mRNA_E-fasciculatus_F_contig10406.327.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig10406.327.1
Unique NamemRNA_E-fasciculatus_F_contig10406.327.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig10406.327.1 vs. uniprot
Match: D8LTA2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTA2_ECTSI)

HSP 1 Score: 397 bits (1021), Expect = 7.080e-138
Identity = 228/271 (84.13%), Postives = 234/271 (86.35%), Query Frame = 1 
Query:    1 MMLARSISRVAAGSARRARDGQRVCISSLVGGCNSSSSMIPVDEPAAAAVRPKVGSRPAAGCGVAASAELSKVGSCRRRLSTGRPPFDMGEDENEVDVTPIGNKPGQITREAIAEAEASDDLDDDDIFSGKPSNWEYDASTEGAGHDGEEAEAGRXXXXXXXXEEDGNPPTPILDAYEKSRDPAEMERLIALAFDSLPERAGPQRYNHKRREHQRYRTIRNIKYKEKAQRAAAHERKLQKKRDRKARDLALFATWRET--------AVVRS 789
            MMLARSISRVAAGSARR  DGQR CISSLVGGCNS SSM  VDE AAA  RPKV SRPAA  GVA+  E SKVGSCRR LS+GRPPFDMGEDENEVDVTPIGNKPGQITREAIAEAEAS+DLDDDDIFSGKPS+WEYDASTE AGHD E+AEAGR        E D NPPTPILDAYEKSRDPAEMERLIALAFDSLPERAGPQRYNHKRREHQRYRTIRNIKYKEKAQR AAHERKLQK+RDRKARDLALFATWRET        AVVRS
Sbjct:    1 MMLARSISRVAAGSARRVHDGQRACISSLVGGCNSPSSMPAVDESAAA--RPKV-SRPAA-WGVASLPEPSKVGSCRRHLSSGRPPFDMGEDENEVDVTPIGNKPGQITREAIAEAEASEDLDDDDIFSGKPSDWEYDASTEEAGHDSEKAEAGREGFRDEGDEGDENPPTPILDAYEKSRDPAEMERLIALAFDSLPERAGPQRYNHKRREHQRYRTIRNIKYKEKAQRTAAHERKLQKRRDRKARDLALFATWRETGPAEETADAVVRS 267
[Close]
BLAST of mRNA_E-fasciculatus_F_contig10406.327.1 vs. uniprot
Match: A0A6H5JLM8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLM8_9PHAE)

HSP 1 Score: 152 bits (383), Expect = 9.970e-40
Identity = 80/97 (82.47%), Postives = 83/97 (85.57%), Query Frame = 1 
Query:  322 ITREAIAEAEASDDLDDDDIFSGKPSNWEYDASTEGAGHDGEEAEAGRXXXXXXXXEEDGNPPTPILDAYEKSRDPAEMERLIALAFDSLPERAGPQ 612
            ITREAIAEAEAS+DLDDDDIFSGKPS+WEYDASTE   HD EEAEAGR        E + NPPTPILDAYEKSRDPAEMERLIALAFDSLPERAGPQ
Sbjct:    8 ITREAIAEAEASEDLDDDDIFSGKPSDWEYDASTEEVRHDSEEAEAGREGLQDEGHEGEENPPTPILDAYEKSRDPAEMERLIALAFDSLPERAGPQ 104
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10406.327.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LTA2_ECTSI7.080e-13884.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JLM8_9PHAE9.970e-4082.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10406contigE-fasciculatus_F_contig10406:2507..4687 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-12_005800.1
Exons3
Model size792
Cds size792
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10406.327.1prot_E-fasciculatus_F_contig10406.327.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig10406 2507..4687 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927539.0696998-CDS-E-fasciculatus_F_contig10406:2506..27981622927539.0696998-CDS-E-fasciculatus_F_contig10406:2506..2798Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10406 2507..2798 +
1695995585.0165894-CDS-E-fasciculatus_F_contig10406:2506..27981695995585.0165894-CDS-E-fasciculatus_F_contig10406:2506..2798Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10406 2507..2798 +
1622927539.0828278-CDS-E-fasciculatus_F_contig10406:3531..38991622927539.0828278-CDS-E-fasciculatus_F_contig10406:3531..3899Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10406 3532..3899 +
1695995585.0268779-CDS-E-fasciculatus_F_contig10406:3531..38991695995585.0268779-CDS-E-fasciculatus_F_contig10406:3531..3899Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10406 3532..3899 +
1622927539.0958846-CDS-E-fasciculatus_F_contig10406:4555..46871622927539.0958846-CDS-E-fasciculatus_F_contig10406:4555..4687Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10406 4556..4687 +
1695995585.035775-CDS-E-fasciculatus_F_contig10406:4555..46871695995585.035775-CDS-E-fasciculatus_F_contig10406:4555..4687Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10406 4556..4687 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig10406.327.1

>prot_E-fasciculatus_F_contig10406.327.1 ID=prot_E-fasciculatus_F_contig10406.327.1|Name=mRNA_E-fasciculatus_F_contig10406.327.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=264bp
MMLARSISRVAAGSARRARDGQRVCISSLVGGCNSSSSMIPVDEPAAAAV
RPKVGSRPAAGCGVAASAELSKVGSCRRRLSTGRPPFDMGEDENEVDVTP
IGNKPGQITREAIAEAEASDDLDDDDIFSGKPSNWEYDASTEGAGHDGEE
AEAGREGFGDEGDEEDGNPPTPILDAYEKSRDPAEMERLIALAFDSLPER
AGPQRYNHKRREHQRYRTIRNIKYKEKAQRAAAHERKLQKKRDRKARDLA
LFATWRETAVVRS*
back to top

mRNA from alignment at E-fasciculatus_F_contig10406:2507..4687+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig10406.327.1 ID=mRNA_E-fasciculatus_F_contig10406.327.1|Name=mRNA_E-fasciculatus_F_contig10406.327.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2181bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10406:2507..4687+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGATGCTTGCGCGATCAATCAGCCGTGTTGCGGCTGGCTCTGCACGACG
CGCGCGTGATGGACAGCGGGTGTGCATCTCCTCCCTCGTTGGAGGATGCA
ACTCGTCCTCATCCATGATCCCTGTAGATGAGCCTGCCGCTGCTGCGGTG
CGACCCAAGGTCGGCAGCAGGCCAGCAGCAGGCTGCGGTGTTGCCGCGTC
GGCGGAGCTGAGTAAGGTCGGGAGCTGCCGAAGGCGTCTTTCGACAGGCC
GCCCGCCGTTTGACATGGGAGAAGACGAGAACGAGGTGGACGGTGAGCTG
CTTCCATGCTATCTCTATCTTTGGGTGAACCTCCCGAACAACATATATGC
ACCCATAGCACCGGCCTCCTCTACTGCTGTTGTTGTTGTAATTGTGCCGT
TTGTTCCCTCTCTGCGATCCCGCCGTCACGGGGTGCGTGCACAATAGCCG
CCGTGCTACTGTGTTACATGATGCACCACAGTGGGGGAAAAAATCCCTCT
GATTTCCTGAGATGGCCGAAGGCCATGCGGTCTGTATTTACATTGTGGCC
ATGAAATGGTAGGATCGGGCGTGTTCACTGAAGCTTGAAACAGGAAAACA
GGAACAAGTCTCGGGTGTTCCAGACCCAGAGCCTCCCTCCGCCCTCTCTC
CTCTCGTGCTGTTCCGGGCAGACTTATGCTTACCGCGCTCGTCAGGCAGC
AGTTGAAAGTGCGGTTTTGGTCAGGCGTTGCACGCCGCACCGAAGAAAAG
CAAAAATGCACTGCTGGCTAACTCCCCGCCGTAGCAACTGCTGTAGACTA
CAATCTAGACGTCACCACGACTTTTGGTTAATTTCCCATTTCGTGTCTAC
TACAGGTACGGCAGGCTGTAGCCGAGTGCGAACCGCCCATCACGAGAATG
GCATTTGGGGCGCGTCATGTCGGAACGCACCCAATGGCAATGACACCCAC
GCTACTTACTGTCCGACCCTCACATGTACCTCCTACCGTACCCACCCAAC
CCACCATCTCACTCTGTTTCACCAGTTACCCCGATCGGCAACAAGCCGGG
GCAGATAACCCGAGAAGCCATCGCCGAAGCGGAGGCCTCCGACGACCTCG
ACGACGACGACATCTTCTCCGGCAAGCCCTCCAACTGGGAGTACGACGCC
TCCACCGAAGGAGCAGGGCACGACGGCGAGGAGGCGGAGGCCGGCCGGGA
GGGGTTCGGGGACGAAGGCGACGAGGAGGACGGGAACCCCCCCACCCCCA
TCCTCGACGCCTACGAGAAGTCCAGGGACCCCGCGGAGATGGAGCGGCTG
ATCGCCCTGGCGTTCGACTCTCTCCCCGAGCGCGCCGGGCCGCAGAGGTA
CAACCACAAGCGCCGAGAGCACCAGCGGTATAGGACTATTAGGGTGAGTT
GAGTGGGTATTTTTTCGCGTCATACAGCGGGGAAAAAGTTCCGGAACTCT
CGTTGTATGTACGGTGTGCTTTTCTCCGACACCACCTCCCCTGTTGCCAT
GCCTGTGTGGAGTCGACCAAAACGAGGGTAAGAACACACCTCACAACAAG
TAACCTTTTCGGGTGTCGTCAATGACCTCGAGCACCATAACCCTGCCCCC
CCAAATACGCGCTGTGCCCGCCATGCATGCCCCCTTTTTCAGTCTGTTTC
TCGCAAGCAGCACCCTACCTCTTCCCTTCGTTCGTTTTTCTTGCCATGTG
TTTAGATACTTTGAACACGGCGTTAATTCTCCTGCGCACCTTGTTGTTGC
TTCCGATGAGAGATTCCTATTTACTGCCTCGTGTTGTCGTTCCGCACCGC
GCCCCTGAAAACACCCAAGCCGTGCCGTCCATGAACGGCTTGGCCCACCC
CTGCTGCTCTTGTGTAGGTTCCTTGTTTTGTCCACTACTCCGCGTCAACC
GCTGCTGCATTGCTGCCTACTTTTATCGAAGCAATTACATCACACGCCCG
GTTTGCTTTGCTTTGCTTTGCTTTGCTTTGCTTTGCTTTGCCTTGCTTTG
CTTTGCTTTGCTTTGCTGGGCACAACCAACCGAAAACGTCCGTCGGCAGA
ACATCAAGTACAAGGAGAAGGCGCAGCGGGCGGCGGCCCACGAGCGCAAG
CTGCAGAAGAAGAGGGATCGAAAAGCGCGAGACTTGGCGCTGTTCGCCAC
CTGGAGAGAGACAGCGGTTGTGCGCTCGTAG
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10406:2507..4687+

>mRNA_E-fasciculatus_F_contig10406.327.1 ID=mRNA_E-fasciculatus_F_contig10406.327.1|Name=mRNA_E-fasciculatus_F_contig10406.327.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1584bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10406:2507..4687+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGATGCTTGCGCGATCAATCAGCCGTGTTGCGGCTGGCTCTGCACGACG
CGCGCGTGATGGACAGCGGGTGTGCATCTCCTCCCTCGTTGGAGGATGCA
ACTCGTCCTCATCCATGATCCCTGTAGATGAGCCTGCCGCTGCTGCGGTG
CGACCCAAGGTCGGCAGCAGGCCAGCAGCAGGCTGCGGTGTTGCCGCGTC
GGCGGAGCTGAGTAAGGTCGGGAGCTGCCGAAGGCGTCTTTCGACAGGCC
GCCCGCCGTTTGACATGGGAGAAGACGAGAACGAGGTGGACGATGATGCT
TGCGCGATCAATCAGCCGTGTTGCGGCTGGCTCTGCACGACGCGCGCGTG
ATGGACAGCGGGTGTGCATCTCCTCCCTCGTTGGAGGATGCAACTCGTCC
TCATCCATGATCCCTGTAGATGAGCCTGCCGCTGCTGCGGTGCGACCCAA
GGTCGGCAGCAGGCCAGCAGCAGGCTGCGGTGTTGCCGCGTCGGCGGAGC
TGAGTAAGGTCGGGAGCTGCCGAAGGCGTCTTTCGACAGGCCGCCCGCCG
TTTGACATGGGAGAAGACGAGAACGAGGTGGACGTTACCCCGATCGGCAA
CAAGCCGGGGCAGATAACCCGAGAAGCCATCGCCGAAGCGGAGGCCTCCG
ACGACCTCGACGACGACGACATCTTCTCCGGCAAGCCCTCCAACTGGGAG
TACGACGCCTCCACCGAAGGAGCAGGGCACGACGGCGAGGAGGCGGAGGC
CGGCCGGGAGGGGTTCGGGGACGAAGGCGACGAGGAGGACGGGAACCCCC
CCACCCCCATCCTCGACGCCTACGAGAAGTCCAGGGACCCCGCGGAGATG
GAGCGGCTGATCGCCCTGGCGTTCGACTCTCTCCCCGAGCGCGCCGGGCC
GCAGAGGTACAACCACAAGCGCCGAGAGCACCAGCGGTATAGGACTATTA
GGTTACCCCGATCGGCAACAAGCCGGGGCAGATAACCCGAGAAGCCATCG
CCGAAGCGGAGGCCTCCGACGACCTCGACGACGACGACATCTTCTCCGGC
AAGCCCTCCAACTGGGAGTACGACGCCTCCACCGAAGGAGCAGGGCACGA
CGGCGAGGAGGCGGAGGCCGGCCGGGAGGGGTTCGGGGACGAAGGCGACG
AGGAGGACGGGAACCCCCCCACCCCCATCCTCGACGCCTACGAGAAGTCC
AGGGACCCCGCGGAGATGGAGCGGCTGATCGCCCTGGCGTTCGACTCTCT
CCCCGAGCGCGCCGGGCCGCAGAGGTACAACCACAAGCGCCGAGAGCACC
AGCGGTATAGGACTATTAGGAACATCAAGTACAAGGAGAAGGCGCAGCGG
GCGGCGGCCCACGAGCGCAAGCTGCAGAAGAAGAGGGATCGAAAAGCGCG
AGACTTGGCGCTGTTCGCCACCTGGAGAGAGACAGCGGTTGTGCGCTCGT
AGAACATCAAGTACAAGGAGAAGGCGCAGCGGGCGGCGGCCCACGAGCGC
AAGCTGCAGAAGAAGAGGGATCGAAAAGCGCGAGACTTGGCGCTGTTCGC
CACCTGGAGAGAGACAGCGGTTGTGCGCTCGTAG
back to top