mRNA_E-fasciculatus_F_contig10431.344.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig10431.344.1
Unique NamemRNA_E-fasciculatus_F_contig10431.344.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig10431.344.1 vs. uniprot
Match: D7FKL2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKL2_ECTSI)

HSP 1 Score: 171 bits (434), Expect = 5.650e-44
Identity = 178/269 (66.17%), Postives = 183/269 (68.03%), Query Frame = 2 
Query:  182 GHEGGGIGQELQEDTTLTEDSLKFSEPSLDSFAMVREGPPRREPGAHAAAARPPGAAAWELGGADEADETQEPPAPDRRDGAVGGTRKGXXXXXXXXXXXXXXXXXXXXXXXXXXFFRSRASGFISRSRAREEAVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSTQEARKRTARLYNSLPEVREAXXXXXXXXERVRRLLEARALEKSRHRSR 988
            GHEGGGI +E  EDTTLTEDSLKFSEPSLDS AM REGPP REPGAHAAA RP GA+AWE+G A   D+TQE PAPD R GA GGTR         XXXXXXXXXXXXX      FFRSRASGFISRSRAREEAVR  XXXXXXXXXXXXXXXXXXXXX                                  XXXXXXX                  VS QEARKRTARLYNSLPEVREAXXXXXXXXERVRRLL+ARALEKSRHRSR
Sbjct:  733 GHEGGGIRRE--EDTTLTEDSLKFSEPSLDSLAMAREGPPGREPGAHAAA-RPTGASAWEVGSAVVRDQTQERPAPDHRGGAAGGTR----GRSEEXXXXXXXXXXXXXAGELAAFFRSRASGFISRSRAREEAVRQRXXXXXXXXXXXXXXXXXXXXXRRDQPHQTGVGPGARMRGGVDVAGPPSGLLGESGXXXXXXXR-----------------VSIQEARKRTARLYNSLPEVREAXXXXXXXXERVRRLLQARALEKSRHRSR 977
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BLAST of mRNA_E-fasciculatus_F_contig10431.344.1 vs. uniprot
Match: A0A6H5KKD4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKD4_9PHAE)

HSP 1 Score: 159 bits (403), Expect = 9.130e-40
Identity = 184/270 (68.15%), Postives = 187/270 (69.26%), Query Frame = 2 
Query:  182 GHEGGGIGQELQEDTTLTEDSLKFSEPSLDSFAMVREGPPRREPGAHAAAARPPGAAAWELGGADEA-DETQEPPAPDRRDGAVGGTRKGXXXXXXXXXXXXXXXXXXXXXXXXXXFFRSRASGFISRSRAREEAVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSTQEARKRTARLYNSLPEVREAXXXXXXXXERVRRLLEARALEKSRHRSR 988
            GHEGGGI Q   EDT LTEDSLKFSEPSLDS AM REGPP REPGAHAAA RP GAAAWE+G A+   DETQE PAPD R     G   G        XXXXXXXXXXXXXX    FFRSRASGFI+RSRAREEAVR XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                   XXX          VS QEARKRTARLYNSLPEVREAXXXXXXXXERVRRLLEARALEKSRHRSR
Sbjct: 1854 GHEGGGIRQ--GEDTALTEDSLKFSEPSLDSLAMAREGPPGREPGAHAAA-RPAGAAAWEIGSAEVVRDETQERPAPDHR-----GCDAGGPSGRSEGXXXXXXXXXXXXXXELAAFFRSRASGFIARSRAREEAVRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRDQPHQTGVGPGARMRGGVDVAGPPSGLLGESGGXXXRRR-------VSIQEARKRTARLYNSLPEVREAXXXXXXXXERVRRLLEARALEKSRHRSR 2108
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10431.344.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FKL2_ECTSI5.650e-4466.17Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KKD4_9PHAE9.130e-4068.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10431contigE-fasciculatus_F_contig10431:28..3103 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size1008
Cds size726
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10431.344.1prot_E-fasciculatus_F_contig10431.344.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig10431 28..2823 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927541.2811172-CDS-E-fasciculatus_F_contig10431:27..1631622927541.2811172-CDS-E-fasciculatus_F_contig10431:27..163Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10431 28..163 -
1695995586.2940443-CDS-E-fasciculatus_F_contig10431:27..1631695995586.2940443-CDS-E-fasciculatus_F_contig10431:27..163Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10431 28..163 -
1622927541.294398-CDS-E-fasciculatus_F_contig10431:989..12761622927541.294398-CDS-E-fasciculatus_F_contig10431:989..1276Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10431 990..1276 -
1695995586.3065634-CDS-E-fasciculatus_F_contig10431:989..12761695995586.3065634-CDS-E-fasciculatus_F_contig10431:989..1276Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10431 990..1276 -
1622927541.3082993-CDS-E-fasciculatus_F_contig10431:1890..20991622927541.3082993-CDS-E-fasciculatus_F_contig10431:1890..2099Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10431 1891..2099 -
1695995586.316162-CDS-E-fasciculatus_F_contig10431:1890..20991695995586.316162-CDS-E-fasciculatus_F_contig10431:1890..2099Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10431 1891..2099 -
1622927541.3230069-CDS-E-fasciculatus_F_contig10431:2729..28231622927541.3230069-CDS-E-fasciculatus_F_contig10431:2729..2823Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10431 2730..2823 -
1695995586.326172-CDS-E-fasciculatus_F_contig10431:2729..28231695995586.326172-CDS-E-fasciculatus_F_contig10431:2729..2823Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10431 2730..2823 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927541.3635206-UTR-E-fasciculatus_F_contig10431:2823..31031622927541.3635206-UTR-E-fasciculatus_F_contig10431:2823..3103Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10431 2824..3103 -
1695995586.3371208-UTR-E-fasciculatus_F_contig10431:2823..31031695995586.3371208-UTR-E-fasciculatus_F_contig10431:2823..3103Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10431 2824..3103 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig10431.344.1

>prot_E-fasciculatus_F_contig10431.344.1 ID=prot_E-fasciculatus_F_contig10431.344.1|Name=mRNA_E-fasciculatus_F_contig10431.344.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=242bp
MVREGPPRREPGAHAAAARPPGAAAWELGGADEADETQEPPAPDRRDGAV
GGTRKGRSEEQEEEGGGEGGGRLEEEGGELAAFFRSRASGFISRSRAREE
AVRQRRDSRRKSREDAEVIAATAAAAAAAAAAAAEQRRDQPHDQQQQQQQ
TGVGAGGRMRGGVDVAPPPSGLLGESGGGGGGRRRVSTQEARKRTARLYN
SLPEVREAREKKEKSEERVRRLLEARALEKSRHRSRRGGGRG
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mRNA from alignment at E-fasciculatus_F_contig10431:28..3103-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig10431.344.1 ID=mRNA_E-fasciculatus_F_contig10431.344.1|Name=mRNA_E-fasciculatus_F_contig10431.344.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3076bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10431:28..3103- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCCTCAATAACTGTGATGTCTCCTATACCTTTGCCATTTTTGTCTTTGAT
GTCTTACTAAAACTTTGGTATCTGTCTTTGACGTCTGCATCGATATATTT
CAACGCATATTAATACCTGCGCTGTTTTCGTTGACACCTCTACTGCTGTC
TTTTGATCCCGCTATTCGTCCCGAACCAGCAGGGCACGAGGGTGGCGGCA
TCGGGCAAGAGCTACAGGAAGACACCACCCTGACGGAAGACTCTCTCAAG
TTCTCCGAGCCCTCGCTCGACTCCTTCGCGATGGTGAGGGAGGGACCGCC
GCGCAGGGAGCCAGGAGCGCATGCTGCTGCTGCTCGACCACCCGGTGCCG
CCGCGTGGGAGCTAGGAGGTGCAGGTGCGGTATATAGGATACCATACCGC
TCATGTGGTAATGTGTATCGCGGAAGAAAGATCGCGAGCTAGCTTTACCG
TACCGGTCATGTGACCGTGCTTGTGTGCAGGTGCGGCATGTAATACCATA
CCACTCATGTGACCACGGTTATGTATCGCGGAAGAGAGATCACGAGCCAG
GTCGTGTGCTGACCGGACATAGCTCGCTCCTCGGGGGGGGGGGGGTTGTG
CGCGGAGTTGGCGAGGCAACGCGCTCGGGGGATAGCCCCCAAGACTGCCA
TCACATCACATCACACCACACATCACATGGCGTCCCATGACTGTTGGTAG
CCGAAGGCACTGAGAGCTCGGTTCTATGTTGTAGAAAGCGCGATATGCTG
TACCCATCTCGCAAGAACCTCGTTGTTTGTGCCGCGTTCGATGTGTTGTG
CCCGTCTCTCAAACACATCTTTGTTTGTGCCGCCTTCGATGTTCGATGTC
TTGATCCCACCACCGCCCGTTCCTCTCCTATCCTATCCTATCCTATCCTC
TCGATCGACGACCCTCATTTCTCCTTCGTTACATATGCTGCTGTCGACAC
GAACGCATATGTACTGTATATGTACCACCGGCGATTTTCCTCCTCCGAGA
AAAGACGAAGCGGACGAGACCCAAGAGCCACCCGCACCTGACCGCCGCGA
TGGTGCGGTAGGTGGCACGAGGAAGGGTCGGTCGGAAGAACAAGAAGAAG
AAGGGGGCGGTGAAGGCGGGGGGCGGCTAGAGGAGGAGGGAGGAGAACTG
GCCGCGTTTTTCAGGAGCCGCGCTTCGGGCTTCATCTCGAGATCAAGGGC
TAGGGAAGAGGCGGTGAGAGGAACAGGAACCAGCCACCTTTTTTTTTCTT
TTTCGAGAACAAAGTAATCAACACACCAAATTCTACTACTTTGTTGTTGT
CTTCCGAAAAAAAAAAAACTGAGTCGATTTTAAAATCGACACAGTCGTAG
ATTTTCACTTTGTGAGTCTTCTTGCCTGTGGAAGTGCGTCTGTTTTATTT
TATGTTTTGGAGGGGGGGTTGGACGATAAATGGTGAGAGGAGCCTGTTTT
TTTTGTTGTTCTTTCTTTGAAAAACGAAACAAAAATCGTCAATATTTCCT
CGCAAACCTCCCGCTTTACGATGACAAGCAAATGCGTGTTGGTATCGGTC
AACGGTTGGCGAGCCTTCTCTTACTCCATCACACACTTGATGTCCTTCTC
TGTTCTCCCTGTAAAGGTTAAGGTTTCGACCTGCTGCCCCATTATTGTCG
TCCACACACACACCTTTACATGTGCTACGAGGCGCCGATGCCTGTTCTTG
ATCCCCCGCTGCCGGTGCCCCTTTGTTGCTGTCTCACCCGGCGACGTCGT
GTTTGATGTCCATGTCGCCCCCTTCCGTGGTGGTGGGTCTTCACATTTGT
GCCTTGGCAACGCCATCGTCTCCCCAGGTGCGGCAAAGGAGAGATTCCCG
ACGCAAGTCCCGCGAAGACGCCGAAGTTATCGCCGCCACCGCCGCCGCCG
CCGCCGCCGCCGCCGCCGCTGCCGCCGAACAGCGGCGTGACCAGCCACAC
GACCAGCAGCAGCAGCAGCAGCAAACAGGGGTGGGGGCGGGGGGGCGGAT
GAGAGGGGGTGTTGATGTCGCGCCCCCCCCGTCCGGGTTGCTTGGCGAGT
CAGGAGGAGGAGGAGGAGGCCGACGGAGGGTTTCCACACAGGAGGCCAGG
AAGAGGACCGCCAGGTACTGAATACAGCAGCACTAAACAAGTACCGGTAG
CCTTAGAAAGGTCATTGGGGTTAGGGCTGTCGGTCGAAGTTCCAGTACAG
CAGTAGCCTTGGTGAAGTGTTTAAGTTTGGTTTTGGTAGATGTTGGGGTT
GGGGATAGAGATACGAAACCCCCCTCTCTACATTGTTACATTTAACCATA
AAACCGTCGCGAAGGCGTTCCCGAAGGAGATACGGAGGAAGGGAAGGGCG
TCGGTATGGTTGCGTCGTTGTCGTGTTGGTATTTAGTGTCGATTGGCGTG
TTTCTGTGAGGGGACGGGGTACAGAGTCGCTTCTCCCTGGCCCTTGGAAA
CCCCGATTGGAAAACGCCAACAATCTCAACAGCTCCCTTTCGGCCGCCCT
GCCGAGGGTAAGTACCTCTATGTACCAAGTACTTGTCTCACGTCTCGCCG
AATCTACTGTAACCGAACGAACACAGTCACCACGGATGTACCTACCAGTA
AAAAGTTGCCGAGCAGAGGCCGGTAACGCTTTTGACGCAGCAACAACAAC
AACAACAACAGCAACAACAACAACAACAACAACCAACTCTATCGTCGCGG
GGCTTGCCGACCACGATCAATGTACGCGTGCCTCAGGCGAACAAGATGTC
TAACCACCGGCAGCACCGCGGCCAGGCTGGCTTTTGCTCTTGTTGTTGGC
GATCAGCAATCACTCGTTCCAAGCCTTGAGGAACGCAATAAGTGTTAGCC
CTTTCGTGTTATTCTGGTTGTGACAATTTCGCATTTTAACGCTCCCCCTC
CGCGGGCCTCCATCCGACGAATCTGCTTGGGTTGCGGCAGGCTGTACAAC
TCCCTGCCGGAGGTGCGCGAGGCTCGAGAAAAGAAGGAGAAGAGTGAGGA
GCGAGTTAGGCGTTTGCTGGAGGCAAGGGCCCTCGAAAAATCTCGACATC
GCTCTCGAAGGGGCGGAGGAAGAGGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10431:28..3103-

>mRNA_E-fasciculatus_F_contig10431.344.1 ID=mRNA_E-fasciculatus_F_contig10431.344.1|Name=mRNA_E-fasciculatus_F_contig10431.344.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1452bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10431:28..3103- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGTGAGGGAGGGACCGCCGCGCAGGGAGCCAGGAGCGCATGCTGCTGC
TGCTCGACCACCCGGTGCCGCCGCGTGGGAGCTAGGAGGTGCAGATGGTG
AGGGAGGGACCGCCGCGCAGGGAGCCAGGAGCGCATGCTGCTGCTGCTCG
ACCACCCGGTGCCGCCGCGTGGGAGCTAGGAGGTGCAGACGAAGCGGACG
AGACCCAAGAGCCACCCGCACCTGACCGCCGCGATGGTGCGGTAGGTGGC
ACGAGGAAGGGTCGGTCGGAAGAACAAGAAGAAGAAGGGGGCGGTGAAGG
CGGGGGGCGGCTAGAGGAGGAGGGAGGAGAACTGGCCGCGTTTTTCAGGA
GCCGCGCTTCGGGCTTCATCTCGAGATCAAGGGCTAGGGAAGAGGCGACG
AAGCGGACGAGACCCAAGAGCCACCCGCACCTGACCGCCGCGATGGTGCG
GTAGGTGGCACGAGGAAGGGTCGGTCGGAAGAACAAGAAGAAGAAGGGGG
CGGTGAAGGCGGGGGGCGGCTAGAGGAGGAGGGAGGAGAACTGGCCGCGT
TTTTCAGGAGCCGCGCTTCGGGCTTCATCTCGAGATCAAGGGCTAGGGAA
GAGGCGGTGCGGCAAAGGAGAGATTCCCGACGCAAGTCCCGCGAAGACGC
CGAAGTTATCGCCGCCACCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCTG
CCGCCGAACAGCGGCGTGACCAGCCACACGACCAGCAGCAGCAGCAGCAG
CAAACAGGGGTGGGGGCGGGGGGGCGGATGAGAGGGGGTGTTGATGTCGC
GCCCCCCCCGTCCGGGTTGCTTGGCGAGTCAGGAGGAGGAGGAGGAGGCC
GACGGAGGGTTTCCACACAGGAGGCCAGGAAGAGGACCGCCAGGTGCGGC
AAAGGAGAGATTCCCGACGCAAGTCCCGCGAAGACGCCGAAGTTATCGCC
GCCACCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCTGCCGCCGAACAGCG
GCGTGACCAGCCACACGACCAGCAGCAGCAGCAGCAGCAAACAGGGGTGG
GGGCGGGGGGGCGGATGAGAGGGGGTGTTGATGTCGCGCCCCCCCCGTCC
GGGTTGCTTGGCGAGTCAGGAGGAGGAGGAGGAGGCCGACGGAGGGTTTC
CACACAGGAGGCCAGGAAGAGGACCGCCAGGCTGTACAACTCCCTGCCGG
AGGTGCGCGAGGCTCGAGAAAAGAAGGAGAAGAGTGAGGAGCGAGTTAGG
CGTTTGCTGGAGGCAAGGGCCCTCGAAAAATCTCGACATCGCTCTCGAAG
GGGCGGAGGAAGAGGAGCTGTACAACTCCCTGCCGGAGGTGCGCGAGGCT
CGAGAAAAGAAGGAGAAGAGTGAGGAGCGAGTTAGGCGTTTGCTGGAGGC
AAGGGCCCTCGAAAAATCTCGACATCGCTCTCGAAGGGGCGGAGGAAGAG
GA
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