mRNA_E-fasciculatus_F_contig1030.269.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1030.269.1
Unique NamemRNA_E-fasciculatus_F_contig1030.269.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1030.269.1 vs. uniprot
Match: D7FNL0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNL0_ECTSI)

HSP 1 Score: 469 bits (1206), Expect = 1.200e-160
Identity = 232/237 (97.89%), Postives = 233/237 (98.31%), Query Frame = 3 
Query:  306 MYSTKRVNKNIVEGNRFISVGDPYKELRRLPGRWKGKQFQTEGCPSNADNGNFAKLKYSSEPFQASTERFTKTQPLSKRNLGFGTKDAFKRGEFTATIRTQQYREMLRQEQRLMNASRNVKDEREKVAQAKAKHASSRRFVEGKEEIKHLYDVGRSLQNEFNPYRKHDAFYDFQKSTGKRMGPYRTMAQDIGNMAWDHRPTAPEFGPIGHIKNFYDRSHLEVAGEEARMVQPRARLR 1016
            MYSTKRVNKNIVEGNRFISVGDPYKELRRLPGRWKGKQFQTEGCP+NADNGNFAKLKYSSEPFQ  TERFTKTQPLSKRNLGFGTKDAFKRGEFTATIRTQQYREMLRQEQRLMNASRNVKDEREKVAQAKAKHASSRRFVEGKEEIKHLYDVGRSLQNEFNPYRKHDAFYDFQKSTGKRMGPYRTMAQDIGNMAWDHRPTAPEFGPIGHIKNFYDRSHLEVAGEEA MVQPR RLR
Sbjct:    1 MYSTKRVNKNIVEGNRFISVGDPYKELRRLPGRWKGKQFQTEGCPANADNGNFAKLKYSSEPFQE-TERFTKTQPLSKRNLGFGTKDAFKRGEFTATIRTQQYREMLRQEQRLMNASRNVKDEREKVAQAKAKHASSRRFVEGKEEIKHLYDVGRSLQNEFNPYRKHDAFYDFQKSTGKRMGPYRTMAQDIGNMAWDHRPTAPEFGPIGHIKNFYDRSHLEVAGEEAHMVQPRLRLR 236
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BLAST of mRNA_E-fasciculatus_F_contig1030.269.1 vs. uniprot
Match: A0A836CAI9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAI9_9STRA)

HSP 1 Score: 225 bits (573), Expect = 4.870e-66
Identity = 124/225 (55.11%), Postives = 155/225 (68.89%), Query Frame = 3 
Query:  306 MYSTKRVNKNIVEGNRFISVGDPYKELR-RLPGRWKGKQFQTEGCPSNADNGNFAKLKYSSEPFQASTERFTKTQPLSKRNLGFGTKDAFKRGEFTATIRTQQYREMLRQEQRLMNASRNVKDEREKVAQAKAKHASSRRFVEGKEEIKHLYDVGRSLQNEFNPYRKHDAFYDFQKSTGKRMGPYRTMAQDIGNMAWDHRPTAPEFGPIGHIKNFYDRSHLEVAG 977
            MYSTKRVN  I EG  +ISVGDPY+  +  LPGRWKGK F+    P NA+NGNF+KL+Y S  FQ   ER++KTQP  K+  GFGTKDAF+RGEFTATIRT+QYR+ LR+EQ +M    +   + E + +A+ K  S+R F EG  E  HLYDVGR+   +F+P    D FY    +  +RMG +RTMAQDIG+ AW H+  +PEFGPI H K F+DRSHL V G
Sbjct:    1 MYSTKRVNDKIAEG--YISVGDPYRGTKDTLPGRWKGKGFKVLQVPVNAENGNFSKLEYKSCAFQE-MERYSKTQPDRKK--GFGTKDAFRRGEFTATIRTEQYRDQLRKEQTIMAKFCDPVRDSEIIRRAEEKQRSTRTFCEGLPETDHLYDVGRTQVTKFDPKHSRDRFYTPDINRERRMGGFRTMAQDIGDGAWSHKYKSPEFGPIHHTKLFWDRSHLTVEG 220
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1030.269.1 vs. uniprot
Match: D7G5S6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5S6_ECTSI)

HSP 1 Score: 218 bits (555), Expect = 1.740e-63
Identity = 112/213 (52.58%), Postives = 144/213 (67.61%), Query Frame = 3 
Query:  336 IVEGNRFISVGDPYKELRR-LPGRWKGKQFQTEGCPSNADNGNFAKLKYSSEPFQASTERFTKTQPLSKRNLGFGTKDAFKRGEFTATIRTQQYREMLRQEQRLMNASRNVKDEREKVAQAKAKHASSRRFVEGKEEIKHLYDVGRSLQNEFNPYRKHDAFYDFQKSTGKRMGPYRTMAQDIGNMAWDHRPTAPEFGPIGHIKNFYDRSHLEV 971
            +V+G  +IS+GD YK  +  LP RWKGK       P NA+NGNF++L+Y SEP+ A  E+F+KTQPL KR LGFGTKDAF+ GEFTATIRT+QYR++LR E+ +M   R+   ++    + +   A  R F +G +EI+HLYDVGRS   EF+P    D FY       KR GPYRTMAQDIG+ AW H   +PE GPI H+K FYD+SHL +
Sbjct:    1 MVDGGSYISIGDMYKGNKIILPDRWKGKGLSVPQLPKNAENGNFSRLEYRSEPY-ADMEKFSKTQPLDKRKLGFGTKDAFRPGEFTATIRTEQYRDLLRAEKNIMEKHRDPAKDQAAAQKYEKDCAEHRAFPDGLKEIEHLYDVGRSQVTEFDPKNSRDRFYTLSIGQEKRRGPYRTMAQDIGSGAWGHTYQSPEHGPIHHVKFFYDKSHLSL 212
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1030.269.1 vs. uniprot
Match: A0A6V1R9I1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1R9I1_HETAK)

HSP 1 Score: 206 bits (523), Expect = 1.020e-58
Identity = 106/224 (47.32%), Postives = 146/224 (65.18%), Query Frame = 3 
Query:  306 MYSTKRVNKNIVEGNRFISVGDPYKELRRLPGRWKGKQFQTEGCPSNADNGNFAKLKYSSEPFQASTERFTKTQPLSKRNLGFGTKDAFKRGEFTATIRTQQYREMLRQEQRLMNASRNVKDEREKVAQAKAKHASSRRFVEGKEEIKHLYDVGRSLQNEFNPYRKHDAFYDFQKSTGKRMGPYRTMAQDIGNMAWDHRPTAPEFGPIGHIKNFYDRSHLEVAG 977
            MY+TKR+NKN ++ + +IS+ DPY E R+LP RWK KQF     P+  + G FAK  Y+ +P++ +   F K QP   R LGFGTKDA KRGEFTATIRT+QYRE L++EQR+++  R+   E   + +A+ K    R F EG  E + LYD+GR    +F+P +  D FY  +K   KR+G ++T A  +G+ AWDH  + PEFGPI ++KNFYD+ HL   G
Sbjct:    1 MYATKRINKNKIDVS-YISIQDPYVENRKLPPRWKEKQFAVAHLPNPENGGYFAKKTYAPDPYKEAVH-FIKEQPADSRKLGFGTKDASKRGEFTATIRTEQYRETLKKEQRILDHQRDPAAETMTLERAR-KREEERSFPEGLSETRRLYDIGRQNVTDFDPRQSRDTFYTLRKDRPKRLGHHQTAAAAVGSGAWDHEYSKPEFGPIPYVKNFYDKGHLGTQG 221
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BLAST of mRNA_E-fasciculatus_F_contig1030.269.1 vs. uniprot
Match: A0A7S2XZN8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZN8_9STRA)

HSP 1 Score: 195 bits (496), Expect = 9.000e-55
Identity = 101/226 (44.69%), Postives = 147/226 (65.04%), Query Frame = 3 
Query:  306 MYSTKRVNKNIVEGNR-FISVGDPYKELRR-LPGRWKGKQFQTEGCPSNADNGNFAKLKYSSEPFQASTERFTKTQPLSKRNLGFGTKDAFKRGEFTATIRTQQYREMLRQEQRLMNASRNVKDEREKVAQAKAKHASSRRFVEGKEEIKHLYDVGRSLQNEFNPYRKHDAFYDFQKSTGKRMGPYRTMAQDIGNMAWDHRPTAPEFGPIGHIKNFYDRSHLEVAG 977
            MY T R +KN+++ +  ++++GDPY +  R +P RWK KQF  +  P+   +G F + KY  E ++   E + K+QP  +R  GFG+ DA +RGEFT+TIRT+QYRE L+QE R+    R+ + ER+ +A A A+    R F EG  E +HLYD+G+    EF+P    D FY  +K   KR+G + T +Q +G+ AWDH+ T PEFGPI ++KNFYDRSHL++ G
Sbjct:    1 MYRTHRTHKNLLDKDASYVTIGDPYIDPNRTIPPRWKEKQFVVQHKPALKQSGYFEEFKYQPEEYKE-MESYLKSQPQDRRKNGFGSHDATRRGEFTSTIRTEQYRETLKQELRVHEKQRDPESERKVMAIA-AEREMGRTFTEGLTETRHLYDIGKKQVTEFDPRSSRDTFYVMRKDRPKRLGAHTTSSQAVGDGAWDHKYTKPEFGPIPYVKNFYDRSHLQIEG 224
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BLAST of mRNA_E-fasciculatus_F_contig1030.269.1 vs. uniprot
Match: A0A7S2EF12_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EF12_TRICV)

HSP 1 Score: 184 bits (466), Expect = 3.210e-50
Identity = 100/240 (41.67%), Postives = 146/240 (60.83%), Query Frame = 3 
Query:  306 MYSTKRVNKNIVEGNR--FISVGDPYKE-LRRLPGRWKGKQFQTEGCPSNADNGNFAKLKYSSEPFQASTERFTKTQPLSKRNLGFGTKDAFKRGEFTATIRTQQYREMLRQEQRLMNASRNVKDEREKVAQAKAKHASSRRFVEGKE--EIKHLYDVGRSLQNEFNPYRKHDAFYDFQKSTG-----------KRMGPYRTMAQDIGNMAWDHRPTAPEFGPIGHIKNFYDRSHLEVAG 977
            MYSTK ++KNI    +  + S+GDPY+  +  LP RWK KQF T  CP NA NG F K +Y+ +P+    E+++KTQPL KR LGFG+ DAFK GEFT+   T++YR ++RQEQ+L+++ R+   ERE + + + +  ++ +   GK+  E K LYDVGR+    ++P    D+FY   K              +R+G +R M+  IG  AW H+   PEFG + +I+ FYDR H+E  G
Sbjct:    1 MYSTKSIHKNINPNYQQTYTSIGDPYRNSVEELPSRWKKKQFVTPKCPKNAYNGLFVKPQYTPDPYTERAEQYSKTQPLEKRRLGFGSHDAFKPGEFTSDKATERYRNVVRQEQKLLDSVRDEMRERELIQKLRDRPRTTPKDKLGKDLKEPKFLYDVGRTHVTLYSPQSTRDSFYKLPKHAPVDPKLKGLDPIRRLGSHRPMSASIGEQAWRHKYAKPEFGQVKYIEKFYDRGHIECKG 240
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1030.269.1 vs. uniprot
Match: A0A7S2CP23_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CP23_9STRA)

HSP 1 Score: 167 bits (424), Expect = 3.110e-44
Identity = 103/243 (42.39%), Postives = 139/243 (57.20%), Query Frame = 3 
Query:  306 MYSTKRV-NKNIVE------GNRFISVGDPYKE-LRRLPGRWKGKQFQTEGCPSNADNGNFA----KLKYSSEPFQASTERFTKTQPLSKRNLGFGTKDAFKRGEFTATIRTQQYREMLRQEQRLMNASRNVKDEREKVAQAKAKHASSRRFVEGKEEIKHLYDVGRSLQNEFNPYRKHDAFYDFQ-------KSTGKRMGPYRTMAQDIGNMAWDHRPTAPEFGPIGHIKNFYDRSHLEVAG 977
            MYSTK   NKN VE       +++IS+GDPY + + +LP RWK  QFQ +  P NA NG F        Y+S+P++  T  +   QP  KR +GFGTKDA KR EF ATIRT+QYRE L++E  +++  R+   E+E     K ++  S  FV G  E ++LYD+GR+    FNP    D FY  +       K    R+GPY T +  IG  AW+   + P+FG +   KNF D+SHL VAG
Sbjct:    1 MYSTKIASNKNAVEMGDTKPHDKYISIGDPYVDRVGKLPERWKKPQFQIDRMPKNAGNGYFGYNNKDFTYASDPYKE-TRSYKAEQPPEKRTMGFGTKDASKRDEFAATIRTEQYRETLKRENTILDEQRDR--EKEAALMEKLRNTKSE-FVPGLTETEYLYDIGRTQSTPFNPKSAGDRFYQRRLNKDLDPKQGSMRLGPYMTSSSQIGTGAWETPYSKPQFGTVSPTKNFNDKSHLSVAG 239
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1030.269.1 vs. uniprot
Match: A0A8J2SVQ1_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SVQ1_9STRA)

HSP 1 Score: 152 bits (383), Expect = 4.050e-38
Identity = 98/272 (36.03%), Postives = 144/272 (52.94%), Query Frame = 3 
Query:  207 GDTTFLHEEDSWQDKPHER*WPGQSGFLTVPRTMYSTKRVNKNI-VEGNRFISVGDPY-KELRRLPGRWKGKQFQTEGCPSNADNGNFAKLKYSSEPFQASTERFT------KTQPLSKRNLGFGTKDAFKRGEFTATIRTQQYREMLRQEQRLMNASRN--------VKDEREKVAQAKAKHASSRRFVEGKEEIKHLYDVGRSLQNEFNPYRKHDAFYDFQKSTGKRM--GPYRTMAQDIGNMAWDHRPTAPEFGPIGHIKNFYDRSHLE 968
            GD +FL + D  + +        + G+      MY+ K  +  +  E  R+IS+GDPY  E  RLP RWK KQ  T   P NA NG F  +    +PF    +++       KTQP   R LGFGT DA KR EFT  +RT+QYR++L++E+R++  +          ++   +K+A+A A     +R V G      LYD+GRS + +F+P  K D FY+  ++  + M  G YR+M+QDIG+ AWD +     FG       FY +SH+E
Sbjct:    2 GDDSFLGDRDIVRQR-----MIAEKGYTNHLAGMYADKFTHPRLQCEAGRYISIGDPYVDEAERLPARWKEKQMGTTMYPKNAGNGYFGNM---GKPFMYMPDKYVEQLPYAKTQPYDTRKLGFGTHDASKRDEFTDRVRTEQYRDLLKREKRILQRNEQKRGGLAEQIRKAHKKLAEA-AVEEERQREVCGLSAAPFLYDIGRSRETQFDPKTKTDCFYNAYQARKREMRRGGYRSMSQDIGDGAWDLQQKRETFGRSHATAAFYSKSHIE 264
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BLAST of mRNA_E-fasciculatus_F_contig1030.269.1 vs. uniprot
Match: A0A482RVI8_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RVI8_9ARCH)

HSP 1 Score: 149 bits (377), Expect = 1.130e-37
Identity = 91/234 (38.89%), Postives = 139/234 (59.40%), Query Frame = 3 
Query:  306 MYSTKRVNKNIVEGNRFISVGDPYKELRRLPGRW--KGKQ---FQTEGCPSNADNGNFAKLKYSSEPFQASTERFTKTQPLSKRNLGFGTKDAFKRGEFTATIRTQQYREMLRQEQRLMNASRNVKDEREKVAQAKAK--HASSRRFVE----GKEEIKHLYDVGRSLQNEFNPYRKHDAFYDFQKSTGKRMGPY-RTMAQDIGNMAWDHRPTAPEFGPIGHIKNFYDRSHLEV 971
            MYS+K V+K++V  N +I+VGDPY + +  P R   KG++   FQ++G P NA+ G F K  Y  E ++   +  T TQPL +R LGFGTKDA KR EF++  RT+QYRE LR+E+ +  +   VK++  K+   +A    A+  R+      G + I+  YD+GR+   +FNP    D FY F +  G+  G   + ++ ++G  AW+ +   P FG  G +KNF+D+SHL+ 
Sbjct:    1 MYSSKLVHKSMVANNAYITVGDPYHDPKANPFRQGKKGEKLTPFQSKGIPQNAELGYFTKKSYVPEGYKEGIKYIT-TQPLDQRKLGFGTKDAHKRDEFSSNNRTEQYRETLRKEKEMAESPEVVKEKLTKLLAERATMDFATQTRYTNTLSGGPKRIRQ-YDIGRTQVTDFNPKATRDKFYRFDEEHGRYFGDLAQPISCEVGAAAWETQYRPPAFGGKGEVKNFFDKSHLQT 232
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1030.269.1 vs. uniprot
Match: H3HED5_PHYRM (Uncharacterized protein n=19 Tax=Phytophthora TaxID=4783 RepID=H3HED5_PHYRM)

HSP 1 Score: 129 bits (323), Expect = 2.420e-30
Identity = 87/230 (37.83%), Postives = 124/230 (53.91%), Query Frame = 3 
Query:  306 MYSTKRVNKNIVEGNRFISVGDPYKELRRLPG---RWKGKQFQTEGCPSNAD-NGNFAKLKYSSEPFQASTERFTKTQPLSKRNLGFGTKDAFKRGEFTATIRTQQYREMLRQEQRLMNASRNVKDEREKVAQAKAKHASSRRFVEGKEEIKHLYDVGRSLQNEFNPYRKHDAFYDFQKSTG---KRMGPYRTMAQDIGNMAWDHRPTAPEFGPIG-HIKNFYDRSHLEV 971
            MYSTK +NKNI +   ++++GDPY++   + G   R KGKQ  T    +  + +G F K  YSS+P Q +T  + K+QP+  R  GFG+KDA +R EF + IRT+QYRE L  E ++++  +   ++   +  A      S  F EG +E KHLYD+GRS   EFN     D FY  +       +  GP+   ++ IG  A D     P   P G   K FYD SHL +
Sbjct:    1 MYSTKVLNKNIAQS--YLTIGDPYRDPHLIEGKNSRHKGKQVLTVPAKNTCNGSGYFDKKTYSSDPLQDNTA-YLKSQPMDSRKSGFGSKDASRRDEFMSHIRTEQYRETLHTEVKILDKQKQ--NDPPGLFDALDSLNQSHTFPEGLQETKHLYDIGRSQNTEFNQKSHRDTFYTMRVGNSQYKRNNGPFMLTSESIGLGADDVTGNRPN--PKGASTKQFYDHSHLHI 223
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1030.269.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
D7FNL0_ECTSI1.200e-16097.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CAI9_9STRA4.870e-6655.11Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7G5S6_ECTSI1.740e-6352.58Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6V1R9I1_HETAK1.020e-5847.32Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2XZN8_9STRA9.000e-5544.69Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2EF12_TRICV3.210e-5041.67Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S2CP23_9STRA3.110e-4442.39Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A8J2SVQ1_9STRA4.050e-3836.03Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A482RVI8_9ARCH1.130e-3738.89Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
H3HED5_PHYRM2.420e-3037.83Uncharacterized protein n=19 Tax=Phytophthora TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1030contigE-fasciculatus_F_contig1030:5254..11023 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score470.7
Seed ortholog evalue4e-130
Seed eggNOG ortholog2880.D7FNL0
EggNOG OGs290NK@1,2S4NB@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-01_005080.1
Exons7
Model size1910
Cds size714
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927531.0185792-UTR-E-fasciculatus_F_contig1030:5253..53491622927531.0185792-UTR-E-fasciculatus_F_contig1030:5253..5349Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1030 5254..5349 +
1695995581.0657487-UTR-E-fasciculatus_F_contig1030:5253..53491695995581.0657487-UTR-E-fasciculatus_F_contig1030:5253..5349Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1030 5254..5349 +
1622927531.0475621-UTR-E-fasciculatus_F_contig1030:5967..61761622927531.0475621-UTR-E-fasciculatus_F_contig1030:5967..6176Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1030 5968..6176 +
1695995581.0767047-UTR-E-fasciculatus_F_contig1030:5967..61761695995581.0767047-UTR-E-fasciculatus_F_contig1030:5967..6176Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1030 5968..6176 +
1622927531.1526663-UTR-E-fasciculatus_F_contig1030:10132..110231622927531.1526663-UTR-E-fasciculatus_F_contig1030:10132..11023Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1030 10133..11023 +
1695995581.15185-UTR-E-fasciculatus_F_contig1030:10132..110231695995581.15185-UTR-E-fasciculatus_F_contig1030:10132..11023Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1030 10133..11023 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927531.0577536-CDS-E-fasciculatus_F_contig1030:6176..63071622927531.0577536-CDS-E-fasciculatus_F_contig1030:6176..6307Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1030 6177..6307 +
1695995581.0851357-CDS-E-fasciculatus_F_contig1030:6176..63071695995581.0851357-CDS-E-fasciculatus_F_contig1030:6176..6307Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1030 6177..6307 +
1622927531.0780432-CDS-E-fasciculatus_F_contig1030:7771..78381622927531.0780432-CDS-E-fasciculatus_F_contig1030:7771..7838Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1030 7772..7838 +
1695995581.0941238-CDS-E-fasciculatus_F_contig1030:7771..78381695995581.0941238-CDS-E-fasciculatus_F_contig1030:7771..7838Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1030 7772..7838 +
1622927531.0917382-CDS-E-fasciculatus_F_contig1030:8122..82351622927531.0917382-CDS-E-fasciculatus_F_contig1030:8122..8235Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1030 8123..8235 +
1695995581.1030881-CDS-E-fasciculatus_F_contig1030:8122..82351695995581.1030881-CDS-E-fasciculatus_F_contig1030:8122..8235Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1030 8123..8235 +
1622927531.1025558-CDS-E-fasciculatus_F_contig1030:8422..84741622927531.1025558-CDS-E-fasciculatus_F_contig1030:8422..8474Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1030 8423..8474 +
1695995581.112994-CDS-E-fasciculatus_F_contig1030:8422..84741695995581.112994-CDS-E-fasciculatus_F_contig1030:8422..8474Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1030 8423..8474 +
1622927531.1165547-CDS-E-fasciculatus_F_contig1030:9251..94131622927531.1165547-CDS-E-fasciculatus_F_contig1030:9251..9413Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1030 9252..9413 +
1695995581.1225364-CDS-E-fasciculatus_F_contig1030:9251..94131695995581.1225364-CDS-E-fasciculatus_F_contig1030:9251..9413Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1030 9252..9413 +
1622927531.1319118-CDS-E-fasciculatus_F_contig1030:9943..101321622927531.1319118-CDS-E-fasciculatus_F_contig1030:9943..10132Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1030 9944..10132 +
1695995581.139561-CDS-E-fasciculatus_F_contig1030:9943..101321695995581.139561-CDS-E-fasciculatus_F_contig1030:9943..10132Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1030 9944..10132 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1030.269.1prot_E-fasciculatus_F_contig1030.269.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1030 6177..10132 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1030.269.1

>prot_E-fasciculatus_F_contig1030.269.1 ID=prot_E-fasciculatus_F_contig1030.269.1|Name=mRNA_E-fasciculatus_F_contig1030.269.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=238bp
MYSTKRVNKNIVEGNRFISVGDPYKELRRLPGRWKGKQFQTEGCPSNADN
GNFAKLKYSSEPFQASTERFTKTQPLSKRNLGFGTKDAFKRGEFTATIRT
QQYREMLRQEQRLMNASRNVKDEREKVAQAKAKHASSRRFVEGKEEIKHL
YDVGRSLQNEFNPYRKHDAFYDFQKSTGKRMGPYRTMAQDIGNMAWDHRP
TAPEFGPIGHIKNFYDRSHLEVAGEEARMVQPRARLR*
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mRNA from alignment at E-fasciculatus_F_contig1030:5254..11023+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1030.269.1 ID=mRNA_E-fasciculatus_F_contig1030.269.1|Name=mRNA_E-fasciculatus_F_contig1030.269.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=5770bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1030:5254..11023+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGAGAATCTCCACAACAATTGACTCTCGTCGAAGAACGAGGACGGAGAGT
TGCATCTCCTGTGGGCTGGATTCTCTCCCTTACCTCCTCGTCACAGGTCA
GGTGTCGATGTGTCTGTCTCCTCTTATTCGTGAGCTCACAGCAGTCAGCC
TGGTGTGGTTGTACCAGTTCCTCGGCTCCCCCCTGTTCGTGCTTTTGTGA
CATGTCTCCGTCTTTATGCAAACTGTACGTGGTGCGCACGCGTACATGAA
TCGGTCATTGTGTCGCATGTTTGACATGTTTTTGTAAGGCATGGCTGACA
ATGATGTGTAGGGTGTGTACCAGCGTATTATGGTTATAGACCACGTTTCG
ATGGCTCCTGCGAAACTGAGATCGAGGCACACGTAATATAAGAGAAGATC
TTTGCCCATTCACTGCTGTCCGCACAAAGGCTGAGCAACGAGCAAAGCGA
TTTCGGGGATTCTTGGTGCATGTAGCATACATTGAGTGCATGCAGTCTAC
CTCTAGACATATGATACTGCTGTAGCAAGACCTATATTGTTCTACAAACC
GAGTGCTGACGCTGTTAATCGGTTTGAATGCTTTGCACGCGCAGTCAACT
GTTGTTTGAGCGTCTGTACTGAACGGACACCAACTTCGCATGACTCCACA
TTCGAGGCTCTCCCCGGCACACTAACCCCGCGCTGTTGCCGAAATTCACA
CGCCACACGCACAGACTGAATCAACCCTACTCAAGGGTACATCGGGGTCG
GAGGTAACACGGGACGACTAAAGGTATATCTCGTGTTGGGCACGGCAACC
TCATCACCCTTCTTCTTTGCTCGGGGCGATACGACCTTCTTACACGAGGA
AGACAGCTGGCAAGATAAACCACATGAACGGTAGTGGCCCGGCCAGTCGG
GGTTTCTTACAGTACCACGAACCATGTACAGCACCAAGCGCGTGAACAAG
AACATTGTCGAAGGGAACAGGTTCATTTCCGTCGGAGACCCTTACAAGGA
GCTAAGGAGGTTGCCCGGTCGCTGGAAGGGCAAGCAGTTTCAGACCGAGG
GATGGTAAGTGGAGCAGCCGCGCGGTTTGCGACCATCGTCCTCCCGTTCA
TGCATGAAAACCCGCAAGCTATGGTCTGTAAAAAAACGCTGGTTTGCTTG
TTGTGCTGTACCACGCCCCGCGGCGACACCAGAAAGGTTCCACTCCTATC
CCCCCCCCACGATACAAGCGTGTACCACGCAGTCTTTTCAATGCTCGTTG
TATGGCAAATGAAACACATTAATTAAATACCGTAAATATCCCCTCCCCCC
CATCCCCCCTTAGGTCAGTGGTCTAACGAATACGGCATGCACGACTATGA
GTACACCCCATCCCCCCTCCATTCTCAGGGGATGAAGCACGGGTAGAGGA
TTGGCTGAAAACAGTTAAAATGAGATAAGAAGCTTGCAACAACTCCCGAC
ATACTACTTGTGTGTCTCAACACCGACTTGGAAAAGGGCTCCGTCTCCAA
AGCGGTGCACGGTCAAAACAGTCTCGAAATAGCTGCAGTATGGCAAGCAG
TAATAATCGAGATCGACCATCGCCCCCCCTTGAGCTCCTTTGCCTCTCTA
GAGCTCGCCAAAATCCGGAAACGAACAAACACAATAAGATCGATGTTTTG
CATACACTTGGACTCCCCCCCCCCCCCAAGAGGTTACCGCTCCCCGAGTG
ACTCTCGATCGCTTACCGAGAGGGGGAGATCTGTGTGTAGTTGATATTTA
CGCCGCCAAATAGTTAGAATCGTCATTTTCCATCGTTGGAATGCTTCAGA
AGATGAAACCATTGGCAGGAACAACACTAAGCAGGGTCGCTGCACGCAGC
CGTGGTTACCCACTTCGGTACCAACTGCGAGGGTTCTCTACAACCTGGGC
GAGGCCCTCAATCCACTCCCCCCAGACGTTGCGCCCTTCATCGTTGTGTT
GTTGATATCTTTACATGAAAAAATAAGCCGTTGTTGACCTCTACCCAGCA
CGCTACTCCAAACGGTTGTAAAACTGCTGTTCCACTCTCTCCTTGGCGTT
TCTCCAGCTGCTGGTGTTCTGCACACCTCTTTCGGTTTCAAAACAACTTC
CCGCTCTCCCCTTTGCCCCTAATTGGCTCAAATGTGTAGAAACCAAAACG
AGGGAGGGGGGGGCATGGGTCTAGCGGCTATAGAATACCTCTACGATTCA
CACCGGGGGTCAACAGTGCAACGTCCCACGACACAAACCCGCGAACAATC
TCGTCCCGTCCCTTCCTCCATCGGAGGCTTCTGTTCAAACACCAACACTC
ATTTCTTTTCAGCGCGGAGAAACGTGTCTGTGAAAGGAGACCAGTTCTCT
TGTTGTCCGCAATGACGCAGTCCGGCAGAAAATAAACCCCTACAGTGGAA
GCGCTTTGTTCCCGCCTACGAAGTCGCATCACGGCGAAGACTCCACGATC
GAACCTCGCAGGTTGACCGACCCCCTCTTTTTTCCTTTCTCGTCCTCGCC
GTCTTCCTTCTGTCACAGCCCGTCGAACGCAGATAACGGGAATTTCGCCA
AGCTCAAGTACTCCTCAGAGCCGTTCCAGGCAAGTGTGTGTGCCTGTAGG
CCGACTTGAACCAGTGGGAACCATGGCAGGAGGTGTCTTTACTGCAGAAC
TTGCTTCCCGTAGGTTAACACGAGGAAAGGTACACGAGGCTGGCGTCAGA
GCCATGAAACTTTCCGATTAGACTAAATTTGTGTGAATAGGGAAGCAGGA
AACGGCACCTGCATGATGGCTCCTTCCTTGTTGATCGACGCGTTGCAGGT
TGGTGCTTTCGCCGACAGGTTTTGTACCACCCATGCCCATACGCTTGCTA
TTCTCCGTGGTTACAGGAGACAGAGCGGTTCACCAAGACGCAGCCGCTGA
GCAAGCGAAACCTTGGTTTCGGCACCAAAGATGCTTTCAAGAGGGGGGAG
TTTACGGCCACCATTCGAACGCAGCAGTACAGGTACATTTGAAAAAAGTA
TCTGGACGTCGTGTCCACGTAGTAAACAGACTTCGCGCGCTGTGCTTAAA
GTCCTTTTTGGACGGAATCAAGAGCTTGTTCCTCCATGTTTTAATACGCT
TTACGTGCGCTCAACGACTCATTGGCCGCCATCCCGTCGCCATCGCACGT
TGGTTTGACAAATGGAAAGGGAAATGCTCCGCCAGGAGCAGCGGTTGATG
AACGCATCACGGAACGTAAAGGTAAGAAATGATGAAAGCAAGTTATTAGG
CTCAGGGCCGTGTGGTCCGTGCATGCTGTAGCAAGAGATGTTGAAGTCAG
GGTGCTGATTGCTGATTGATGTCGGTGGGGTTCGAAACGCTACCCCGGAG
CAGGAACGACGGAGGGTCTCTCTCTCGCATCGCAGAACACCTGATGAGAA
AATAATCGAACAAATTAGCTCCCTATTGTCCTGTCTTTTGTAGGGTGAGC
GTGTCCGGGAAGGACGGATTTGTCCACCCGATTCTGTTGCAACTAGAGGT
TAGCCGAGGAGGAGAGGAGGGTGGCCTTTCACCCCGTTACAATACTAGAT
ATGAATTTCCGACACACTCATTTTCAGGCGCTTGTTCCTCAAGCAACGTG
ACACGTTCGGACACCCCGGGAAAAGGAGCAGACGCGAGATCTCGCCTAGT
AAACTGCTACGTACAGAACCCACCTTCGTGCACGTGAAGGGGTTCATGGG
CGTGACCGAGCAGCTGCACGGACTATCGGTCGCCCTACTGAGCGACTAAT
CAGCACCGCGACAACCAATGTTCTGGAAGAACAGCTGTAAAACAAACAGC
TGTAGGGCATTTAAAGACAATCACCCTTTCTGTGGAAATCTGTGCCTGAT
CAGAAAATCCACGGACGCCCGTGTTCGTCTTGTTGTGCGCGGCCGAAAGA
CTGAAAGGGTTTGCCATCGTTCAACCGGTTCGCGCGGTCGGTGCTATTTC
AAAAGTACACACATACACAACAACACGCTCCCACGACACGCCTGGCAGGA
CGAGCGAGAGAAGGTGGCACAGGCGAAAGCCAAGCACGCCTCCTCGAGAA
GATTCGTTGAAGGGAAGGAGGAGATCAAGCACCTGTATGACGTCGGCCGC
TCCCTTCAAAATGAATTCAACCCTTATCGAAAACACGATGCGTTTTACGA
CTTTCAGAAGGTGAGTGTGTATCGCCAGCGATGCTTATTGGCCGGCTGTT
CCAAGGCTTAAAATCCCTAGCCACAGAATATCTCAAGGGATCTTTGAACC
AGTAAACATCGGCGTAGTTTCTTGGCATTCGCGTGTGCTGTTGTACGCCG
CGGCAGTTATTTCATGTTCCGTGCAAAGCCTGCCTCGAGCAACGTAAGCA
CTTGTTTTTGGGATTTCAGACGACAAAACCGCGTTACTATCGTTCTTTTC
TTTAGACACAAAACATTTGCACAATTGTATGTTCATTTTCATGTTGTTTT
CTAGTCTGTGCATGCGTTTTCTTCGTAGGGATACAGGTGAGCCAACTGTT
CAGAAACTGGCGAAGAGGTGGATTCAAAAACGCGAACAGTTTCGAAACAG
CAACAACAACAGTAGCAACGGAAACAACCAAAATTGATCAACAGAGACTT
GAACGGCGCAAACAACAACAGCAGTTTATTTCATAGGTGTATCTCGCCGC
TTTTTCTGCATTCGCGACAATCAACACCCTGCCAAAAAAGTCCACAGGGA
AGCGTATGGGGCCGTACCGCACCATGGCCCAGGACATTGGGAACATGGCG
TGGGACCATCGCCCGACGGCTCCAGAGTTTGGGCCGATAGGCCACATCAA
GAACTTCTACGACCGCAGTCACCTCGAGGTGGCCGGGGAGGAGGCCCGTA
TGGTCCAGCCGCGGGCGCGTCTGCGTTGACTGGGCATTGAAAACTTTGGA
AACAAGCCAATAGGCCTGATGATTGAACGATTTTGGGTGAAATGTGCAAC
AAGTGTCCTGAAATTTGAAAAATTTGGAAACGAAGGGGCAAGCGTGCTGC
CGCTTTGCGTTGATGGAGTTCAAAACAGCTTTGAAAGCACGCGATGTGCG
CAGCACGTGCACACGATTGTTTCGTGGACACGATGAGGTGTTCTAGTTGT
TCTTGAGCATTTGTCGAAGGAAACTATACTAGAGAATAAGGGCGGGTCCA
GGTATTCCTGTGTTTGCTCTCTCGCGCAAACCCGGAGCGCCATCTTCCCG
GAGATGCCACAACTCCTCTCCGTAACGAGTGTTATTTCGTAGCGACGAAT
ATTGACGACAATTTATCATATTACAACAAGTGTTTTGGGTCCATAGTAGG
AACGTCGACAAGATCAGCAATTTTTGATTGTTCGTCGTTGCTCTCTGTTT
GGTATTTTGTCATTCGTGTCGTTATGTCATCGCTGCCGCTACTTCCCGTT
GTACCGGAGCCTTGTCGGTTGCTATCGTATCAGAGACCGAGTATGTACTT
TTTCCGAGGAGGTGGAGAAGTACAAGCCATGACAGAAACGTGTTAGTCAC
GGAAACGACGAGGAATAGTTTCATTTTGATCGCGAAGCATACGGAGGAGA
TCTGTCGGGGAGAGACAGAGGCGCCAAAACAAATGACCCCGTGAAGAAAA
GGTCAAACGACAGAGCGCGTTGATTCGCGGTTGGAAACCGCGACTTCACT
GCGGTTGTTTGTCTGAGTGATGGCGCTGTTTGAGCATGTGGAGGAATGTA
TGGAGAGTCGCGCTGCCCTGCTCTTATTATGTAGGGGCCTAGACTAAAAT
AGTAAGAGGGTGTGGCTGAC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1030:5254..11023+

>mRNA_E-fasciculatus_F_contig1030.269.1 ID=mRNA_E-fasciculatus_F_contig1030.269.1|Name=mRNA_E-fasciculatus_F_contig1030.269.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1428bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1030:5254..11023+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTACAGCACCAAGCGCGTGAACAAGAACATTGTCGAAGGGAACAGGTT
CATTTCCGTCGGAGACCCTTACAAGGAGCTAAGGAGGTTGCCCGGTCGCT
GGAAGGGCAAGCAGTTTCAGACCGAGGGATGATGTACAGCACCAAGCGCG
TGAACAAGAACATTGTCGAAGGGAACAGGTTCATTTCCGTCGGAGACCCT
TACAAGGAGCTAAGGAGGTTGCCCGGTCGCTGGAAGGGCAAGCAGTTTCA
GACCGAGGGATGCCCGTCGAACGCAGATAACGGGAATTTCGCCAAGCTCA
AGTACTCCTCAGAGCCGTTCCAGGCAAGTCCCGTCGAACGCAGATAACGG
GAATTTCGCCAAGCTCAAGTACTCCTCAGAGCCGTTCCAGGCAAGTACAG
AGCGGTTCACCAAGACGCAGCCGCTGAGCAAGCGAAACCTTGGTTTCGGC
ACCAAAGATGCTTTCAAGAGGGGGGAGTTTACGGCCACCATTCGAACGCA
GCAGTACAGACAGAGCGGTTCACCAAGACGCAGCCGCTGAGCAAGCGAAA
CCTTGGTTTCGGCACCAAAGATGCTTTCAAGAGGGGGGAGTTTACGGCCA
CCATTCGAACGCAGCAGTACAGGGAAATGCTCCGCCAGGAGCAGCGGTTG
ATGAACGCATCACGGAACGTAAAGGGAAATGCTCCGCCAGGAGCAGCGGT
TGATGAACGCATCACGGAACGTAAAGGACGAGCGAGAGAAGGTGGCACAG
GCGAAAGCCAAGCACGCCTCCTCGAGAAGATTCGTTGAAGGGAAGGAGGA
GATCAAGCACCTGTATGACGTCGGCCGCTCCCTTCAAAATGAATTCAACC
CTTATCGAAAACACGATGCGTTTTACGACTTTCAGAAGGACGAGCGAGAG
AAGGTGGCACAGGCGAAAGCCAAGCACGCCTCCTCGAGAAGATTCGTTGA
AGGGAAGGAGGAGATCAAGCACCTGTATGACGTCGGCCGCTCCCTTCAAA
ATGAATTCAACCCTTATCGAAAACACGATGCGTTTTACGACTTTCAGAAG
TCCACAGGGAAGCGTATGGGGCCGTACCGCACCATGGCCCAGGACATTGG
GAACATGGCGTGGGACCATCGCCCGACGGCTCCAGAGTTTGGGCCGATAG
GCCACATCAAGAACTTCTACGACCGCAGTCACCTCGAGGTGGCCGGGGAG
GAGGCCCGTATGGTCCAGCCGCGGGCGCGTCTGCGTTGATCCACAGGGAA
GCGTATGGGGCCGTACCGCACCATGGCCCAGGACATTGGGAACATGGCGT
GGGACCATCGCCCGACGGCTCCAGAGTTTGGGCCGATAGGCCACATCAAG
AACTTCTACGACCGCAGTCACCTCGAGGTGGCCGGGGAGGAGGCCCGTAT
GGTCCAGCCGCGGGCGCGTCTGCGTTGA
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