mRNA_E-fasciculatus_F_contig10466.370.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig10466.370.1
Unique NamemRNA_E-fasciculatus_F_contig10466.370.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10466.370.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10466contigE-fasciculatus_F_contig10466:1405..3943 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size479
Cds size351
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10466.370.1prot_E-fasciculatus_F_contig10466.370.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig10466 1405..3815 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927544.161605-CDS-E-fasciculatus_F_contig10466:1404..15651622927544.161605-CDS-E-fasciculatus_F_contig10466:1404..1565Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10466 1405..1565 -
1695995587.672014-CDS-E-fasciculatus_F_contig10466:1404..15651695995587.672014-CDS-E-fasciculatus_F_contig10466:1404..1565Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10466 1405..1565 -
1622927544.1740668-CDS-E-fasciculatus_F_contig10466:3625..38151622927544.1740668-CDS-E-fasciculatus_F_contig10466:3625..3815Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10466 3626..3815 -
1695995587.6836264-CDS-E-fasciculatus_F_contig10466:3625..38151695995587.6836264-CDS-E-fasciculatus_F_contig10466:3625..3815Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10466 3626..3815 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927544.1894615-UTR-E-fasciculatus_F_contig10466:3815..39431622927544.1894615-UTR-E-fasciculatus_F_contig10466:3815..3943Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10466 3816..3943 -
1695995587.6916907-UTR-E-fasciculatus_F_contig10466:3815..39431695995587.6916907-UTR-E-fasciculatus_F_contig10466:3815..3943Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10466 3816..3943 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig10466.370.1

>prot_E-fasciculatus_F_contig10466.370.1 ID=prot_E-fasciculatus_F_contig10466.370.1|Name=mRNA_E-fasciculatus_F_contig10466.370.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=117bp
MLSARVDLFARRQAHRQTLQQRKMSKRSARSAKSADTVARERSVMPFATI
EWAESTSACPSVPGCREDHSSAERTPVHPPDSEASQDYEVSPTSCATSSQ
LVQAFVCVSVIPAHER*
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mRNA from alignment at E-fasciculatus_F_contig10466:1405..3943-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig10466.370.1 ID=mRNA_E-fasciculatus_F_contig10466.370.1|Name=mRNA_E-fasciculatus_F_contig10466.370.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2539bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10466:1405..3943- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTGGAATGTGGAGCTCTGTTTTGAAGAAGAAGCCGGGCCTTTGGTATCCA
TAGGCCTAGAGGAAACGATGATGGGGACGGCGGTAAGGGGGTGAGACCGG
GGCCGACCGATGAGGACATCAGCAATGAATGCTCAGCGCGAGAGTTGACT
TGTTTGCTCGGCGGCAGGCTCACCGACAGACGTTACAACAGCGGAAGATG
TCCAAGAGATCAGCGAGATCAGCGAAGAGTGCCGATACAGTAGCCCGCGA
ACGTTCAGTGATGCCATTTGCAACGATTGAATGGGCGGAATCCACCAGTG
CATGTCCCAGTGTCCCAGGTGTGTCGTGAATTGAATGCGATCAAATGTGC
CCCACCGTGCGACCACCACGTTACATCTGGTCTCATCGCTGCAAATGTTG
CGCATAGAACTGCGACGGGTTGTTGCCCGTCGGCGTTGTTTGGGCATTTT
CAAGTTTCAAGACCATTGACTTTCGGTGCCCTTCGTGCACGCGGGCGTGT
CCATGATTCTATTTTGCCTGCATGAACTTCGTGTGGATCGCCTCCGAGTC
TCGAGTTTTGGCGAACGCCCCTGTCTCCACCGCACTGCCGAGAATACCTG
GCACAATACCCACTCTCTGTTACTTTTTGGTGACACACAGACAGATCTTG
TTCTTGGTTGGATGCTCTTCTGAACGACCTGATTATCAAATGAAACACCG
CGGGCGCAGCAGGCAGCAGTTTATTCAATACTTCAAATATCAGCACCGGG
ATGTGGCTCAGATCCCATGCCATATCCTGCCTCGCGTCACGACGCAGAGT
TATTTCCACGCACTCCAAGACAAGGCATTTGAATGGTCACTTCACGTACA
AAAACAGACAAGAGAGGGCTGCTGTGTGTCCAATCTGTGGAGCTACTACT
GTAACTAGGTTATCTCTCTCTGCGGAGCCTCATTCATCAAGGATGTACAG
CCGCAATGACGAGCAGCAGGTGGACAACGATAGTTTTCCTTAGAACAACT
CTCTCCCCACGATGATATCGGGGCGAGAGAGTGGGGAAGGACGGGGTCTG
TTATCTACCGTCGTGCCCAGATCATTTTCTGGGAGAAAGCTATTTTAAAG
GACGTTTGGACGTCAATGGACGGTTTCTGAACACAGCGGTGTCCGCCGTG
CGAACAAGATACAAACATTTTGCAGAACACTGCCATGTTCTACTTTCTAC
ACGGAAGGGCTAGAGCCAAACCAAATCCACAACACATCACCTGCGAACCA
CAGCACTAATAGCTAAAGGACACGGCACGATCGTGGCGGCACGAAAGTCA
ACGGTGGTTAACTCCAAAAACACAAACGGAGATGGTGTGGATGATGTGGA
TGAAACGACGAGCACCCCTGAACACCCTGGAAAAGACAAGACGCTCAAAA
GCGAGCAATGTACGGCTTCGATCGCTGGACGATGCGGTCAAAGAATAAGA
GAGAATAGAATGATGAGTGGAATCACCCCGTGATACCGCTGCCTGTATAT
AGTGCTTATAGTAGTCAAGGAATTCAAAATGAAGGCGGGCACTGGCTATT
CGTGCGCACCGCAAAAAACGACAGCACCATCTCAGCACCACCACCAAAGG
AGTTCAGACGGCGAAACAAGGATAGATGACATTGTGCGCGAAATGAGCAC
ATATGTATTCGACGCGCGTCCCAGGGGAACCCAATCCGGCTCACCAGGGT
TGACAAGTTGCCCACCGGAACTATACACAATTGAAAATAGTTACCTTCTC
AATGGCAATGCCGACGGCAAACAAAGACACCGGGAACGAAGGTAAGCTAC
AATGTAGCGCGGGAAGTATCAAACTTTATCTTGACACAAGACTACCTGAC
ATTGCCCAGTGCACAGCCCAGAGCTCGTCGCACCAGAGGCCAGCAGCCAG
CCAGCCTCACATCAGGTCCACACAGATTCACGGCAAACTGGCGATGAGCT
CACTCACTCACGCAGACCATCGTGAGCCTGACCATGCTCTCTCTCCCCCT
TAGATATGTACTCTGTTGTGTAACGCTTCGGATGCCGTCGAAGAAGACCG
CATGTGCAACTACAGTATTCGCTTGTTCCCAGGGAAGAACAGCTCGCCGG
GAAGCCGGGCTAAATCGCCCCCCTCGCCCCCCGTGATCGGTATCGATAAA
AATCACAATGCAAGAAATGACACAACATGAAACTGACACAATCTGTTCTT
TATCACTTAATCAAGAGCTCGAGACTTGGATACATTACACGTTTTTGTTT
CTCGAGGGGCTGTTTTTGGTCTGTCAACGTTGTGGGTGGCGTGATTGCGT
CCCTGGGGGTGCATAATTTATTTTGGGAACGCATGCATATCCTCGATACT
CACCCTCCTCTCCACATGGCGGTTGCAGGGTGCAGGGAAGACCACAGTAG
TGCGGAAAGGACGCCGGTGCACCCTCCGGATTCAGAGGCATCGCAAGATT
ACGAGGTATCACCAACTTCTTGTGCAACATCCAGTCAACTTGTCCAGGCG
TTTGTTTGTGTTTCTGTCATTCCCGCACATGAGAGATGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10466:1405..3943-

>mRNA_E-fasciculatus_F_contig10466.370.1 ID=mRNA_E-fasciculatus_F_contig10466.370.1|Name=mRNA_E-fasciculatus_F_contig10466.370.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=702bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10466:1405..3943- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCTCAGCGCGAGAGTTGACTTGTTTGCTCGGCGGCAGGCTCACCGACA
GACGTTACAACAGCGGAAGATGTCCAAGAGATCAGCGAGATCAGCGAAGA
GTGCCGATACAGTAGCCCGCGAACGTTCAGTGATGCCATTTGCAACGATT
GAATGGGCGGAATCCACCAGTGCATGTCCCAGTGTCCCAGATGCTCAGCG
CGAGAGTTGACTTGTTTGCTCGGCGGCAGGCTCACCGACAGACGTTACAA
CAGCGGAAGATGTCCAAGAGATCAGCGAGATCAGCGAAGAGTGCCGATAC
AGTAGCCCGCGAACGTTCAGTGATGCCATTTGCAACGATTGAATGGGCGG
AATCCACCAGTGCATGTCCCAGTGTCCCAGGGTGCAGGGAAGACCACAGT
AGTGCGGAAAGGACGCCGGTGCACCCTCCGGATTCAGAGGCATCGCAAGA
TTACGAGGTATCACCAACTTCTTGTGCAACATCCAGTCAACTTGTCCAGG
CGTTTGTTTGTGTTTCTGTCATTCCCGCACATGAGAGATGAGGTGCAGGG
AAGACCACAGTAGTGCGGAAAGGACGCCGGTGCACCCTCCGGATTCAGAG
GCATCGCAAGATTACGAGGTATCACCAACTTCTTGTGCAACATCCAGTCA
ACTTGTCCAGGCGTTTGTTTGTGTTTCTGTCATTCCCGCACATGAGAGAT
GA
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