mRNA_E-fasciculatus_F_contig10449.353.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig10449.353.1
Unique NamemRNA_E-fasciculatus_F_contig10449.353.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig10449.353.1 vs. uniprot
Match: D7G4T6_ECTSI (Plastid protein-export protein secB, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4T6_ECTSI)

HSP 1 Score: 245 bits (625), Expect = 7.530e-79
Identity = 124/132 (93.94%), Postives = 128/132 (96.97%), Query Frame = 1 
Query:    1 QATTDDG-EQVREQPTQEASLAAARQEAARSKQLNIACNDVVRTILDGNPTNEKERAEALRQRLIAQKEDLVSPEDDMSALFFDNLLLVCEHELHPDIGILRGQHAKAWNTILHYIEDAGWQLTDPPFSISG 393
            QATTDD  EQ REQPTQEASLAAARQEAARSKQLNIACNDVVRTILDGNPTNEKERAEALRQRLI+QK+DLVSPEDDMSALFFDNLLLVCEHELHPDIGILRGQ+ KAWNTILHY+EDAGWQLTDPPFSISG
Sbjct:   68 QATTDDNSEQAREQPTQEASLAAARQEAARSKQLNIACNDVVRTILDGNPTNEKERAEALRQRLISQKDDLVSPEDDMSALFFDNLLLVCEHELHPDIGILRGQYGKAWNTILHYVEDAGWQLTDPPFSISG 199
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BLAST of mRNA_E-fasciculatus_F_contig10449.353.1 vs. uniprot
Match: A0A836CL25_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CL25_9STRA)

HSP 1 Score: 117 bits (293), Expect = 2.390e-29
Identity = 52/101 (51.49%), Postives = 73/101 (72.28%), Query Frame = 1 
Query:   91 KQLNIACNDVVRTILDGNPTNEKERAEALRQRLIAQKEDLVSPEDDMSALFFDNLLLVCEHELHPDIGILRGQHAKAWNTILHYIEDAGWQLTDPPFSISG 393
            K LNIACNDV++TIL  +        + +++RLI  KE LV  +D  S LF++NL+ VCEH LHP +  L+G++A AW ++LH+IEDAGWQLT+PPF ++G
Sbjct:   56 KHLNIACNDVIKTILKADAEKLDSDMQGIKERLIRDKELLVVTDDPQSELFYNNLVCVCEHSLHPRLHELKGRYASAWKSMLHWIEDAGWQLTEPPFRVNG 156
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10449.353.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G4T6_ECTSI7.530e-7993.94Plastid protein-export protein secB, putative n=2 ... [more]
A0A836CL25_9STRA2.390e-2951.49Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10449contigE-fasciculatus_F_contig10449:804..1566 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPlastid protein-export protein secB, putative
Ec32 orthologEc-20_000420.1
Exons1
Model size765
Cds size396
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927542.5140922-CDS-E-fasciculatus_F_contig10449:803..11991622927542.5140922-CDS-E-fasciculatus_F_contig10449:803..1199Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10449 804..1199 +
1695995587.0117013-CDS-E-fasciculatus_F_contig10449:803..11991695995587.0117013-CDS-E-fasciculatus_F_contig10449:803..1199Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10449 804..1199 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927542.5299113-UTR-E-fasciculatus_F_contig10449:1199..15661622927542.5299113-UTR-E-fasciculatus_F_contig10449:1199..1566Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10449 1200..1566 +
1695995587.0211003-UTR-E-fasciculatus_F_contig10449:1199..15661695995587.0211003-UTR-E-fasciculatus_F_contig10449:1199..1566Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10449 1200..1566 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10449.353.1prot_E-fasciculatus_F_contig10449.353.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig10449 804..1199 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig10449.353.1

>prot_E-fasciculatus_F_contig10449.353.1 ID=prot_E-fasciculatus_F_contig10449.353.1|Name=mRNA_E-fasciculatus_F_contig10449.353.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=132bp
QATTDDGEQVREQPTQEASLAAARQEAARSKQLNIACNDVVRTILDGNPT
NEKERAEALRQRLIAQKEDLVSPEDDMSALFFDNLLLVCEHELHPDIGIL
RGQHAKAWNTILHYIEDAGWQLTDPPFSISG*
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mRNA from alignment at E-fasciculatus_F_contig10449:804..1566+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig10449.353.1 ID=mRNA_E-fasciculatus_F_contig10449.353.1|Name=mRNA_E-fasciculatus_F_contig10449.353.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=763bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10449:804..1566+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGGCGACGACCGATGACGGCGAGCAGGTCCGCGAACAACCAACGCAGGA
GGCAAGCTTGGCAGCAGCACGACAAGAGGCGGCGAGGAGCAAGCAGTTGA
ACATCGCGTGCAACGACGTCGTCCGCACCATCCTGGACGGTAACCCAACC
AACGAGAAGGAGAGGGCGGAGGCTCTGCGGCAAAGATTGATCGCCCAGAA
GGAAGACCTCGTCTCCCCGGAGGACGACATGTCGGCGCTCTTCTTCGACA
ACCTGCTCTTGGTTTGCGAGCACGAGCTGCACCCTGACATCGGCATCCTG
CGGGGGCAGCACGCCAAGGCTTGGAACACCATCCTGCACTACATCGAAGA
CGCAGGGTGGCAGCTCACGGACCCCCCGTTTTCGATCTCGGGGTAGATTG
TGGTTTGGACGGTTGCACAGCGTCAAAGAACGGCAGTTCCTTACGCCATG
TAGAGACGCTAGAGCAGATCGTATGCGCTACGTGCATGCAGCGAGTAACC
GAAAGCCATACCCAGCTGGGGGGTTGTCTGATAGTTATTATTCCATGTCC
ATTTTAAGAGTAGCAGTGTTTCTTGTCTTGGTGTCTAGTCTTGTTCTGGG
CTTGCTTTGCTCCGTCTTTATATGGCCGTGTTGTTTTGTTGGTCCGGTTT
AGTGACGCATAGTTAGAACACCTCCACAACTTGCTCAGAAGCAAAGCATG
TGAGTGTCAGAGGGGACACAGCAGTTTCAAAGAGAGGTTTCGATCAATTC
ACATATTTGTTCC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10449:804..1566+

>mRNA_E-fasciculatus_F_contig10449.353.1 ID=mRNA_E-fasciculatus_F_contig10449.353.1|Name=mRNA_E-fasciculatus_F_contig10449.353.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=792bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10449:804..1566+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGGCGACGACCGATGACGGCGAGCAGGTCCGCGAACAACCAACGCAGGA
GGCAAGCTTGGCAGCAGCACGACAAGAGGCGGCGAGGAGCAAGCAGTTGA
ACATCGCGTGCAACGACGTCGTCCGCACCATCCTGGACGGTAACCCAACC
AACGAGAAGGAGAGGGCGGAGGCTCTGCGGCAAAGATTGATCGCCCAGAA
GGAAGACCTCGTCTCCCCGGAGGACGACATGTCGGCGCTCTTCTTCGACA
ACCTGCTCTTGGTTTGCGAGCACGAGCTGCACCCTGACATCGGCATCCTG
CGGGGGCAGCACGCCAAGGCTTGGAACACCATCCTGCACTACATCGAAGA
CGCAGGGTGGCAGCTCACGGACCCCCCGTTTTCGATCTCGGGGTAGCAGG
CGACGACCGATGACGGCGAGCAGGTCCGCGAACAACCAACGCAGGAGGCA
AGCTTGGCAGCAGCACGACAAGAGGCGGCGAGGAGCAAGCAGTTGAACAT
CGCGTGCAACGACGTCGTCCGCACCATCCTGGACGGTAACCCAACCAACG
AGAAGGAGAGGGCGGAGGCTCTGCGGCAAAGATTGATCGCCCAGAAGGAA
GACCTCGTCTCCCCGGAGGACGACATGTCGGCGCTCTTCTTCGACAACCT
GCTCTTGGTTTGCGAGCACGAGCTGCACCCTGACATCGGCATCCTGCGGG
GGCAGCACGCCAAGGCTTGGAACACCATCCTGCACTACATCGAAGACGCA
GGGTGGCAGCTCACGGACCCCCCGTTTTCGATCTCGGGGTAG
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