mRNA_E-fasciculatus_F_contig1049.390.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1049.390.1 vs. uniprot
Match: A0A6H5KDV7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDV7_9PHAE) HSP 1 Score: 260 bits (665), Expect = 8.820e-86 Identity = 120/161 (74.53%), Postives = 137/161 (85.09%), Query Frame = 3
Query: 3 DNRLQMVPIRDPRAVAVSTYFYHVYNNSPRNYREQHHSLDEAVLEILPQLCHLTTLRHILFEGLLSDRSELFWYEEAIEEPFDWHHRWASFAGLILPGSWIDGMVVANQEGRIFNPHPGGKKQSAKRTWRDEVSPGIRQEMDSILRKWLPGVLLARFGIPP 485
DNRLQ VPIRDPRAVAVSTYF+ V+ ++ NY++ H SLD+ VLEILP LCH TTLRHILF GLLS+R+ELFWYE+ +E+PFDWH+RWASFAGLILPG WIDGMV NQ + NPHPGG + S RTW+DEVSPGIR EMDSILRKWLPGVLLAR+GIPP
Sbjct: 65 DNRLQFVPIRDPRAVAVSTYFHRVHKDN--NYQKLHPSLDQTVLEILPVLCHFTTLRHILFGGLLSNRTELFWYEQTVEDPFDWHYRWASFAGLILPGGWIDGMVAENQAHKHLNPHPGGAETSDNRTWQDEVSPGIRPEMDSILRKWLPGVLLARYGIPP 223
BLAST of mRNA_E-fasciculatus_F_contig1049.390.1 vs. uniprot
Match: A0A6H5JG38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG38_9PHAE) HSP 1 Score: 202 bits (514), Expect = 2.750e-63 Identity = 99/166 (59.64%), Postives = 121/166 (72.89%), Query Frame = 3
Query: 3 DNRLQMVPIRDPRAVAVSTYFYHVYNNSPRNYRE---QHHSLDEAVLEILPQLCHLTTLRHILFEGLLSDRSELFWYEEAIEEPFDWHHRWASFAGLILPGSWI---DGMVVANQEGRIFNPHPGGKKQSAKRTWRDEVSPGIRQEMDSILRKWLPGVLLARFGIP 482
D+ LQ +RDPRAVAVSTYFY + P Y + + SLDEAVL ILPQLC TT+RH+LF+G LSD+SE+FWYE+A+ +P WH+RWASFAG LP SWI D + Q+ +PHPGG++ S+KRTW DE+SP IR+EMDSILR WLPGVLL R GIP
Sbjct: 27 DDSLQFAVLRDPRAVAVSTYFY--VKSHPAFYSDHVSRGKSLDEAVLLILPQLCQFTTIRHLLFDGQLSDKSEIFWYEDAMRDPLGWHYRWASFAGFALPASWIKDIDATLPEAQQKVKRDPHPGGQQVSSKRTWEDEISPAIREEMDSILRTWLPGVLLERLGIP 190
BLAST of mRNA_E-fasciculatus_F_contig1049.390.1 vs. uniprot
Match: D7G2T4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2T4_ECTSI) HSP 1 Score: 184 bits (467), Expect = 1.440e-56 Identity = 89/156 (57.05%), Postives = 110/156 (70.51%), Query Frame = 3
Query: 27 IRDPRAVAVSTYFYHVYNNSPRNYREQHHSLDEAVLEILPQLCHLTTLRHILFEGLLSDRSELFWYEEAIEEPFDWHHRWASFAGLILPGSWID----GMVVANQEGRIFNPHPGGKKQSAKRTWRDEVSPGIRQEMDSILRKWLPGVLLARFGIP 482
+RDPRAVAVSTYFY + ++ + SLDEAV+ ILPQ+C TT+RHILF+G LSDRSE+FWYE+A+ +P W++RWAS AG LP WI + A + R PHPGG+ S+ RTW DEVSP R EM+SILR WLPGVLLARF +P
Sbjct: 1 MRDPRAVAVSTYFYIKRSPIHLHHPSRGKSLDEAVVVILPQICQFTTIRHILFDGQLSDRSEIFWYEDAMRDPLGWYNRWASLAGFTLPARWIKDIQASLTEAAENDRKREPHPGGQVVSSDRTWEDEVSPETRLEMNSILRTWLPGVLLARFDVP 156
BLAST of mRNA_E-fasciculatus_F_contig1049.390.1 vs. uniprot
Match: D7FUF6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUF6_ECTSI) HSP 1 Score: 177 bits (448), Expect = 1.700e-54 Identity = 77/102 (75.49%), Postives = 88/102 (86.27%), Query Frame = 3
Query: 180 LFEGLLSDRSELFWYEEAIEEPFDWHHRWASFAGLILPGSWIDGMVVANQEGRIFNPHPGGKKQSAKRTWRDEVSPGIRQEMDSILRKWLPGVLLARFGIPP 485
+FEGLLSDRSE+FWYEE +E+PF WH+RWASFAGLILP +WIDGMV NQE FN HPGG K++AKRTWRDEVSPGI +M+SILRKWLP VLLARF +PP
Sbjct: 1 MFEGLLSDRSEMFWYEETLEDPFAWHYRWASFAGLILPRAWIDGMVAVNQERLFFNRHPGGGKRTAKRTWRDEVSPGIHHDMESILRKWLPPVLLARFEVPP 102
BLAST of mRNA_E-fasciculatus_F_contig1049.390.1 vs. uniprot
Match: D8LJE4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJE4_ECTSI) HSP 1 Score: 128 bits (322), Expect = 4.690e-32 Identity = 65/171 (38.01%), Postives = 100/171 (58.48%), Query Frame = 3
Query: 3 DNRLQMVPIRDPRAVAVSTYFYHVYNNSPRNYREQHHSLDEAVLEILPQLCHLTTLRHILFEGLLSDRSELFWYEEAIEEPFDWHHRWASFAGLILPGSWIDGMVVANQE--------GRIFNPHPGGKKQSAKRTWRDEVSPGIRQEMDSILRKWLPGVLLARFGI--PP 485
D+R+QM+ +RDPRAVAVS++F+ ++ P S+D VL +LP +CH LR+++ L ++ F Y+E++ +P WH RW S GL P + + N G+ + HPGGK+ + KRTW DE+S + ++++ I R+WLP VLL +FGI PP
Sbjct: 258 DDRIQMLILRDPRAVAVSSFFHLKTHHHPFWKHLTDESVDSFVLRMLPTICHFIHLRYLVLHEKLGGKTVEFTYDESLADPLQWHQRWLSSVGLTPPPGVV--LQATNTSLRREYGFAGKGVDKHPGGKEATEKRTWEDEISHDVAEQLEGICREWLPPVLLEKFGIGAPP 426
BLAST of mRNA_E-fasciculatus_F_contig1049.390.1 vs. uniprot
Match: A0A6H5JP89_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP89_9PHAE) HSP 1 Score: 105 bits (261), Expect = 1.890e-25 Identity = 53/152 (34.87%), Postives = 85/152 (55.92%), Query Frame = 3
Query: 63 FYHVYNNSPRNYREQH-HSLDEAVLEILPQLCHLTTLRHILFEGLLSDRSELFWYEEAIEEPFDWHHRWASFAGLILPGSWIDGMVVANQE--------GRIFNPHPGGKKQSAKRTWRDEVSPGIRQEMDSILRKWLPGVLLARFGI--PP 485
F+H+ + ++ H S+D VL +LP +CH LR+++ L ++ F Y+E++ +P WH RW S GL P + + + N G+ + HPGGK+ + KRTW DE+S + ++++ I R+WLP VLL +FGI PP
Sbjct: 10 FFHLKTHHTPLWKYWHDESVDSFVLRMLPTICHFIHLRYLVLHEKLGGKTVEFTYDESLADPLQWHQRWLSSVGLTPPPAVV--LQATNTSLRREYGFVGKGVDKHPGGKEATEKRTWEDEISREVAEQLEDICREWLPPVLLEKFGIGAPP 159
BLAST of mRNA_E-fasciculatus_F_contig1049.390.1 vs. uniprot
Match: A0A6H5KK10_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK10_9PHAE) HSP 1 Score: 94.4 bits (233), Expect = 1.880e-22 Identity = 42/58 (72.41%), Postives = 47/58 (81.03%), Query Frame = 3
Query: 312 MVVANQEGRIFNPHPGGKKQSAKRTWRDEVSPGIRQEMDSILRKWLPGVLLARFGIPP 485
MV NQ + NPHPGG + KRTW++EVSPGIR EMDSILRKWLPGVLLAR+GIPP
Sbjct: 1 MVAENQAHKHLNPHPGGAETPFKRTWQNEVSPGIRPEMDSILRKWLPGVLLARYGIPP 58 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1049.390.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1049.390.1 >prot_E-fasciculatus_F_contig1049.390.1 ID=prot_E-fasciculatus_F_contig1049.390.1|Name=mRNA_E-fasciculatus_F_contig1049.390.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=157bp MVPIRDPRAVAVSTYFYHVYNNSPRNYREQHHSLDEAVLEILPQLCHLTTback to top mRNA from alignment at E-fasciculatus_F_contig1049:18493..19038+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1049.390.1 ID=mRNA_E-fasciculatus_F_contig1049.390.1|Name=mRNA_E-fasciculatus_F_contig1049.390.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=546bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1049:18493..19038+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1049:18493..19038+ >mRNA_E-fasciculatus_F_contig1049.390.1 ID=mRNA_E-fasciculatus_F_contig1049.390.1|Name=mRNA_E-fasciculatus_F_contig1049.390.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=942bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1049:18493..19038+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |