mRNA_E-fasciculatus_F_contig10479.381.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig10479.381.1
Unique NamemRNA_E-fasciculatus_F_contig10479.381.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig10479.381.1 vs. uniprot
Match: A0A6H5KQH9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQH9_9PHAE)

HSP 1 Score: 559 bits (1440), Expect = 5.840e-179
Identity = 279/294 (94.90%), Postives = 284/294 (96.60%), Query Frame = 1 
Query:   70 AAVA-TGGAARISAEGSSNLEKRGSVDSSSGRGGDKDDDAPPPHLPGRRVLWVFAVASPDGRAFLQLFLDLDLLVFCVRGSSIRGELRFSTPEHLSCGGARVWHHVLLAHSRAKSRLLGTKDKLHLWVDGELADTVKVESTSFTTPEGPPCAYLGCPHPQAFLDASVGATVAPVWHLGPCALVTEVVDVAPLMFALGPEYTGVWTAESPLEAISSANAAGTLRRLQALGGAAGFGAIGGDVPHALQRRSLRELDRCFNVTERAYYWNRSDRAGVTDSFYLLLAPELVTFAYNTR 948
            AAVA TGGAAR +AEGSSNLEKRGSVDS+SGRGGDKDDD PPPHLPGRRVLWVF VASPDGRAFLQLFLDLDLLVFC RGSSI+GELRF TPEHLSCGGARVWHHVLLAHSRAKSRLL TKDKLHLWVDGEL DTVKVESTSFTTPEGPPCAYLGCPHPQAFLDASVGATVAPVWHLGPCALVTE VDVAPLMFALGPEYTGVWTAESPLEAISSANAAGTLRRLQALGGAAGFGA+GGDVPHALQRR LRELDRCFNVTERAYYW+RSDRAGVTDSFYLLLAPELVTFAYNTR
Sbjct: 1873 AAVAVTGGAARTAAEGSSNLEKRGSVDSASGRGGDKDDDGPPPHLPGRRVLWVFVVASPDGRAFLQLFLDLDLLVFCARGSSIQGELRFRTPEHLSCGGARVWHHVLLAHSRAKSRLLATKDKLHLWVDGELVDTVKVESTSFTTPEGPPCAYLGCPHPQAFLDASVGATVAPVWHLGPCALVTEFVDVAPLMFALGPEYTGVWTAESPLEAISSANAAGTLRRLQALGGAAGFGALGGDVPHALQRRGLRELDRCFNVTERAYYWHRSDRAGVTDSFYLLLAPELVTFAYNTR 2166
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BLAST of mRNA_E-fasciculatus_F_contig10479.381.1 vs. uniprot
Match: D8LI42_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI42_ECTSI)

HSP 1 Score: 424 bits (1089), Expect = 7.940e-132
Identity = 213/245 (86.94%), Postives = 216/245 (88.16%), Query Frame = 1 
Query:  214 VLWVFAVASPDGRAFLQLFLDLDLLVFCVRGSSIRGELRFSTPEHLSCGGARVWHHVLLAHSRAKSRLLGTKDKLHLWVDGELADTVKVESTSFTTPEGPPCAYLGCPHPQAFLDASVGATVAPVWHLGPCALVTEVVDVAPLMFALGPEYTGVWTAESPLEAISSANAAGTLRRLQALGGAAGFGAIGGDVPHALQRRSLRELDRCFNVTERAYYWNRSDRAGVTDSFYLLLAPELVTFAYNTR 948
            VLWVF VASPDGRAFLQLFLDLDLLVFC RGSSIRGE+RF+TPEHLSCGGARVWHHVLLAHSRAKSRLLGTKDKLHLWVDGELADTVK                       AFLDASVGATVAPVWHLGPCALVTE VDVAPLMFALGPEYTGVWTAESPLEAISSANAAG LRRLQALGGAAGFGA+GGDVPHAL RR LRELDRCFNVTERAYYWNRSDRAGVTDSFYLLLAPELVTFAYNTR
Sbjct: 1817 VLWVFVVASPDGRAFLQLFLDLDLLVFCARGSSIRGEIRFNTPEHLSCGGARVWHHVLLAHSRAKSRLLGTKDKLHLWVDGELADTVK-----------------------AFLDASVGATVAPVWHLGPCALVTEFVDVAPLMFALGPEYTGVWTAESPLEAISSANAAGALRRLQALGGAAGFGALGGDVPHALHRRVLRELDRCFNVTERAYYWNRSDRAGVTDSFYLLLAPELVTFAYNTR 2038
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10479.381.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KQH9_9PHAE5.840e-17994.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LI42_ECTSI7.940e-13286.94Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10479contigE-fasciculatus_F_contig10479:319..2371 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score425.2
Seed ortholog evalue2.6e-116
Seed eggNOG ortholog2880.D8LI42
EggNOG OGs2E8XM@1,2SFC4@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons4
Model size951
Cds size951
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10479.381.1prot_E-fasciculatus_F_contig10479.381.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig10479 319..2371 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927545.453637-CDS-E-fasciculatus_F_contig10479:318..5251622927545.453637-CDS-E-fasciculatus_F_contig10479:318..525Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10479 319..525 -
1695995588.2760189-CDS-E-fasciculatus_F_contig10479:318..5251695995588.2760189-CDS-E-fasciculatus_F_contig10479:318..525Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10479 319..525 -
1622927545.469061-CDS-E-fasciculatus_F_contig10479:852..11191622927545.469061-CDS-E-fasciculatus_F_contig10479:852..1119Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10479 853..1119 -
1695995588.2867818-CDS-E-fasciculatus_F_contig10479:852..11191695995588.2867818-CDS-E-fasciculatus_F_contig10479:852..1119Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10479 853..1119 -
1622927545.483701-CDS-E-fasciculatus_F_contig10479:1563..18271622927545.483701-CDS-E-fasciculatus_F_contig10479:1563..1827Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10479 1564..1827 -
1695995588.296626-CDS-E-fasciculatus_F_contig10479:1563..18271695995588.296626-CDS-E-fasciculatus_F_contig10479:1563..1827Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10479 1564..1827 -
1622927545.4947808-CDS-E-fasciculatus_F_contig10479:2158..23711622927545.4947808-CDS-E-fasciculatus_F_contig10479:2158..2371Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10479 2159..2371 -
1695995588.306852-CDS-E-fasciculatus_F_contig10479:2158..23711695995588.306852-CDS-E-fasciculatus_F_contig10479:2158..2371Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10479 2159..2371 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig10479.381.1

>prot_E-fasciculatus_F_contig10479.381.1 ID=prot_E-fasciculatus_F_contig10479.381.1|Name=mRNA_E-fasciculatus_F_contig10479.381.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=317bp
RTAAEASKTAAGKGSPGGGRAAGAAVATGGAARISAEGSSNLEKRGSVDS
SSGRGGDKDDDAPPPHLPGRRVLWVFAVASPDGRAFLQLFLDLDLLVFCV
RGSSIRGELRFSTPEHLSCGGARVWHHVLLAHSRAKSRLLGTKDKLHLWV
DGELADTVKVESTSFTTPEGPPCAYLGCPHPQAFLDASVGATVAPVWHLG
PCALVTEVVDVAPLMFALGPEYTGVWTAESPLEAISSANAAGTLRRLQAL
GGAAGFGAIGGDVPHALQRRSLRELDRCFNVTERAYYWNRSDRAGVTDSF
YLLLAPELVTFAYNTR*
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mRNA from alignment at E-fasciculatus_F_contig10479:319..2371-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig10479.381.1 ID=mRNA_E-fasciculatus_F_contig10479.381.1|Name=mRNA_E-fasciculatus_F_contig10479.381.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2053bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10479:319..2371- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGCACGGCAGCGGAGGCGTCGAAGACGGCCGCGGGCAAGGGATCGCCGGG
CGGCGGCCGGGCGGCCGGAGCGGCGGTGGCGACCGGTGGCGCTGCCAGGA
TTTCCGCAGAGGGCTCGTCGAACCTTGAGAAGAGGGGAAGCGTCGACAGC
TCTTCCGGGCGCGGAGGGGATAAAGACGACGATGCGCCTCCCCCTCATTT
GCCCGGGCGACGGGTAGGTCTCTTGTGGTGTTTTGTGTGTGGGCCCGTGT
GTGTGCACGTTACTGCTTGCAGTTGGACGTACGTTATTCGTGCCTGAGAC
GTTGCCCGGCGGGAGGAGGAAACTGGGTAGCAACAAACACGCGATATCTT
TTTGTTAAAATGACAAACACGTGCTGGCGTACGGGTGCATATTTGGCACG
TTCATACCCCTCCAGATTTTGTGCTAACCCGTGTGCGCGAGGGTGGTGGC
GGGGATTGCTTGTTCTCCATGGGATTTGCACAAGTAGAGTACACCCACGG
AACCCCCCCTCCGCCATGTGCGCCGAAAAAATTCTCCCTCCAAGGTGCTG
TGGGTGTTCGCGGTCGCCTCTCCCGACGGGCGAGCCTTCCTGCAGCTGTT
CCTCGACCTCGACCTCCTCGTGTTCTGCGTGAGGGGTTCCTCCATCAGGG
GGGAGCTCCGCTTCAGCACCCCCGAACACCTGTCGTGCGGCGGGGCTCGC
GTGTGGCACCACGTCCTCCTGGCCCACTCGAGGGCGAAGAGCCGCCTCTT
GGGCACGAAGGACAAGCTGCACCTGTGGGTGGACGGCGAGCTGGCCGATA
CCGTCAAGGTTGGTGGTTGGTGAAGAAGCAAGCCGTTGGTCTTGTCCGTT
TCGTTGTCTCCTTGGGGTTTGGTATAGATGACAGCTTTTCGTTGTTGCTT
GGGGAACGGAAAAGGCAAGCGCGAGGGAGTGGTTGGGGTTTTGATGCAGG
GGTTGGTCAGCATGTATGTCCGGTCTGTGGTGCCCTGCGTTGGTGTTACC
TTTCCCTTCCGACGGTTAGGCGGGGTGCCGAATCAACGCATCACAGCATG
GCATGTCTGGTTTGGCACAGCTAACGCAACCATTAAGACCAGCTTCTGGT
CCATCCTTGTTAAACGCAGCCTGGGCCAGCGGTACCCAGCATAATCGATT
CGTCCGGCAGTGTTGTAGGGATTCGAGGTCTATGGCCCACCGATTACGGC
ATGCGTTTACATGAGCACCCTCCTCCCCCCCCCCGCGCCTCGCGACCGAC
AGGTGGAAAGCACGAGCTTCACCACTCCGGAGGGGCCCCCCTGCGCGTAC
CTTGGTTGCCCCCACCCCCAGGCGTTCCTGGATGCCTCCGTGGGAGCGAC
GGTGGCGCCGGTGTGGCACCTCGGTCCTTGCGCCCTGGTGACGGAAGTCG
TAGACGTGGCTCCGCTGATGTTCGCCCTGGGGCCCGAGTACACCGGGGTC
TGGACGGCGGAGAGCCCGCTGGAGGCGATCTCGAGCGCGAACGCGGCGGG
GACCCTGCGGCGGCTGCAGGTGTGTGTGTGTGTGTGTGTGTGTGTGATTT
TGGTGTGGATTGGATCGGTCCATTCTTGTGATCCTGCGGAACCCGTCGTC
ACCATGCTCCCCCCTACAGAAATACTCGGGTGACTTGACGATCATCTTTC
TCTGCGGAAGCAGAGACAAAATATGCTGTTGCTGGGACTGCACATCAAGG
CGGAAACTTGGAGAGAGCGCGTGAGATTCGGCGGCATGTTGTAGTAGTCG
GAACGATGTCTCGCCTTACAAAAGGATGCGTGATTGCAACGTGAGAGACT
AGGAACATCGGTGCCCCCCCCCCCTACCCCCCCCACCCACCTCCAGGCAC
TTGGCGGCGCGGCTGGATTCGGTGCCATCGGGGGCGACGTCCCGCATGCT
CTCCAGCGCCGCAGCCTCCGGGAGCTAGACCGTTGCTTCAACGTGACGGA
ACGGGCCTACTACTGGAACCGGTCGGACCGGGCGGGGGTGACTGACTCGT
TTTACTTGCTCTTGGCGCCCGAGCTGGTCACTTTCGCTTACAACACAAGG
TGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10479:319..2371-

>mRNA_E-fasciculatus_F_contig10479.381.1 ID=mRNA_E-fasciculatus_F_contig10479.381.1|Name=mRNA_E-fasciculatus_F_contig10479.381.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1902bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10479:319..2371- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGCACGGCAGCGGAGGCGTCGAAGACGGCCGCGGGCAAGGGATCGCCGGG
CGGCGGCCGGGCGGCCGGAGCGGCGGTGGCGACCGGTGGCGCTGCCAGGA
TTTCCGCAGAGGGCTCGTCGAACCTTGAGAAGAGGGGAAGCGTCGACAGC
TCTTCCGGGCGCGGAGGGGATAAAGACGACGATGCGCCTCCCCCTCATTT
GCCCGGGCGACGGCGCACGGCAGCGGAGGCGTCGAAGACGGCCGCGGGCA
AGGGATCGCCGGGCGGCGGCCGGGCGGCCGGAGCGGCGGTGGCGACCGGT
GGCGCTGCCAGGATTTCCGCAGAGGGCTCGTCGAACCTTGAGAAGAGGGG
AAGCGTCGACAGCTCTTCCGGGCGCGGAGGGGATAAAGACGACGATGCGC
CTCCCCCTCATTTGCCCGGGCGACGGGTGCTGTGGGTGTTCGCGGTCGCC
TCTCCCGACGGGCGAGCCTTCCTGCAGCTGTTCCTCGACCTCGACCTCCT
CGTGTTCTGCGTGAGGGGTTCCTCCATCAGGGGGGAGCTCCGCTTCAGCA
CCCCCGAACACCTGTCGTGCGGCGGGGCTCGCGTGTGGCACCACGTCCTC
CTGGCCCACTCGAGGGCGAAGAGCCGCCTCTTGGGCACGAAGGACAAGCT
GCACCTGTGGGTGGACGGCGAGCTGGCCGATACCGTCAAGGTGCTGTGGG
TGTTCGCGGTCGCCTCTCCCGACGGGCGAGCCTTCCTGCAGCTGTTCCTC
GACCTCGACCTCCTCGTGTTCTGCGTGAGGGGTTCCTCCATCAGGGGGGA
GCTCCGCTTCAGCACCCCCGAACACCTGTCGTGCGGCGGGGCTCGCGTGT
GGCACCACGTCCTCCTGGCCCACTCGAGGGCGAAGAGCCGCCTCTTGGGC
ACGAAGGACAAGCTGCACCTGTGGGTGGACGGCGAGCTGGCCGATACCGT
CAAGGTGGAAAGCACGAGCTTCACCACTCCGGAGGGGCCCCCCTGCGCGT
ACCTTGGTTGCCCCCACCCCCAGGCGTTCCTGGATGCCTCCGTGGGAGCG
ACGGTGGCGCCGGTGTGGCACCTCGGTCCTTGCGCCCTGGTGACGGAAGT
CGTAGACGTGGCTCCGCTGATGTTCGCCCTGGGGCCCGAGTACACCGGGG
TCTGGACGGCGGAGAGCCCGCTGGAGGCGATCTCGAGCGCGAACGCGGCG
GGGACCCTGCGGCGGCTGCAGGTGGAAAGCACGAGCTTCACCACTCCGGA
GGGGCCCCCCTGCGCGTACCTTGGTTGCCCCCACCCCCAGGCGTTCCTGG
ATGCCTCCGTGGGAGCGACGGTGGCGCCGGTGTGGCACCTCGGTCCTTGC
GCCCTGGTGACGGAAGTCGTAGACGTGGCTCCGCTGATGTTCGCCCTGGG
GCCCGAGTACACCGGGGTCTGGACGGCGGAGAGCCCGCTGGAGGCGATCT
CGAGCGCGAACGCGGCGGGGACCCTGCGGCGGCTGCAGGCACTTGGCGGC
GCGGCTGGATTCGGTGCCATCGGGGGCGACGTCCCGCATGCTCTCCAGCG
CCGCAGCCTCCGGGAGCTAGACCGTTGCTTCAACGTGACGGAACGGGCCT
ACTACTGGAACCGGTCGGACCGGGCGGGGGTGACTGACTCGTTTTACTTG
CTCTTGGCGCCCGAGCTGGTCACTTTCGCTTACAACACAAGGTGAGCACT
TGGCGGCGCGGCTGGATTCGGTGCCATCGGGGGCGACGTCCCGCATGCTC
TCCAGCGCCGCAGCCTCCGGGAGCTAGACCGTTGCTTCAACGTGACGGAA
CGGGCCTACTACTGGAACCGGTCGGACCGGGCGGGGGTGACTGACTCGTT
TTACTTGCTCTTGGCGCCCGAGCTGGTCACTTTCGCTTACAACACAAGGT
GA
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