e-31
Identity = 84/108 (77.78%), Postives = 87/108 (80.56%), Query Frame = 1 
Query:    1 AAATGGXXXXNVTAMSTDHLHGSGSNGAVGGGAPLANGLLRWSFPPPGMSGHPGGVPGEGDGAGGGPLPSGLGRFSXXXXXXXXXXXXXXXXXXXXXXXXXXERGEGQ 324
            +AAT  XXXXNVTAMSTDHLHGSGSNGAVGGGAPLA+GLLRWSFPPPGM GHPGGV GEGDGAGGGP+PSGLGR  XXXXXXXXXXX               ERGEGQ
Sbjct:  655 SAATXXXXXXNVTAMSTDHLHGSGSNGAVGGGAPLASGLLRWSFPPPGMPGHPGGVTGEGDGAGGGPMPSGLGRLXXXXXXXXXXXXAGDVGGGGGDERSGGERGEGQ 762
[Close]
BLAST of mRNA_E-fasciculatus_F_contig10490.392.1 vs. uniprot
Match: A0A6H5KNA0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNA0_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 1.390e-29
Identity = 65/103 (63.11%), Postives = 70/103 (67.96%), Query Frame = 1 
Query:   16 GXXXXNVTAMSTDHLHGSGSNGAVGGGAPLANGLLRWSFPPPGMSGHPGGVPGEGDGAGGGPLPSGLGRFSXXXXXXXXXXXXXXXXXXXXXXXXXXERGEGQ 324
            G    NVTAMSTDHLHGSGSNGA+GGGAPLA+GLLRWSFPPPG+S HPGGV GEGDGAGGGP+PSGLGR +                          ERGEGQ
Sbjct:  706 GGGGGNVTAMSTDHLHGSGSNGALGGGAPLASGLLRWSFPPPGVSEHPGGVTGEGDGAGGGPVPSGLGRLNGFGALSGVSVSAGDVGGGGGDERSGGERGEGQ 808
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10490.392.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LN70_ECTSI2.490e-3177.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KNA0_9PHAE1.390e-2963.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10490contigE-fasciculatus_F_contig10490:1853..2176 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size324
Cds size324
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927546.1899703-CDS-E-fasciculatus_F_contig10490:1852..21761622927546.1899703-CDS-E-fasciculatus_F_contig10490:1852..2176Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10490 1853..2176 +
1695995588.8093765-CDS-E-fasciculatus_F_contig10490:1852..21761695995588.8093765-CDS-E-fasciculatus_F_contig10490:1852..2176Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10490 1853..2176 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10490.392.1prot_E-fasciculatus_F_contig10490.392.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig10490 1853..2176 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig10490.392.1

>prot_E-fasciculatus_F_contig10490.392.1 ID=prot_E-fasciculatus_F_contig10490.392.1|Name=mRNA_E-fasciculatus_F_contig10490.392.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=108bp
AAATGGGGGGNVTAMSTDHLHGSGSNGAVGGGAPLANGLLRWSFPPPGMS
GHPGGVPGEGDGAGGGPLPSGLGRFSGLGALSGVGASGGDVGGGGGDERG
GGERGEGQ
back to top

mRNA from alignment at E-fasciculatus_F_contig10490:1853..2176+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig10490.392.1 ID=mRNA_E-fasciculatus_F_contig10490.392.1|Name=mRNA_E-fasciculatus_F_contig10490.392.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=324bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10490:1853..2176+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCCGCCGCCACGGGCGGAGGAGGGGGGGGTAACGTGACCGCGATGAGCAC
CGACCACCTGCACGGCAGCGGCAGCAACGGCGCCGTGGGCGGAGGAGCTC
CCCTGGCGAACGGCCTGCTCCGGTGGTCCTTCCCCCCGCCCGGAATGTCG
GGACACCCGGGAGGGGTGCCCGGGGAAGGGGACGGAGCGGGGGGGGGTCC
CTTACCTTCGGGCTTGGGTCGTTTTAGTGGGTTGGGGGCGCTGAGCGGGG
TAGGTGCATCCGGGGGCGATGTTGGCGGTGGCGGTGGCGACGAGAGAGGT
GGCGGTGAGCGCGGGGAAGGGCAG
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10490:1853..2176+

>mRNA_E-fasciculatus_F_contig10490.392.1 ID=mRNA_E-fasciculatus_F_contig10490.392.1|Name=mRNA_E-fasciculatus_F_contig10490.392.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=648bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10490:1853..2176+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCCGCCGCCACGGGCGGAGGAGGGGGGGGTAACGTGACCGCGATGAGCAC
CGACCACCTGCACGGCAGCGGCAGCAACGGCGCCGTGGGCGGAGGAGCTC
CCCTGGCGAACGGCCTGCTCCGGTGGTCCTTCCCCCCGCCCGGAATGTCG
GGACACCCGGGAGGGGTGCCCGGGGAAGGGGACGGAGCGGGGGGGGGTCC
CTTACCTTCGGGCTTGGGTCGTTTTAGTGGGTTGGGGGCGCTGAGCGGGG
TAGGTGCATCCGGGGGCGATGTTGGCGGTGGCGGTGGCGACGAGAGAGGT
GGCGGTGAGCGCGGGGAAGGGCAGGCCGCCGCCACGGGCGGAGGAGGGGG
GGGTAACGTGACCGCGATGAGCACCGACCACCTGCACGGCAGCGGCAGCA
ACGGCGCCGTGGGCGGAGGAGCTCCCCTGGCGAACGGCCTGCTCCGGTGG
TCCTTCCCCCCGCCCGGAATGTCGGGACACCCGGGAGGGGTGCCCGGGGA
AGGGGACGGAGCGGGGGGGGGTCCCTTACCTTCGGGCTTGGGTCGTTTTA
GTGGGTTGGGGGCGCTGAGCGGGGTAGGTGCATCCGGGGGCGATGTTGGC
GGTGGCGGTGGCGACGAGAGAGGTGGCGGTGAGCGCGGGGAAGGGCAG
back to top