mRNA_E-fasciculatus_F_contig10486.387.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig10486.387.1
Unique NamemRNA_E-fasciculatus_F_contig10486.387.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig10486.387.1 vs. uniprot
Match: A0A6H5K0M2_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0M2_9PHAE)

HSP 1 Score: 162 bits (409), Expect = 3.800e-44
Identity = 78/92 (84.78%), Postives = 83/92 (90.22%), Query Frame = 3 
Query:    3 WQTGNPPAEVGQGFGN--ASWNNGSGATWSAADRMMGGGLDGISGSPPIVASLPIPTLQERESSSGRQQQHQELGSIPPPTQPQFPGTGGPW 272
            WQ GN PA+VGQ FGN  ASWNNGS ATWSAA+RMMGGG+DG+SGSPPI ASL IPTLQERESSSGRQQQHQ+ GSIPPPTQPQFPGTGGPW
Sbjct:  731 WQAGNTPADVGQAFGNNNASWNNGSSATWSAAERMMGGGVDGVSGSPPIAASLSIPTLQERESSSGRQQQHQKFGSIPPPTQPQFPGTGGPW 822
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BLAST of mRNA_E-fasciculatus_F_contig10486.387.1 vs. uniprot
Match: D8LNU6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNU6_ECTSI)

HSP 1 Score: 115 bits (287), Expect = 9.470e-32
Identity = 53/58 (91.38%), Postives = 55/58 (94.83%), Query Frame = 3 
Query:   99 MMGGGLDGISGSPPIVASLPIPTLQERESSSGRQQQHQELGSIPPPTQPQFPGTGGPW 272
            MMGGG+DG+SGSPPI ASLPIPTLQERESSSGRQQQHQE GSIPPPTQPQFPGTG PW
Sbjct:    1 MMGGGVDGVSGSPPIAASLPIPTLQERESSSGRQQQHQEFGSIPPPTQPQFPGTGSPW 58
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10486.387.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K0M2_9PHAE3.800e-4484.78Protein kinase domain-containing protein n=1 Tax=E... [more]
D8LNU6_ECTSI9.470e-3291.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10486contigE-fasciculatus_F_contig10486:4531..4855 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size325
Cds size177
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10486.387.1prot_E-fasciculatus_F_contig10486.387.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig10486 4629..4805 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927545.8570068-UTR-E-fasciculatus_F_contig10486:4530..46281622927545.8570068-UTR-E-fasciculatus_F_contig10486:4530..4628Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10486 4531..4628 +
1695995588.5668025-UTR-E-fasciculatus_F_contig10486:4530..46281695995588.5668025-UTR-E-fasciculatus_F_contig10486:4530..4628Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10486 4531..4628 +
1622927545.8855422-UTR-E-fasciculatus_F_contig10486:4805..48551622927545.8855422-UTR-E-fasciculatus_F_contig10486:4805..4855Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10486 4806..4855 +
1695995588.5849411-UTR-E-fasciculatus_F_contig10486:4805..48551695995588.5849411-UTR-E-fasciculatus_F_contig10486:4805..4855Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10486 4806..4855 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927545.8727214-CDS-E-fasciculatus_F_contig10486:4628..48051622927545.8727214-CDS-E-fasciculatus_F_contig10486:4628..4805Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10486 4629..4805 +
1695995588.576001-CDS-E-fasciculatus_F_contig10486:4628..48051695995588.576001-CDS-E-fasciculatus_F_contig10486:4628..4805Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10486 4629..4805 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig10486.387.1

>prot_E-fasciculatus_F_contig10486.387.1 ID=prot_E-fasciculatus_F_contig10486.387.1|Name=mRNA_E-fasciculatus_F_contig10486.387.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=59bp
MMGGGLDGISGSPPIVASLPIPTLQERESSSGRQQQHQELGSIPPPTQPQ
FPGTGGPW*
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mRNA from alignment at E-fasciculatus_F_contig10486:4531..4855+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig10486.387.1 ID=mRNA_E-fasciculatus_F_contig10486.387.1|Name=mRNA_E-fasciculatus_F_contig10486.387.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=325bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10486:4531..4855+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGTGGCAGACCGGGAATCCTCCGGCAGAAGTCGGCCAGGGCTTCGGTAAC
GCTAGCTGGAACAACGGCAGCGGCGCTACGTGGTCTGCCGCGGATAGGAT
GATGGGCGGCGGGCTGGACGGGATATCGGGGTCCCCGCCGATTGTGGCCT
CGCTACCCATCCCCACCTTGCAAGAACGAGAATCGAGCTCGGGGAGACAA
CAGCAGCACCAGGAACTTGGAAGCATCCCACCACCAACACAGCCCCAGTT
CCCAGGGACAGGGGGTCCGTGGTGACATGGAACAGCAGTTGCGTTTTACG
TAGGCATTCCTTCACGCTGTTAGAA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10486:4531..4855+

>mRNA_E-fasciculatus_F_contig10486.387.1 ID=mRNA_E-fasciculatus_F_contig10486.387.1|Name=mRNA_E-fasciculatus_F_contig10486.387.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=354bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10486:4531..4855+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGATGGGCGGCGGGCTGGACGGGATATCGGGGTCCCCGCCGATTGTGGC
CTCGCTACCCATCCCCACCTTGCAAGAACGAGAATCGAGCTCGGGGAGAC
AACAGCAGCACCAGGAACTTGGAAGCATCCCACCACCAACACAGCCCCAG
TTCCCAGGGACAGGGGGTCCGTGGTGAATGATGGGCGGCGGGCTGGACGG
GATATCGGGGTCCCCGCCGATTGTGGCCTCGCTACCCATCCCCACCTTGC
AAGAACGAGAATCGAGCTCGGGGAGACAACAGCAGCACCAGGAACTTGGA
AGCATCCCACCACCAACACAGCCCCAGTTCCCAGGGACAGGGGGTCCGTG
GTGA
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