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Homology
BLAST of mRNA_E-fasciculatus_F_contig10297.262.1 vs. uniprot
Match: D8LQ27_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ27_ECTSI) HSP 1 Score: 450 bits (1158), Expect = 8.600e-156 Identity = 254/288 (88.19%), Postives = 266/288 (92.36%), Query Frame = 1
Query: 94 MMAAPTPGRESEGERTWIMAKRVASNWEKEDENSRNSLSAPEASQPSPAVPKTFVSTRLRHLRLSPDGTTLVVKSEQGGVDHELALDELLEVHETPSEESVTLMGTDIEIRIAFKGQAKALKQFRNMLVPTGTTGTTTPTEGDADSSTTVTTIKDPMDSSGGVAPPSPAEQVQSREAAPAEEPSPNGASLDGRNSAGAGSSYQQQHSLGGIDEGSTYDREAPSSRSAAPT-PASMGKMSSNV----ISPGSSVSGWGSVLGPGEGNLAADNATQRQLADITERAGVAQ 942
MMAAPTPGRESEGERTWIMAKRVASNWEKEDE+SRN LSAPEASQPSPAVPKTFVSTRLRHLRLSPDGTTLVVKSEQGGVDHELALDELLEVHETPSEESVTLMGTDIEIRIAFKGQAKALKQFRNMLVPTGTTGTTTP+E DAD STTVTTIKDPM SSGG APPSPAE++Q+REAA A PS NGA LDGRN+ AGS+YQQQH LGGIDEGSTY REAPSSRSAA T PA MGKM+S+V ISPGSSVSGWGSV+GPG+GNLAA+NATQRQLADITERAG AQ
Sbjct: 1 MMAAPTPGRESEGERTWIMAKRVASNWEKEDESSRNRLSAPEASQPSPAVPKTFVSTRLRHLRLSPDGTTLVVKSEQGGVDHELALDELLEVHETPSEESVTLMGTDIEIRIAFKGQAKALKQFRNMLVPTGTTGTTTPSEVDADRSTTVTTIKDPMGSSGGAAPPSPAEELQAREAAAAGGPSTNGAYLDGRNT--AGSNYQQQHGLGGIDEGSTYAREAPSSRSAAATTPAGMGKMTSSVTNSVISPGSSVSGWGSVMGPGDGNLAAENATQRQLADITERAGAAQ 286
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-15_001190.1 |
| Exons | 5 |
| Model size | 963 |
| Cds size | 963 |
| Stop | 1 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig10297.262.1 >prot_E-fasciculatus_F_contig10297.262.1 ID=prot_E-fasciculatus_F_contig10297.262.1|Name=mRNA_E-fasciculatus_F_contig10297.262.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=321bp
RSASVPDDEGDDDADPSGRASSVRSTPGNSEMMAAPTPGRESEGERTWIM
AKRVASNWEKEDENSRNSLSAPEASQPSPAVPKTFVSTRLRHLRLSPDGT
TLVVKSEQGGVDHELALDELLEVHETPSEESVTLMGTDIEIRIAFKGQAK
ALKQFRNMLVPTGTTGTTTPTEGDADSSTTVTTIKDPMDSSGGVAPPSPA
EQVQSREAAPAEEPSPNGASLDGRNSAGAGSSYQQQHSLGGIDEGSTYDR
EAPSSRSAAPTPASMGKMSSNVISPGSSVSGWGSVLGPGEGNLAADNATQ
RQLADITERAGVAQVCIVGV* back to topmRNA from alignment at E-fasciculatus_F_contig10297:33..4634+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig10297.262.1 ID=mRNA_E-fasciculatus_F_contig10297.262.1|Name=mRNA_E-fasciculatus_F_contig10297.262.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=4602bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10297:33..4634+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGAAGCGCTAGCGTGCCGGACGACGAGGGCGACGACGACGCCGACCCCAG
CGGCCGCGCCTCCTCTGTGCGGTCCACCCCGGGCAACAGCGAGATGATGG
CGGCACCTACCCCCGGCCGGGAGTCGGAGGGCGAGAGGACCTGGATCATG
GCCAAGCGGGTCGCGTCCAACTGGGAGAAGGAAGACGAGAACAGCCGTAA
CAGCCTTTCCGCGCCGGAGGCTAGCCAGCCGTCCCCTGCGGTGCCGAAGA
CGTGAGTCGAAGTGGTTGGCGGGGGGGTGGGTGGGAGGGGGAGGGTATAG
CGGCAGCGGTGTAGTCGAAGAACAATTGTGGTGGCTTCTAGTATTGGTCC
AGGGTAGTATTTTTTTGTCGTCTGATACCTATTGTGGACGTCGGGCCTTC
TACATGTCGGTACAAATCATAGCTTGCACCTCTCGGTAACAACATGGACA
GCAGGTTGGGCATGTTTCAAGCATAGTGGAAGGGCAAAAGCCGAGAATAT
TGCATAGTTGACTCAAAAAGAGAACATAGAAGAAGAACGGGGAAAAAAAC
GTGATTGGAAAAGCCTACGATACAAATATCAAGTGGTTGAGAGGGGCTCC
GTGTTTTGGGACAGGGGGTAAGGGGGGTTCCGTGAAGAGACGAAATTTGT
TGGAAAGTAGCGGTGTAGTTGCCTTCTATTTAAGTGGTTTGATAGGTCCA
GGGTAGTACAGTATCGGCATGAACGCATGTGGATGGTTCCTGATTGCTCC
AGAAGAGAGAGGTGAAGGTCCTTCGTCAACTCGTACAGATCTCTCTGAAC
TACCGCTAATCGAACCGCGTTGTGCGTGGCATGCACACTTTTAGTTTACC
TGGCTCACCAATGAAAAGAAAGACGGCGAGTTACTGCTGTACCTTCACAG
CGGGACAACAGCCACAAACTCTCGCCTCTTGTTTTCATGTGTCTCCTTGT
CGTGCGGGGACCCCGCAGATTCGTCTCTACCCGGCTGCGGCACCTCCGCC
TCTCCCCCGACGGGACCACCCTCGTGGTCAAGTCTGAGCAGGGAGGCGTC
GACCACGAGCTAGCGCTGGACGAGCTCCTCGAGGTGCGTGGGCGGGCGGG
ACCCTGAAGATTCGGTTTGGTTTTGTCACCCGTTGTTCCGCTTTGATGCG
ACTAGCCAGCCCTCAAGGGTCGGGGCACGCGGCTCCGCTGCTGCTGTAGG
TGTTTGTAATATTTTTCTTGTCTCGGCCCTTGGGCCACGAAGGTGAACCG
ACCGACCAACTTCCGTAGTCAACCTGTGAGAGACATGGACTGCCCGGCTG
CATGCGCTCACACCAACGTTTGTAAATGTCTAGATCTTAACACTCCAATA
CCACGCCAATAACCGACTCGTGCCCCCGCTGGTAGGAAAAGCCGTCTAAA
ATGATCGCAGTCGGTTATTAAAGCCATCGTTTCGCTTTGGTGCGCTTGGC
AGTTAGTGGTCAGAGGTGCTGCTCTGCCATCGTTGTAGGTGGTTTTCGTC
TTGTTTCTCTATCCCTTCAATTTCTATGGTCAATTAAAAGTATGGGTGGG
GTGTGTGTTTGTGTTGTGTTTTGTTTTGTTTTTGTTGTGGGTATTTTTTA
TTTTTCGGTTTTGGGGAGACAATATCGTTCTTGTAACACGTTAACACGAG
ACATGCGTGCGAGAGGCTTCCCCCCACGTTTGAAGGAGTAAGAAGGGGCG
GTGCGAGGCCCACCACCTACCACTTATACCGCAGTTCAACTCGCGCGTAC
CCCCCCCCCCCCACCCCCCCCTACTCTAGGTTCACGAAACCCCCTCAGAG
GAGAGCGTGACCCTCATGGGCACAGACATCGAGATCCGCATCGCGTTCAA
GGGGCAGGCCAAGGCTCTGAAGCAGTTCCGCAACATGCTGGTACCGACGG
GTACGACTGGCACCACTACCCCCACGGAGGGGGATGCTGACAGTTCGACG
ACTGTCACCACTATCAAGGACCCTATGGACTCGTCGGGAGGAGGTGAGGA
CACCCCCTCTCTCTCTCTGTGTGTGGGTCCTCGCCTATTGTACCGGGTTT
AGTGTGGGTCCCCCGAGTGTATAGGGTTTAGTATTAGGTTGTGTATGCCT
CTTCGTCTGTCACCCTTGTCTGTCTCTCTCTCGCTCTCTGTCTCTCTCTC
TCTCCCTTTGCCTTCCTTTTTTTCGTTGGGTGGAAGCACGGACATTCTAG
ACCGTGTAGCCTGTGTGGTGTGGGTGTGTTTTTTTTTATTGTTGTCATCG
ACCGCATTAAACCGGCCGACCAATGAAGGGAGGTCAATGCCACCAATGAA
AGGAGGTCAATGTCACCAATGAAAGGAGGTCAATGCCACCAATGAAGGGA
GGTCAATGCCAACAATGAAAGGAGGTCAATGCCAACAATGAAAGGAGGTC
AATGCCACCAATGAAAGGAGGTCAATGCCAGCGGGTAAAAAGTAAAAAAC
AAGGTCCCTGGAACGGGGGCGAACTTGTAAGTAAAAGACGTGTGACGCGG
TACTGTAAATGCGAATGAATGCCAACATCTGTGGTGCTTGCGCGTGTTTT
GCGTTAGTATCAACTACTCGCCCGGCCAGTTGAAACGTAGACACACGCTA
CAGCAGTCGTGGCTCCGCGTAGGGGGTTCCGATATCAGAGGGTCGAAATC
AGTTGTCACGGACTCGACCCTCTACAGTTGTTGTTGTTGTTGTTTTTCTC
ACATTAGCTCTAGCCCACAAAAGATGGGGAGCCCGTGGTCTCAAAACCCG
GCATACACGACCCCACGAAAGAAACAAACAAACAAAAAAGAGTACGAAAC
CACTCGGAAGAGAAAACAAAATGATAGAAAGAAAGACCAGCTACCGCACC
AAACGAGAAAGAGCCTCGAGGAGACCGATCAAAATAACATGAAACTATAC
TGAAGTAGTTGAGTACTCTGTTGTTTCGGTAAGAGGGGGCTCGGGTATGT
GAGGGTTGAGGGCCTTTGTCAGGCCACCCTCTTCTCTTATATCGGAGCCA
CGACTGTATTATGTATCTAGTCTTGCGAGAGAGACATCGTACGACAAGAA
ACACGATGCTTTCTAAGGAAGGGTAGGTTCGTGGAGACGGGAAAATGTGA
CACAGCAGTTCTTGTTCAGTTATTTGAACACACCCATCTTCAGTGCAGTG
TGTGGTCGTGTCTCTGAGTTTCCTTCATGCCTACGGCAATGTCAATTCTT
CCCGCCGCGCCTCCGACCGTGCCCCCCCCCCCTCCCCCCCTAAACAGTGG
CACCCCCATCTCCAGCCGAGCAAGTGCAATCGCGAGAAGCAGCACCGGCA
GAAGAACCCTCTCCCAACGGAGCCTCTTTGGACGGCCGCAACTCTGCTGG
TGCTGGCAGCAGCTACCAACAGCAGCACAGTCTTGGCGGCATCGATGAGG
GCTCGACGTACGATCGCGAGGTGAGTTGGGGGTGACGGTGTGTGTGTGCG
GGACAGGGAGGGGGGGTAGGGGGGGTACTCATAGGCGTGCATGCCGTAGT
CGTTAGACCATTGACCTCCCATCCCTACAAAGCCGAGACGGAGCACGCCG
GGTTCTCGTCGGACCAGGCTCTCGCATCACCAAGCGCGAAGCGCCGTGAG
GTATTCGGCGAGTCGCACTGGGGAGGTATCAAACCGGGGTCTCCGAGGGA
AAGACGAGAATGGTCTTGAAGGGGGGTGGTAGAGGCTAACAGCAGGGCAC
GGCGATAGGTTGCACGTCATGCCAACGTATCGCTAGGATTAGGGAGGGGA
TACGACCAGCATGACGTGACCATGTGGAGCATGCCACATTCCGAGTTCGA
GAGCGCCCGAACGTCTTTGCTTGTTCTCATCTCCAAGTAGTTAGGAGTAG
CGTTAACGTGAGGTGTCTACGCTTGACAAGGAACGCTTGGTGAACGGTCG
ACCCTTGGTTTCATCAAGGCAAGCAGCAAATGAGCACCCGCCCCAGTTTA
CATGAGGAATACTGTATCCAGTAAATAGTTAACGGTTACTCCGGTTGAAG
AGGAATGCTTGACGAACAGTCGAACGTCTACGTGTACGTGGTAGCGAGGG
AAGGGATTGCTGTACAACACCCTTTTCGCGATAAAAATATCTCAGGTATA
CAGGAACCGCAGGAGGGGGTCCAACCCCCCCCTCCTATGTGGCCCCGGTT
GGGTCGTCTAGCTAGTAGAAGTGGAGGATGGGGGCAAGAGGGGCAGACGA
CAGAGTCCAATACTGCGAGGAAAAAAAATAAAATGTACGTGGTAGCCACA
GTGATCAGTCATTCCCAACGGTGTCTCCGCTTGAAAATATATGCTTGACG
AACAGTCGAACCTCTACTTCGTAGGAATTTGTAGTACCCCCAATCCCAAC
CCCACCCCCCACGCCCACGCCCCACGGGCCTTGCACCCGCAGGCCCCCTC
GTCGAGGTCGGCGGCGCCGACGCCGGCGAGCATGGGCAAGATGAGCTCAA
ACGTCATCTCTCCCGGCTCTAGCGTGTCCGGCTGGGGCAGCGTCCTGGGT
CCCGGGGAGGGCAACCTTGCCGCGGACAACGCCACCCAGAGGCAGCTCGC
CGACATCACGGAGCGAGCCGGCGTTGCTCAGGTATGTATTGTTGGTGTGT
GA back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig10297:33..4634+ >mRNA_E-fasciculatus_F_contig10297.262.1 ID=mRNA_E-fasciculatus_F_contig10297.262.1|Name=mRNA_E-fasciculatus_F_contig10297.262.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1926bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10297:33..4634+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGAAGCGCTAGCGTGCCGGACGACGAGGGCGACGACGACGCCGACCCCAG
CGGCCGCGCCTCCTCTGTGCGGTCCACCCCGGGCAACAGCGAGATGATGG
CGGCACCTACCCCCGGCCGGGAGTCGGAGGGCGAGAGGACCTGGATCATG
GCCAAGCGGGTCGCGTCCAACTGGGAGAAGGAAGACGAGAACAGCCGTAA
CAGCCTTTCCGCGCCGGAGGCTAGCCAGCCGTCCCCTGCGGTGCCGAAGA
CAGAAGCGCTAGCGTGCCGGACGACGAGGGCGACGACGACGCCGACCCCA
GCGGCCGCGCCTCCTCTGTGCGGTCCACCCCGGGCAACAGCGAGATGATG
GCGGCACCTACCCCCGGCCGGGAGTCGGAGGGCGAGAGGACCTGGATCAT
GGCCAAGCGGGTCGCGTCCAACTGGGAGAAGGAAGACGAGAACAGCCGTA
ACAGCCTTTCCGCGCCGGAGGCTAGCCAGCCGTCCCCTGCGGTGCCGAAG
ACATTCGTCTCTACCCGGCTGCGGCACCTCCGCCTCTCCCCCGACGGGAC
CACCCTCGTGGTCAAGTCTGAGCAGGGAGGCGTCGACCACGAGCTAGCGC
TGGACGAGCTCCTCGAGATTCGTCTCTACCCGGCTGCGGCACCTCCGCCT
CTCCCCCGACGGGACCACCCTCGTGGTCAAGTCTGAGCAGGGAGGCGTCG
ACCACGAGCTAGCGCTGGACGAGCTCCTCGAGGTTCACGAAACCCCCTCA
GAGGAGAGCGTGACCCTCATGGGCACAGACATCGAGATCCGCATCGCGTT
CAAGGGGCAGGCCAAGGCTCTGAAGCAGTTCCGCAACATGCTGGTACCGA
CGGGTACGACTGGCACCACTACCCCCACGGAGGGGGATGCTGACAGTTCG
ACGACTGTCACCACTATCAAGGACCCTATGGACTCGTCGGGAGGAGGTTC
ACGAAACCCCCTCAGAGGAGAGCGTGACCCTCATGGGCACAGACATCGAG
ATCCGCATCGCGTTCAAGGGGCAGGCCAAGGCTCTGAAGCAGTTCCGCAA
CATGCTGGTACCGACGGGTACGACTGGCACCACTACCCCCACGGAGGGGG
ATGCTGACAGTTCGACGACTGTCACCACTATCAAGGACCCTATGGACTCG
TCGGGAGGAGTGGCACCCCCATCTCCAGCCGAGCAAGTGCAATCGCGAGA
AGCAGCACCGGCAGAAGAACCCTCTCCCAACGGAGCCTCTTTGGACGGCC
GCAACTCTGCTGGTGCTGGCAGCAGCTACCAACAGCAGCACAGTCTTGGC
GGCATCGATGAGGGCTCGACGTACGATCGCGAGTGGCACCCCCATCTCCA
GCCGAGCAAGTGCAATCGCGAGAAGCAGCACCGGCAGAAGAACCCTCTCC
CAACGGAGCCTCTTTGGACGGCCGCAACTCTGCTGGTGCTGGCAGCAGCT
ACCAACAGCAGCACAGTCTTGGCGGCATCGATGAGGGCTCGACGTACGAT
CGCGAGGCCCCCTCGTCGAGGTCGGCGGCGCCGACGCCGGCGAGCATGGG
CAAGATGAGCTCAAACGTCATCTCTCCCGGCTCTAGCGTGTCCGGCTGGG
GCAGCGTCCTGGGTCCCGGGGAGGGCAACCTTGCCGCGGACAACGCCACC
CAGAGGCAGCTCGCCGACATCACGGAGCGAGCCGGCGTTGCTCAGGTATG
TATTGTTGGTGTGTGAGCCCCCTCGTCGAGGTCGGCGGCGCCGACGCCGG
CGAGCATGGGCAAGATGAGCTCAAACGTCATCTCTCCCGGCTCTAGCGTG
TCCGGCTGGGGCAGCGTCCTGGGTCCCGGGGAGGGCAACCTTGCCGCGGA
CAACGCCACCCAGAGGCAGCTCGCCGACATCACGGAGCGAGCCGGCGTTG
CTCAGGTATGTATTGTTGGTGTGTGA back to top
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