mRNA_E-fasciculatus_F_contig10449.354.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig10449.354.1
Unique NamemRNA_E-fasciculatus_F_contig10449.354.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig10449.354.1 vs. uniprot
Match: A0A6H5L342_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L342_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 7.550e-30
Identity = 76/132 (57.58%), Postives = 85/132 (64.39%), Query Frame = 1 
Query:    1 VDTAVHGGGQRQGSKTAADPVGRRRVLMARMGEGLGLDLSPAIDALLQREEDLRE-----------------------------TTGGSTLPRGTEHDANS-HQDKGGLERQLQQC-PQHDTSGGGAENDRT 303
            VDT VHGGGQRQGS TAA+PVGRRRVL+AR+GEGLGLDLSPAIDALL REE LR                              TTG STLPRGTE DA+  H ++G ++RQ +Q  PQHDT GG AEN  T
Sbjct:  404 VDTGVHGGGQRQGSTTAANPVGRRRVLIARLGEGLGLDLSPAIDALLHREEHLRVPESHFGSSGDIPEALDENTPASRMPVSTGTTGESTLPRGTEDDADRRHDEQGKIQRQQKQHHPQHDTGGGSAENGTT 535
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10449.354.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L342_9PHAE7.550e-3057.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10449contigE-fasciculatus_F_contig10449:3554..4521 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size305
Cds size303
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927542.460913-CDS-E-fasciculatus_F_contig10449:3555..36961622927542.460913-CDS-E-fasciculatus_F_contig10449:3555..3696Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10449 3556..3696 -
1695995586.992114-CDS-E-fasciculatus_F_contig10449:3555..36961695995586.992114-CDS-E-fasciculatus_F_contig10449:3555..3696Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10449 3556..3696 -
1622927542.4766076-CDS-E-fasciculatus_F_contig10449:4359..45211622927542.4766076-CDS-E-fasciculatus_F_contig10449:4359..4521Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10449 4360..4521 -
1695995587.0020487-CDS-E-fasciculatus_F_contig10449:4359..45211695995587.0020487-CDS-E-fasciculatus_F_contig10449:4359..4521Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10449 4360..4521 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10449.354.1prot_E-fasciculatus_F_contig10449.354.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig10449 3556..4521 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig10449.354.1

>prot_E-fasciculatus_F_contig10449.354.1 ID=prot_E-fasciculatus_F_contig10449.354.1|Name=mRNA_E-fasciculatus_F_contig10449.354.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=101bp
VDTAVHGGGQRQGSKTAADPVGRRRVLMARMGEGLGLDLSPAIDALLQRE
EDLRETTGGSTLPRGTEHDANSHQDKGGLERQLQQCPQHDTSGGGAENDR
T
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mRNA from alignment at E-fasciculatus_F_contig10449:3554..4521-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig10449.354.1 ID=mRNA_E-fasciculatus_F_contig10449.354.1|Name=mRNA_E-fasciculatus_F_contig10449.354.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=968bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10449:3554..4521- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTCGATACGGCGGTGCACGGTGGTGGGCAACGCCAGGGCAGCAAAACAGC
GGCGGATCCAGTCGGACGACGGCGAGTGCTGATGGCGAGGATGGGAGAGG
GACTCGGACTCGATCTATCCCCGGCTATTGACGCCCTGCTCCAGAGAGAG
GAAGACCTCCGAGTAAGCACGTATGAAGACCTAATTCAGGGTTGAGGAGA
ACAAAGAACCACATAACTGATGAGGCAACAGATTGCCAAGTCACATTTTG
GCTCGTCACAAGACATCTGAGAAGCCTTTGACAAAAACACGTCAGTTTCA
GCGATGCCTGCTACGGCATACGAACTGATCAACATCTAACCATTCTTATT
CTTCGTGCATGTCGTGTGTCCCGAAGAAAGGCGTAGTTGTAGGGGGGAAC
ATCCACGGGTCACACACAGCTACATAGACCAGCACAAATAGCGCGATAAA
GCAGTCAGCAGCCGCATATGTCAGCAAGTGAAGTCAACCAGACCGGTTCT
AACAACCAACCTTGTCGTCACCAATGACAGCCAGCACCAGACACGTGCGG
AGCGGTTTCCTTTGTAAAAAACTCTGTTGCATGCTTCGGTTCAAAACAAT
ATTGTGCGTCGCGACGAAGCGACCAGAATCCTTGGCACGTGCTTCTGTCT
GTTAAACGTGCTTCACAGCCCCAGCAGTCCCAGTCCCGATGACCCAAACG
TGTTCTCACGGACATCACTACAGTAACAGCAAAAGTGCTGGTCACCTCCG
TGCCGCCTTTCTCAGCCTTAGCATGGTTTTCGTGTGTTCCTCTCCGTAAT
ACCTTGCCCTCGAACATGGTACCAGGAAACCACTGGCGGATCTACGCTCC
CTCGAGGAACGGAGCACGATGCTAACAGCCATCAAGACAAAGGGGGACTA
GAGAGGCAGCTACAACAGTGTCCGCAACATGACACAAGCGGGGGCGGTGC
CGAAAATGACAGAACCGG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10449:3554..4521-

>mRNA_E-fasciculatus_F_contig10449.354.1 ID=mRNA_E-fasciculatus_F_contig10449.354.1|Name=mRNA_E-fasciculatus_F_contig10449.354.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=606bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10449:3554..4521- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTCGATACGGCGGTGCACGGTGGTGGGCAACGCCAGGGCAGCAAAACAGC
GGCGGATCCAGTCGGACGACGGCGAGTGCTGATGGCGAGGATGGGAGAGG
GACTCGGACTCGATCTATCCCCGGCTATTGACGCCCTGCTCCAGAGAGAG
GAAGACCTCCGAGTCGATACGGCGGTGCACGGTGGTGGGCAACGCCAGGG
CAGCAAAACAGCGGCGGATCCAGTCGGACGACGGCGAGTGCTGATGGCGA
GGATGGGAGAGGGACTCGGACTCGATCTATCCCCGGCTATTGACGCCCTG
CTCCAGAGAGAGGAAGACCTCCGAGAAACCACTGGCGGATCTACGCTCCC
TCGAGGAACGGAGCACGATGCTAACAGCCATCAAGACAAAGGGGGACTAG
AGAGGCAGCTACAACAGTGTCCGCAACATGACACAAGCGGGGGCGGTGCC
GAAAATGACAGAACCGAAACCACTGGCGGATCTACGCTCCCTCGAGGAAC
GGAGCACGATGCTAACAGCCATCAAGACAAAGGGGGACTAGAGAGGCAGC
TACAACAGTGTCCGCAACATGACACAAGCGGGGGCGGTGCCGAAAATGAC
AGAACC
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