mRNA_E-fasciculatus_F_contig10475.379.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig10475.379.1
Unique NamemRNA_E-fasciculatus_F_contig10475.379.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10475.379.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10475contigE-fasciculatus_F_contig10475:1938..2400 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size463
Cds size300
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10475.379.1prot_E-fasciculatus_F_contig10475.379.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig10475 2042..2341 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927545.2556422-UTR-E-fasciculatus_F_contig10475:1937..20411622927545.2556422-UTR-E-fasciculatus_F_contig10475:1937..2041Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10475 1938..2041 +
1695995588.2208817-UTR-E-fasciculatus_F_contig10475:1937..20411695995588.2208817-UTR-E-fasciculatus_F_contig10475:1937..2041Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10475 1938..2041 +
1622927545.2794847-UTR-E-fasciculatus_F_contig10475:2341..24001622927545.2794847-UTR-E-fasciculatus_F_contig10475:2341..2400Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10475 2342..2400 +
1695995588.2373307-UTR-E-fasciculatus_F_contig10475:2341..24001695995588.2373307-UTR-E-fasciculatus_F_contig10475:2341..2400Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10475 2342..2400 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927545.2667782-CDS-E-fasciculatus_F_contig10475:2041..23411622927545.2667782-CDS-E-fasciculatus_F_contig10475:2041..2341Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10475 2042..2341 +
1695995588.2290938-CDS-E-fasciculatus_F_contig10475:2041..23411695995588.2290938-CDS-E-fasciculatus_F_contig10475:2041..2341Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10475 2042..2341 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig10475.379.1

>prot_E-fasciculatus_F_contig10475.379.1 ID=prot_E-fasciculatus_F_contig10475.379.1|Name=mRNA_E-fasciculatus_F_contig10475.379.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=100bp
MQSCRSSPNTPSPSDRDGQMVGTNLLHPSVSPCTRFNPYTMRNRVQNNTF
ATTCLLPFSSTSKLGPNSLADPKHRATTTVIWAKRERLGVHLFVFRPHS*
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mRNA from alignment at E-fasciculatus_F_contig10475:1938..2400+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig10475.379.1 ID=mRNA_E-fasciculatus_F_contig10475.379.1|Name=mRNA_E-fasciculatus_F_contig10475.379.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=463bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10475:1938..2400+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCTTTTTCAGTGCGCTGCTTGTGGAGCCTGGCCGTCTCCAGGAGGATAGG
AAACAACTTCGCTCTTGCTCTCCTCCATGGGCGACACGGCCTTGCTCCAT
TCCGATGCAAAGCTGTCGAAGTTCACCGAATACTCCCTCTCCGTCGGACC
GAGATGGGCAAATGGTCGGGACAAACCTACTGCACCCCTCTGTGTCACCG
TGCACTAGGTTCAATCCATACACAATGCGGAATCGGGTTCAAAACAACAC
GTTCGCTACAACTTGTTTGTTGCCGTTCTCATCCACTTCAAAGCTTGGCC
CTAACTCCTTAGCAGATCCCAAACACAGGGCAACAACGACGGTTATTTGG
GCAAAGCGTGAGCGATTGGGGGTGCATTTGTTTGTGTTTCGTCCACATTC
CTAGTCCATCCAACATCTTATTCAAGAACAACCCCACCCTCACCCACTTG
CGAACCCACCCAC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10475:1938..2400+

>mRNA_E-fasciculatus_F_contig10475.379.1 ID=mRNA_E-fasciculatus_F_contig10475.379.1|Name=mRNA_E-fasciculatus_F_contig10475.379.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=600bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10475:1938..2400+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCAAAGCTGTCGAAGTTCACCGAATACTCCCTCTCCGTCGGACCGAGA
TGGGCAAATGGTCGGGACAAACCTACTGCACCCCTCTGTGTCACCGTGCA
CTAGGTTCAATCCATACACAATGCGGAATCGGGTTCAAAACAACACGTTC
GCTACAACTTGTTTGTTGCCGTTCTCATCCACTTCAAAGCTTGGCCCTAA
CTCCTTAGCAGATCCCAAACACAGGGCAACAACGACGGTTATTTGGGCAA
AGCGTGAGCGATTGGGGGTGCATTTGTTTGTGTTTCGTCCACATTCCTAG
ATGCAAAGCTGTCGAAGTTCACCGAATACTCCCTCTCCGTCGGACCGAGA
TGGGCAAATGGTCGGGACAAACCTACTGCACCCCTCTGTGTCACCGTGCA
CTAGGTTCAATCCATACACAATGCGGAATCGGGTTCAAAACAACACGTTC
GCTACAACTTGTTTGTTGCCGTTCTCATCCACTTCAAAGCTTGGCCCTAA
CTCCTTAGCAGATCCCAAACACAGGGCAACAACGACGGTTATTTGGGCAA
AGCGTGAGCGATTGGGGGTGCATTTGTTTGTGTTTCGTCCACATTCCTAG
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