mRNA_E-fasciculatus_F_contig10422.335.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig10422.335.1
Unique NamemRNA_E-fasciculatus_F_contig10422.335.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10422.335.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10422contigE-fasciculatus_F_contig10422:390..953 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size564
Cds size402
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10422.335.1prot_E-fasciculatus_F_contig10422.335.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig10422 462..863 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927540.1053765-UTR-E-fasciculatus_F_contig10422:389..4611622927540.1053765-UTR-E-fasciculatus_F_contig10422:389..461Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10422 390..461 +
1695995585.727332-UTR-E-fasciculatus_F_contig10422:389..4611695995585.727332-UTR-E-fasciculatus_F_contig10422:389..461Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10422 390..461 +
1622927540.1351616-UTR-E-fasciculatus_F_contig10422:863..9531622927540.1351616-UTR-E-fasciculatus_F_contig10422:863..953Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10422 864..953 +
1695995585.7455304-UTR-E-fasciculatus_F_contig10422:863..9531695995585.7455304-UTR-E-fasciculatus_F_contig10422:863..953Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10422 864..953 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927540.121156-CDS-E-fasciculatus_F_contig10422:461..8631622927540.121156-CDS-E-fasciculatus_F_contig10422:461..863Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10422 462..863 +
1695995585.736899-CDS-E-fasciculatus_F_contig10422:461..8631695995585.736899-CDS-E-fasciculatus_F_contig10422:461..863Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10422 462..863 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig10422.335.1

>prot_E-fasciculatus_F_contig10422.335.1 ID=prot_E-fasciculatus_F_contig10422.335.1|Name=mRNA_E-fasciculatus_F_contig10422.335.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=134bp
MFGGGGMGEGRFHGWLPNSRRDRVPQKTVCFGWQGPRTAIQIAGGLHGLL
HFHNVCFTGGGVGGVSGKSAKEQGGSRVLYSGISRGTLGGHGRQLAGFYG
LFTVERYQPDALFLPAGVEDTSLCGGVSWGVVC*
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mRNA from alignment at E-fasciculatus_F_contig10422:390..953+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig10422.335.1 ID=mRNA_E-fasciculatus_F_contig10422.335.1|Name=mRNA_E-fasciculatus_F_contig10422.335.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=564bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10422:390..953+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTTGAAACACTCCTTGCCCAGGCATGCGTATCGTGTCGCGGGCGGGCTTT
GAAGTGCCTACGGTCGAATGGCATGTTCGGGGGAGGGGGAATGGGAGAGG
GGCGGTTTCATGGTTGGCTACCAAACTCCAGGAGAGACAGAGTGCCCCAG
AAGACGGTGTGTTTTGGATGGCAGGGGCCGAGGACTGCTATCCAGATTGC
CGGAGGGCTGCACGGCTTACTCCACTTCCATAACGTCTGTTTCACGGGAG
GAGGCGTGGGAGGAGTCTCGGGAAAGAGCGCGAAGGAGCAGGGGGGGTCA
AGGGTGTTATACTCAGGCATTTCGAGAGGGACGCTGGGTGGTCATGGTAG
ACAACTAGCTGGGTTCTATGGCCTGTTCACAGTAGAGAGATATCAACCGG
ATGCACTTTTTCTCCCTGCGGGTGTTGAAGACACTTCCTTGTGCGGCGGA
GTATCTTGGGGGGTCGTCTGCTAGGCTGCAGTGGTGTGAGGAGAGGTCAA
CTCACGATCGGCTGGCGGGGCTAAGGAGATGACCCCCCCTACCCCGTGAC
AACCCAACGCCCCC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10422:390..953+

>mRNA_E-fasciculatus_F_contig10422.335.1 ID=mRNA_E-fasciculatus_F_contig10422.335.1|Name=mRNA_E-fasciculatus_F_contig10422.335.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=804bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10422:390..953+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTTCGGGGGAGGGGGAATGGGAGAGGGGCGGTTTCATGGTTGGCTACC
AAACTCCAGGAGAGACAGAGTGCCCCAGAAGACGGTGTGTTTTGGATGGC
AGGGGCCGAGGACTGCTATCCAGATTGCCGGAGGGCTGCACGGCTTACTC
CACTTCCATAACGTCTGTTTCACGGGAGGAGGCGTGGGAGGAGTCTCGGG
AAAGAGCGCGAAGGAGCAGGGGGGGTCAAGGGTGTTATACTCAGGCATTT
CGAGAGGGACGCTGGGTGGTCATGGTAGACAACTAGCTGGGTTCTATGGC
CTGTTCACAGTAGAGAGATATCAACCGGATGCACTTTTTCTCCCTGCGGG
TGTTGAAGACACTTCCTTGTGCGGCGGAGTATCTTGGGGGGTCGTCTGCT
AGATGTTCGGGGGAGGGGGAATGGGAGAGGGGCGGTTTCATGGTTGGCTA
CCAAACTCCAGGAGAGACAGAGTGCCCCAGAAGACGGTGTGTTTTGGATG
GCAGGGGCCGAGGACTGCTATCCAGATTGCCGGAGGGCTGCACGGCTTAC
TCCACTTCCATAACGTCTGTTTCACGGGAGGAGGCGTGGGAGGAGTCTCG
GGAAAGAGCGCGAAGGAGCAGGGGGGGTCAAGGGTGTTATACTCAGGCAT
TTCGAGAGGGACGCTGGGTGGTCATGGTAGACAACTAGCTGGGTTCTATG
GCCTGTTCACAGTAGAGAGATATCAACCGGATGCACTTTTTCTCCCTGCG
GGTGTTGAAGACACTTCCTTGTGCGGCGGAGTATCTTGGGGGGTCGTCTG
CTAG
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